Rmu_sc0008096.1_g000015

Replication factor C subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008096.1
Physical Location & Seq
Reverse (-)
67965 .. 71425
3461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008096.1_g000015.1.cds

Sequence Viewer

Length: 1020 bp
atggcgccactggtccagagctctcagccatgggtcgaaaaatatcggccgaagcaagtgaaagatgtggctcagcaggatgaggtggtccgcgtcctcaccaacaccctagagacctcaaattgtcctcatatgctcttctatggcccgcccggcactggaaaaaccaccaccgctctcgccattgcccaccagctttttggacctgaactctacaagtctagagttttggagctcaatgcaagtgatgatcgtgggatcaatgttgttcggacaaagatcaaagactttgctgctgtcgctgtgggttctggtcaacgacaggggggttacccttgtccaccatttaagatcattattcttgatgaggcggattcaatgacagaagatgctcagaatgccctaagacgtacaatggaaacttactccaaagtcacaagattcttctttatatgtaattatatcagcaggatcatagagccacttgcctcaaggtgtgcaaagttcaggtttaagccactttcagaagatataatgatcacccgtgtactgtacatttgccaagaagaaggacttgacctggagccagaggttctgtcaacactaagttctatctcacaaggtgatcttcgtcgagctatcacatatttgcagtcagctgctcgcttatttggatcttctattacttcaaaggacctgattagtgtctccggggtaattccacaagaggttgtcgattcattttttgctgcttgcagaagtggcaactttgattcggcaaacaaggaagtcaacaatgtaattgcagaaggatatccagtctcccaaatgttttcacagttgtttgagattgtggttggagcagatgatatatcagatgaacagaaggctagaatatgcaagaaattgggcgaagcagataagcgtcttgttgatggcagtgacgaatacttgcagctgctggatgttgcaagcagcgcaatgcgagccatctgtaacatgcaagaagaattctcttaa

Protein Analysis

339

Amino Acids

37.66

Weight (kDa)

5.16

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012087)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 176
AccII CGCG 1 cut(s) 93
AciI CCGC 4 cut(s) 91, 149, 174, 371
AclWI GGATC 3 cut(s) 266, 479, 682
AcoI YGGCCR 1 cut(s) 47
AcsI RAATTY 1 cut(s) 1010
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 623
AfaI GTAC 3 cut(s) 412, 549, 554
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 2 cut(s) 378, 690
AjnI CCWGG 1 cut(s) 579
AluBI AGCT 6 cut(s) 21, 196, 235, 638, 659, 958
AluI AGCT 6 cut(s) 21, 196, 235, 638, 659, 958
Alw21I GWGCWC 2 cut(s) 23, 237
Alw26I GTCTC 3 cut(s) 107, 712, 826
AlwI GGATC 3 cut(s) 266, 479, 682
AlwNI CAGNNNCTG 1 cut(s) 961
AoxI GGCC 2 cut(s) 47, 145
ApeKI GCWGC 6 cut(s) 293, 659, 749, 955, 958, 975
ApoI RAATTY 1 cut(s) 1010
AspLEI GCGC 2 cut(s) 7, 980
AspS9I GGNCC 5 cut(s) 13, 88, 146, 203, 694
AsuC2I CCSGG 2 cut(s) 153, 712
AsuHPI GGTGA 3 cut(s) 91, 532, 635
AvaII GGWCC 4 cut(s) 13, 88, 203, 694
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 23, 237
Bbv12I GWGCWC 2 cut(s) 23, 237
BbvI GCAGC 6 cut(s) 280, 646, 736, 945, 967, 987
BccI CCATC 2 cut(s) 929, 998
BciT130I CCWGG 1 cut(s) 581
BclI TGATCA 1 cut(s) 537
BcnI CCSGG 2 cut(s) 153, 712
BcoDI GTCTC 3 cut(s) 107, 712, 826
BfaI CTAG 3 cut(s) 110, 222, 891
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 6 cut(s) 294, 660, 750, 956, 959, 976
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 6 cut(s) 295, 661, 751, 957, 960, 977
Bme1390I CCNGG 3 cut(s) 153, 581, 712
Bme18I GGWCC 4 cut(s) 13, 88, 203, 694
BmgT120I GGNCC 5 cut(s) 13, 88, 146, 203, 694
BmiI GGNNCC 2 cut(s) 6, 585
BmrFI CCNGG 3 cut(s) 153, 581, 712
BmsI GCATC 1 cut(s) 379
BpmI CTGGAG 1 cut(s) 602
Bpu1102I GCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 475
BpuMI CCSGG 2 cut(s) 153, 712
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 29, 711
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 3 cut(s) 15, 163, 818
Bse3DI GCAATG 2 cut(s) 183, 987
BseBI CCWGG 1 cut(s) 581
BseDI CCNNGG 2 cut(s) 29, 711
BseGI GGATG 2 cut(s) 85, 970
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMI GCAATG 2 cut(s) 183, 987
BseMII CTCAG 3 cut(s) 38, 86, 407
BseNI ACTGG 3 cut(s) 15, 163, 818
BseX3I CGGCCG 1 cut(s) 47
BseXI GCAGC 6 cut(s) 280, 646, 736, 945, 967, 987
Bsh1236I CGCG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 49, 147
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 23, 237
BsiSI CCGG 2 cut(s) 153, 711
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 3 cut(s) 107, 712, 826
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 2 cut(s) 49, 147
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 23, 237
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 8 cut(s) 250, 258, 279, 351, 471, 537, 625, 674
Bsp1720I GCTNAGC 1 cut(s) 72
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 4 cut(s) 91, 149, 174, 371
BspANI GGCC 2 cut(s) 49, 147
BspCNI CTCAG 3 cut(s) 37, 85, 406
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 6, 585
BspPI GGATC 3 cut(s) 266, 479, 682
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 176
BsrDI GCAATG 2 cut(s) 183, 987
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 3 cut(s) 15, 163, 818
BssECI CCNNGG 2 cut(s) 29, 711
BssMI GATC 8 cut(s) 250, 258, 279, 351, 471, 537, 625, 674
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 2 cut(s) 552, 840
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 552
BstC8I GCNNGC 5 cut(s) 149, 664, 754, 973, 987
BstDEI CTNAG 5 cut(s) 24, 72, 393, 404, 605
BstDSI CCRYGG 1 cut(s) 29
BstEII GGTNACC 1 cut(s) 329
BstF5I GGATG 2 cut(s) 85, 970
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 980
BstKTI GATC 8 cut(s) 253, 261, 282, 354, 474, 540, 628, 677
BstMAI GTCTC 3 cut(s) 107, 712, 826
BstMBI GATC 8 cut(s) 250, 258, 279, 351, 471, 537, 625, 674
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 6 cut(s) 153, 299, 398, 762, 977, 986
BstNI CCWGG 1 cut(s) 581
BstNSI RCATGY 1 cut(s) 1003
BstPI GGTNACC 1 cut(s) 329
BstSCI CCNGG 3 cut(s) 151, 579, 710
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 6 cut(s) 280, 646, 736, 945, 967, 987
BstX2I RGATCY 1 cut(s) 674
BstXI CCANNNNNNTGG 1 cut(s) 200
BstYI RGATCY 1 cut(s) 674
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 2 cut(s) 49, 147
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 2 cut(s) 85, 970
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 3 cut(s) 8, 156, 946
Cac8I GCNNGC 5 cut(s) 149, 664, 754, 973, 987
CaiI CAGNNNCTG 1 cut(s) 961
CfoI GCGC 2 cut(s) 7, 980
Cfr13I GGNCC 5 cut(s) 13, 88, 146, 203, 694
CseI GACGC 2 cut(s) 82, 914
Csp6I GTAC 3 cut(s) 411, 548, 553
CviAII CATG 2 cut(s) 30, 1000
CviQI GTAC 3 cut(s) 411, 548, 553
DdeI CTNAG 5 cut(s) 24, 72, 393, 404, 605
DinI GGCGCC 1 cut(s) 6
DpnI GATC 8 cut(s) 252, 260, 281, 353, 473, 539, 627, 676
DpnII GATC 8 cut(s) 250, 258, 279, 351, 471, 537, 625, 674
DraIII CACNNNGTG 1 cut(s) 623
EaeI YGGCCR 1 cut(s) 47
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 386
Ecl136II GAGCTC 2 cut(s) 21, 235
EclXI CGGCCG 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 2 cut(s) 23, 237
Eco31I GGTCTC 1 cut(s) 107
Eco32I GATATC 1 cut(s) 815
Eco47I GGWCC 4 cut(s) 13, 88, 203, 694
Eco52I CGGCCG 1 cut(s) 47
Eco53kI GAGCTC 2 cut(s) 21, 235
Eco91I GGTNACC 1 cut(s) 329
EcoICRI GAGCTC 2 cut(s) 21, 235
EcoO109I RGGNCCY 1 cut(s) 694
EcoO65I GGTNACC 1 cut(s) 329
EcoRI GAATTC 1 cut(s) 1010
EcoRII CCWGG 1 cut(s) 579
EcoRV GATATC 1 cut(s) 815
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 2 cut(s) 23, 237
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 2 cut(s) 33, 1003
FalI AAGNNNNNCTT 4 cut(s) 558, 590, 612, 644
FatI CATG 2 cut(s) 29, 999
FauI CCCGC 1 cut(s) 156
FauNDI CATATG 1 cut(s) 132
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 6 cut(s) 294, 660, 750, 956, 959, 976
FokI GGATG 2 cut(s) 92, 977
FriOI GRGCYC 2 cut(s) 23, 237
Fsp4HI GCNGC 6 cut(s) 294, 660, 750, 956, 959, 976
FspBI CTAG 3 cut(s) 110, 222, 891
GlaI GCGC 2 cut(s) 6, 979
GluI GCNGC 6 cut(s) 294, 660, 750, 956, 959, 976
GsuI CTGGAG 1 cut(s) 602
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 49, 147
HapII CCGG 2 cut(s) 153, 711
HgaI GACGC 2 cut(s) 82, 914
HhaI GCGC 2 cut(s) 7, 980
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 33, 1003
Hin6I GCGC 2 cut(s) 5, 978
HinP1I GCGC 2 cut(s) 5, 978
HincII GTYRAC 3 cut(s) 317, 600, 793
HindII GTYRAC 3 cut(s) 317, 600, 793
HinfI GANTC 4 cut(s) 374, 441, 737, 773
HpaII CCGG 2 cut(s) 153, 711
HphI GGTGA 3 cut(s) 91, 532, 635
Hpy166II GTNNAC 5 cut(s) 317, 341, 548, 600, 793
Hpy188I TCNGA 4 cut(s) 273, 396, 526, 877
Hpy188III TCNNGA 3 cut(s) 16, 222, 362
Hpy8I GTNNAC 5 cut(s) 317, 341, 548, 600, 793
Hpy99I CGWCG 1 cut(s) 636
HpyAV CCTTC 3 cut(s) 563, 803, 880
HpyCH4III ACNGT 2 cut(s) 552, 840
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 9 cut(s) 242, 500, 652, 756, 806, 900, 955, 971, 1003
HpyF10VI GCNNNNNNNGC 6 cut(s) 153, 299, 398, 762, 977, 986
HpyF3I CTNAG 5 cut(s) 24, 72, 393, 404, 605
HpySE526I ACGT 1 cut(s) 409
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 33, 1003
HspAI GCGC 2 cut(s) 5, 978
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 8 cut(s) 250, 258, 279, 351, 471, 537, 625, 674
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 3 cut(s) 232, 583, 860
Lsp1109I GCAGC 6 cut(s) 280, 646, 736, 945, 967, 987
LweI GCATC 1 cut(s) 379
MaeI CTAG 3 cut(s) 110, 222, 891
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 4 cut(s) 329, 433, 941, 995
MalI GATC 8 cut(s) 252, 260, 281, 353, 473, 539, 627, 676
MbiI CCGCTC 1 cut(s) 176
MboI GATC 8 cut(s) 250, 258, 279, 351, 471, 537, 625, 674
MboII GAAGA 8 cut(s) 130, 398, 436, 539, 578, 620, 669, 1019
MflI RGATCY 1 cut(s) 674
MhlI GDGCHC 2 cut(s) 23, 237
MluCI AATT 6 cut(s) 121, 457, 717, 801, 905, 1010
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 838
MnlI CCTC 8 cut(s) 76, 107, 127, 138, 361, 499, 583, 721
MseI TTAA 3 cut(s) 348, 513, 1018
MspA1I CMGCKG 2 cut(s) 659, 958
MspI CCGG 2 cut(s) 153, 711
MspR9I CCNGG 3 cut(s) 153, 581, 712
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 1 cut(s) 581
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 6 cut(s) 153, 299, 398, 762, 977, 986
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 153, 712
NcoI CCATGG 1 cut(s) 29
NdeI CATATG 1 cut(s) 132
NdeII GATC 8 cut(s) 250, 258, 279, 351, 471, 537, 625, 674
NlaIII CATG 2 cut(s) 33, 1003
NlaIV GGNNCC 2 cut(s) 6, 585
NmuCI GTSAC 2 cut(s) 433, 941
NspI RCATGY 1 cut(s) 1003
PciSI GCTCTTC 1 cut(s) 143
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 4 cut(s) 374, 441, 737, 773
PkrI GCNGC 6 cut(s) 295, 661, 751, 957, 960, 977
PluTI GGCGCC 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 694
Psp124BI GAGCTC 2 cut(s) 23, 237
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 1 cut(s) 579
PspEI GGTNACC 1 cut(s) 329
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 2 cut(s) 6, 585
PspPI GGNCC 5 cut(s) 13, 88, 146, 203, 694
PspPPI RGGWCCY 1 cut(s) 694
PstNI CAGNNNCTG 1 cut(s) 961
PsuI RGATCY 1 cut(s) 674
PvuII CAGCTG 2 cut(s) 659, 958
RsaI GTAC 3 cut(s) 412, 549, 554
RsaNI GTAC 3 cut(s) 411, 548, 553
SacI GAGCTC 2 cut(s) 23, 237
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 348, 513, 1018
SatI GCNGC 6 cut(s) 294, 660, 750, 956, 959, 976
Sau3AI GATC 8 cut(s) 250, 258, 279, 351, 471, 537, 625, 674
Sau96I GGNCC 5 cut(s) 13, 88, 146, 203, 694
ScrFI CCNGG 3 cut(s) 153, 581, 712
SduI GDGCHC 2 cut(s) 23, 237
SfaNI GCATC 1 cut(s) 379
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 4 cut(s) 13, 88, 203, 694
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
Sse9I AATT 6 cut(s) 121, 457, 717, 801, 905, 1010
SsiI CCGC 4 cut(s) 91, 149, 174, 371
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 3 cut(s) 110, 222, 891
SstI GAGCTC 2 cut(s) 23, 237
StyD4I CCNGG 3 cut(s) 151, 579, 710
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 2 cut(s) 552, 840
TaiI ACGT 1 cut(s) 412
TaqI TCGA 3 cut(s) 36, 634, 735
TasI AATT 6 cut(s) 121, 457, 717, 801, 905, 1010
TatI WGTACW 2 cut(s) 547, 552
TfiI GAWTC 4 cut(s) 374, 441, 737, 773
Tru1I TTAA 3 cut(s) 348, 513, 1018
Tru9I TTAA 3 cut(s) 348, 513, 1018
TscAI CASTG 3 cut(s) 15, 163, 946
TseFI GTSAC 2 cut(s) 433, 941
TseI GCWGC 6 cut(s) 293, 659, 749, 955, 958, 975
Tsp45I GTSAC 2 cut(s) 433, 941
TspDTI ATGAA 2 cut(s) 729, 894
TspRI CASTG 3 cut(s) 15, 163, 946
VpaK11BI GGWCC 4 cut(s) 13, 88, 203, 694
XapI RAATTY 1 cut(s) 1010
XbaI TCTAGA 1 cut(s) 221
XceI RCATGY 1 cut(s) 1003
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XspI CTAG 3 cut(s) 110, 222, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.