Replication factor C subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G21690 AT1G21690 AT1G21690 AT1G21690 |
| fragaria_vesca | FvH4_2g27570 FvH4_2g27570 |
| malus_domestica | MD15G1344500.v1.1 |
| prunus_persica | Prupe.1G492200_v2.0.a1 Prupe.1G492200_v2.0.a1 |
| pyrus_communis | pycom15g30770 |
| rosa_chinensis | RchiOBHm_Chr6g0296411 |
| rosa_laevigata | RLG00000011690 |
| rosa_multiflora | Rmu_sc0008096.1_g000015 |
| rosa_roxburghii | Rroxscaffold_7G00171570 Rroxscaffold_7G00178550 |
| rosa_rugosa | Rorug06G0262100 Rorug06G0262200 |
| rosa_samantha | Rh6BG381800 |
| rosa_wichuraiana | Rw6G032570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AccBSI | CCGCTC | 1 cut(s) | 176 |
| AccII | CGCG | 1 cut(s) | 93 |
| AciI | CCGC | 4 cut(s) | 91, 149, 174, 371 |
| AclWI | GGATC | 3 cut(s) | 266, 479, 682 |
| AcoI | YGGCCR | 1 cut(s) | 47 |
| AcsI | RAATTY | 1 cut(s) | 1010 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AdeI | CACNNNGTG | 1 cut(s) | 623 |
| AfaI | GTAC | 3 cut(s) | 412, 549, 554 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 158 |
| AgsI | TTSAA | 2 cut(s) | 378, 690 |
| AjnI | CCWGG | 1 cut(s) | 579 |
| AluBI | AGCT | 6 cut(s) | 21, 196, 235, 638, 659, 958 |
| AluI | AGCT | 6 cut(s) | 21, 196, 235, 638, 659, 958 |
| Alw21I | GWGCWC | 2 cut(s) | 23, 237 |
| Alw26I | GTCTC | 3 cut(s) | 107, 712, 826 |
| AlwI | GGATC | 3 cut(s) | 266, 479, 682 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 961 |
| AoxI | GGCC | 2 cut(s) | 47, 145 |
| ApeKI | GCWGC | 6 cut(s) | 293, 659, 749, 955, 958, 975 |
| ApoI | RAATTY | 1 cut(s) | 1010 |
| AspLEI | GCGC | 2 cut(s) | 7, 980 |
| AspS9I | GGNCC | 5 cut(s) | 13, 88, 146, 203, 694 |
| AsuC2I | CCSGG | 2 cut(s) | 153, 712 |
| AsuHPI | GGTGA | 3 cut(s) | 91, 532, 635 |
| AvaII | GGWCC | 4 cut(s) | 13, 88, 203, 694 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 2 cut(s) | 23, 237 |
| Bbv12I | GWGCWC | 2 cut(s) | 23, 237 |
| BbvI | GCAGC | 6 cut(s) | 280, 646, 736, 945, 967, 987 |
| BccI | CCATC | 2 cut(s) | 929, 998 |
| BciT130I | CCWGG | 1 cut(s) | 581 |
| BclI | TGATCA | 1 cut(s) | 537 |
| BcnI | CCSGG | 2 cut(s) | 153, 712 |
| BcoDI | GTCTC | 3 cut(s) | 107, 712, 826 |
| BfaI | CTAG | 3 cut(s) | 110, 222, 891 |
| BfoI | RGCGCY | 1 cut(s) | 8 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 153 |
| BisI | GCNGC | 6 cut(s) | 294, 660, 750, 956, 959, 976 |
| BlpI | GCTNAGC | 1 cut(s) | 72 |
| BlsI | GCNGC | 6 cut(s) | 295, 661, 751, 957, 960, 977 |
| Bme1390I | CCNGG | 3 cut(s) | 153, 581, 712 |
| Bme18I | GGWCC | 4 cut(s) | 13, 88, 203, 694 |
| BmgT120I | GGNCC | 5 cut(s) | 13, 88, 146, 203, 694 |
| BmiI | GGNNCC | 2 cut(s) | 6, 585 |
| BmrFI | CCNGG | 3 cut(s) | 153, 581, 712 |
| BmsI | GCATC | 1 cut(s) | 379 |
| BpmI | CTGGAG | 1 cut(s) | 602 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 72 |
| BpuEI | CTTGAG | 1 cut(s) | 475 |
| BpuMI | CCSGG | 2 cut(s) | 153, 712 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 107 |
| BsaJI | CCNNGG | 2 cut(s) | 29, 711 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 158 |
| Bse1I | ACTGG | 3 cut(s) | 15, 163, 818 |
| Bse3DI | GCAATG | 2 cut(s) | 183, 987 |
| BseBI | CCWGG | 1 cut(s) | 581 |
| BseDI | CCNNGG | 2 cut(s) | 29, 711 |
| BseGI | GGATG | 2 cut(s) | 85, 970 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 158 |
| BseMI | GCAATG | 2 cut(s) | 183, 987 |
| BseMII | CTCAG | 3 cut(s) | 38, 86, 407 |
| BseNI | ACTGG | 3 cut(s) | 15, 163, 818 |
| BseX3I | CGGCCG | 1 cut(s) | 47 |
| BseXI | GCAGC | 6 cut(s) | 280, 646, 736, 945, 967, 987 |
| Bsh1236I | CGCG | 1 cut(s) | 93 |
| Bsh1285I | CGRYCG | 1 cut(s) | 50 |
| BshFI | GGCC | 2 cut(s) | 49, 147 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BsiEI | CGRYCG | 1 cut(s) | 50 |
| BsiHKAI | GWGCWC | 2 cut(s) | 23, 237 |
| BsiSI | CCGG | 2 cut(s) | 153, 711 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 158 |
| BsmAI | GTCTC | 3 cut(s) | 107, 712, 826 |
| BsmI | GAATGC | 1 cut(s) | 403 |
| BsnI | GGCC | 2 cut(s) | 49, 147 |
| Bso31I | GGTCTC | 1 cut(s) | 107 |
| Bsp1286I | GDGCHC | 2 cut(s) | 23, 237 |
| Bsp1407I | TGTACA | 1 cut(s) | 552 |
| Bsp143I | GATC | 8 cut(s) | 250, 258, 279, 351, 471, 537, 625, 674 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 72 |
| Bsp19I | CCATGG | 1 cut(s) | 29 |
| BspACI | CCGC | 4 cut(s) | 91, 149, 174, 371 |
| BspANI | GGCC | 2 cut(s) | 49, 147 |
| BspCNI | CTCAG | 3 cut(s) | 37, 85, 406 |
| BspFNI | CGCG | 1 cut(s) | 93 |
| BspLI | GGNNCC | 2 cut(s) | 6, 585 |
| BspPI | GGATC | 3 cut(s) | 266, 479, 682 |
| BspQI | GCTCTTC | 1 cut(s) | 143 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BspTNI | GGTCTC | 1 cut(s) | 107 |
| BsrBI | CCGCTC | 1 cut(s) | 176 |
| BsrDI | GCAATG | 2 cut(s) | 183, 987 |
| BsrGI | TGTACA | 1 cut(s) | 552 |
| BsrI | ACTGG | 3 cut(s) | 15, 163, 818 |
| BssECI | CCNNGG | 2 cut(s) | 29, 711 |
| BssMI | GATC | 8 cut(s) | 250, 258, 279, 351, 471, 537, 625, 674 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 1 cut(s) | 29 |
| Bst2UI | CCWGG | 1 cut(s) | 581 |
| Bst4CI | ACNGT | 2 cut(s) | 552, 840 |
| Bst6I | CTCTTC | 1 cut(s) | 143 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAUI | TGTACA | 1 cut(s) | 552 |
| BstC8I | GCNNGC | 5 cut(s) | 149, 664, 754, 973, 987 |
| BstDEI | CTNAG | 5 cut(s) | 24, 72, 393, 404, 605 |
| BstDSI | CCRYGG | 1 cut(s) | 29 |
| BstEII | GGTNACC | 1 cut(s) | 329 |
| BstF5I | GGATG | 2 cut(s) | 85, 970 |
| BstFNI | CGCG | 1 cut(s) | 93 |
| BstH2I | RGCGCY | 1 cut(s) | 8 |
| BstHHI | GCGC | 2 cut(s) | 7, 980 |
| BstKTI | GATC | 8 cut(s) | 253, 261, 282, 354, 474, 540, 628, 677 |
| BstMAI | GTCTC | 3 cut(s) | 107, 712, 826 |
| BstMBI | GATC | 8 cut(s) | 250, 258, 279, 351, 471, 537, 625, 674 |
| BstMCI | CGRYCG | 1 cut(s) | 50 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 153, 299, 398, 762, 977, 986 |
| BstNI | CCWGG | 1 cut(s) | 581 |
| BstNSI | RCATGY | 1 cut(s) | 1003 |
| BstPI | GGTNACC | 1 cut(s) | 329 |
| BstSCI | CCNGG | 3 cut(s) | 151, 579, 710 |
| BstUI | CGCG | 1 cut(s) | 93 |
| BstV1I | GCAGC | 6 cut(s) | 280, 646, 736, 945, 967, 987 |
| BstX2I | RGATCY | 1 cut(s) | 674 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 200 |
| BstYI | RGATCY | 1 cut(s) | 674 |
| BstZI | CGGCCG | 1 cut(s) | 47 |
| BsuRI | GGCC | 2 cut(s) | 49, 147 |
| BtgI | CCRYGG | 1 cut(s) | 29 |
| BtsCI | GGATG | 2 cut(s) | 85, 970 |
| BtsI | GCAGTG | 1 cut(s) | 946 |
| BtsIMutI | CAGTG | 3 cut(s) | 8, 156, 946 |
| Cac8I | GCNNGC | 5 cut(s) | 149, 664, 754, 973, 987 |
| CaiI | CAGNNNCTG | 1 cut(s) | 961 |
| CfoI | GCGC | 2 cut(s) | 7, 980 |
| Cfr13I | GGNCC | 5 cut(s) | 13, 88, 146, 203, 694 |
| CseI | GACGC | 2 cut(s) | 82, 914 |
| Csp6I | GTAC | 3 cut(s) | 411, 548, 553 |
| CviAII | CATG | 2 cut(s) | 30, 1000 |
| CviQI | GTAC | 3 cut(s) | 411, 548, 553 |
| DdeI | CTNAG | 5 cut(s) | 24, 72, 393, 404, 605 |
| DinI | GGCGCC | 1 cut(s) | 6 |
| DpnI | GATC | 8 cut(s) | 252, 260, 281, 353, 473, 539, 627, 676 |
| DpnII | GATC | 8 cut(s) | 250, 258, 279, 351, 471, 537, 625, 674 |
| DraIII | CACNNNGTG | 1 cut(s) | 623 |
| EaeI | YGGCCR | 1 cut(s) | 47 |
| EagI | CGGCCG | 1 cut(s) | 47 |
| Eam1104I | CTCTTC | 1 cut(s) | 143 |
| EarI | CTCTTC | 1 cut(s) | 143 |
| EciI | GGCGGA | 1 cut(s) | 386 |
| Ecl136II | GAGCTC | 2 cut(s) | 21, 235 |
| EclXI | CGGCCG | 1 cut(s) | 47 |
| Eco130I | CCWWGG | 1 cut(s) | 29 |
| Eco24I | GRGCYC | 2 cut(s) | 23, 237 |
| Eco31I | GGTCTC | 1 cut(s) | 107 |
| Eco32I | GATATC | 1 cut(s) | 815 |
| Eco47I | GGWCC | 4 cut(s) | 13, 88, 203, 694 |
| Eco52I | CGGCCG | 1 cut(s) | 47 |
| Eco53kI | GAGCTC | 2 cut(s) | 21, 235 |
| Eco91I | GGTNACC | 1 cut(s) | 329 |
| EcoICRI | GAGCTC | 2 cut(s) | 21, 235 |
| EcoO109I | RGGNCCY | 1 cut(s) | 694 |
| EcoO65I | GGTNACC | 1 cut(s) | 329 |
| EcoRI | GAATTC | 1 cut(s) | 1010 |
| EcoRII | CCWGG | 1 cut(s) | 579 |
| EcoRV | GATATC | 1 cut(s) | 815 |
| EcoT14I | CCWWGG | 1 cut(s) | 29 |
| EcoT38I | GRGCYC | 2 cut(s) | 23, 237 |
| EgeI | GGCGCC | 1 cut(s) | 6 |
| EheI | GGCGCC | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 29 |
| FaeI | CATG | 2 cut(s) | 33, 1003 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 558, 590, 612, 644 |
| FatI | CATG | 2 cut(s) | 29, 999 |
| FauI | CCCGC | 1 cut(s) | 156 |
| FauNDI | CATATG | 1 cut(s) | 132 |
| FbaI | TGATCA | 1 cut(s) | 537 |
| Fnu4HI | GCNGC | 6 cut(s) | 294, 660, 750, 956, 959, 976 |
| FokI | GGATG | 2 cut(s) | 92, 977 |
| FriOI | GRGCYC | 2 cut(s) | 23, 237 |
| Fsp4HI | GCNGC | 6 cut(s) | 294, 660, 750, 956, 959, 976 |
| FspBI | CTAG | 3 cut(s) | 110, 222, 891 |
| GlaI | GCGC | 2 cut(s) | 6, 979 |
| GluI | GCNGC | 6 cut(s) | 294, 660, 750, 956, 959, 976 |
| GsuI | CTGGAG | 1 cut(s) | 602 |
| HaeII | RGCGCY | 1 cut(s) | 8 |
| HaeIII | GGCC | 2 cut(s) | 49, 147 |
| HapII | CCGG | 2 cut(s) | 153, 711 |
| HgaI | GACGC | 2 cut(s) | 82, 914 |
| HhaI | GCGC | 2 cut(s) | 7, 980 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 2 cut(s) | 33, 1003 |
| Hin6I | GCGC | 2 cut(s) | 5, 978 |
| HinP1I | GCGC | 2 cut(s) | 5, 978 |
| HincII | GTYRAC | 3 cut(s) | 317, 600, 793 |
| HindII | GTYRAC | 3 cut(s) | 317, 600, 793 |
| HinfI | GANTC | 4 cut(s) | 374, 441, 737, 773 |
| HpaII | CCGG | 2 cut(s) | 153, 711 |
| HphI | GGTGA | 3 cut(s) | 91, 532, 635 |
| Hpy166II | GTNNAC | 5 cut(s) | 317, 341, 548, 600, 793 |
| Hpy188I | TCNGA | 4 cut(s) | 273, 396, 526, 877 |
| Hpy188III | TCNNGA | 3 cut(s) | 16, 222, 362 |
| Hpy8I | GTNNAC | 5 cut(s) | 317, 341, 548, 600, 793 |
| Hpy99I | CGWCG | 1 cut(s) | 636 |
| HpyAV | CCTTC | 3 cut(s) | 563, 803, 880 |
| HpyCH4III | ACNGT | 2 cut(s) | 552, 840 |
| HpyCH4IV | ACGT | 1 cut(s) | 409 |
| HpyCH4V | TGCA | 9 cut(s) | 242, 500, 652, 756, 806, 900, 955, 971, 1003 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 153, 299, 398, 762, 977, 986 |
| HpyF3I | CTNAG | 5 cut(s) | 24, 72, 393, 404, 605 |
| HpySE526I | ACGT | 1 cut(s) | 409 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 2 cut(s) | 33, 1003 |
| HspAI | GCGC | 2 cut(s) | 5, 978 |
| KasI | GGCGCC | 1 cut(s) | 4 |
| Ksp22I | TGATCA | 1 cut(s) | 537 |
| Kzo9I | GATC | 8 cut(s) | 250, 258, 279, 351, 471, 537, 625, 674 |
| LguI | GCTCTTC | 1 cut(s) | 143 |
| LmnI | GCTCC | 3 cut(s) | 232, 583, 860 |
| Lsp1109I | GCAGC | 6 cut(s) | 280, 646, 736, 945, 967, 987 |
| LweI | GCATC | 1 cut(s) | 379 |
| MaeI | CTAG | 3 cut(s) | 110, 222, 891 |
| MaeII | ACGT | 1 cut(s) | 409 |
| MaeIII | GTNAC | 4 cut(s) | 329, 433, 941, 995 |
| MalI | GATC | 8 cut(s) | 252, 260, 281, 353, 473, 539, 627, 676 |
| MbiI | CCGCTC | 1 cut(s) | 176 |
| MboI | GATC | 8 cut(s) | 250, 258, 279, 351, 471, 537, 625, 674 |
| MboII | GAAGA | 8 cut(s) | 130, 398, 436, 539, 578, 620, 669, 1019 |
| MflI | RGATCY | 1 cut(s) | 674 |
| MhlI | GDGCHC | 2 cut(s) | 23, 237 |
| MluCI | AATT | 6 cut(s) | 121, 457, 717, 801, 905, 1010 |
| Mly113I | GGCGCC | 1 cut(s) | 5 |
| MmeI | TCCRAC | 1 cut(s) | 838 |
| MnlI | CCTC | 8 cut(s) | 76, 107, 127, 138, 361, 499, 583, 721 |
| MseI | TTAA | 3 cut(s) | 348, 513, 1018 |
| MspA1I | CMGCKG | 2 cut(s) | 659, 958 |
| MspI | CCGG | 2 cut(s) | 153, 711 |
| MspR9I | CCNGG | 3 cut(s) | 153, 581, 712 |
| Mva1269I | GAATGC | 1 cut(s) | 403 |
| MvaI | CCWGG | 1 cut(s) | 581 |
| MvnI | CGCG | 1 cut(s) | 93 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 153, 299, 398, 762, 977, 986 |
| NarI | GGCGCC | 1 cut(s) | 5 |
| NciI | CCSGG | 2 cut(s) | 153, 712 |
| NcoI | CCATGG | 1 cut(s) | 29 |
| NdeI | CATATG | 1 cut(s) | 132 |
| NdeII | GATC | 8 cut(s) | 250, 258, 279, 351, 471, 537, 625, 674 |
| NlaIII | CATG | 2 cut(s) | 33, 1003 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 585 |
| NmuCI | GTSAC | 2 cut(s) | 433, 941 |
| NspI | RCATGY | 1 cut(s) | 1003 |
| PciSI | GCTCTTC | 1 cut(s) | 143 |
| PctI | GAATGC | 1 cut(s) | 403 |
| PfeI | GAWTC | 4 cut(s) | 374, 441, 737, 773 |
| PkrI | GCNGC | 6 cut(s) | 295, 661, 751, 957, 960, 977 |
| PluTI | GGCGCC | 1 cut(s) | 8 |
| PpuMI | RGGWCCY | 1 cut(s) | 694 |
| Psp124BI | GAGCTC | 2 cut(s) | 23, 237 |
| Psp5II | RGGWCCY | 1 cut(s) | 694 |
| Psp6I | CCWGG | 1 cut(s) | 579 |
| PspEI | GGTNACC | 1 cut(s) | 329 |
| PspGI | CCWGG | 1 cut(s) | 579 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 585 |
| PspPI | GGNCC | 5 cut(s) | 13, 88, 146, 203, 694 |
| PspPPI | RGGWCCY | 1 cut(s) | 694 |
| PstNI | CAGNNNCTG | 1 cut(s) | 961 |
| PsuI | RGATCY | 1 cut(s) | 674 |
| PvuII | CAGCTG | 2 cut(s) | 659, 958 |
| RsaI | GTAC | 3 cut(s) | 412, 549, 554 |
| RsaNI | GTAC | 3 cut(s) | 411, 548, 553 |
| SacI | GAGCTC | 2 cut(s) | 23, 237 |
| SapI | GCTCTTC | 1 cut(s) | 143 |
| SaqAI | TTAA | 3 cut(s) | 348, 513, 1018 |
| SatI | GCNGC | 6 cut(s) | 294, 660, 750, 956, 959, 976 |
| Sau3AI | GATC | 8 cut(s) | 250, 258, 279, 351, 471, 537, 625, 674 |
| Sau96I | GGNCC | 5 cut(s) | 13, 88, 146, 203, 694 |
| ScrFI | CCNGG | 3 cut(s) | 153, 581, 712 |
| SduI | GDGCHC | 2 cut(s) | 23, 237 |
| SfaNI | GCATC | 1 cut(s) | 379 |
| SfoI | GGCGCC | 1 cut(s) | 6 |
| SinI | GGWCC | 4 cut(s) | 13, 88, 203, 694 |
| SmlI | CTYRAG | 1 cut(s) | 490 |
| SmoI | CTYRAG | 1 cut(s) | 490 |
| Sse9I | AATT | 6 cut(s) | 121, 457, 717, 801, 905, 1010 |
| SsiI | CCGC | 4 cut(s) | 91, 149, 174, 371 |
| SspDI | GGCGCC | 1 cut(s) | 4 |
| SspMI | CTAG | 3 cut(s) | 110, 222, 891 |
| SstI | GAGCTC | 2 cut(s) | 23, 237 |
| StyD4I | CCNGG | 3 cut(s) | 151, 579, 710 |
| StyI | CCWWGG | 1 cut(s) | 29 |
| TaaI | ACNGT | 2 cut(s) | 552, 840 |
| TaiI | ACGT | 1 cut(s) | 412 |
| TaqI | TCGA | 3 cut(s) | 36, 634, 735 |
| TasI | AATT | 6 cut(s) | 121, 457, 717, 801, 905, 1010 |
| TatI | WGTACW | 2 cut(s) | 547, 552 |
| TfiI | GAWTC | 4 cut(s) | 374, 441, 737, 773 |
| Tru1I | TTAA | 3 cut(s) | 348, 513, 1018 |
| Tru9I | TTAA | 3 cut(s) | 348, 513, 1018 |
| TscAI | CASTG | 3 cut(s) | 15, 163, 946 |
| TseFI | GTSAC | 2 cut(s) | 433, 941 |
| TseI | GCWGC | 6 cut(s) | 293, 659, 749, 955, 958, 975 |
| Tsp45I | GTSAC | 2 cut(s) | 433, 941 |
| TspDTI | ATGAA | 2 cut(s) | 729, 894 |
| TspRI | CASTG | 3 cut(s) | 15, 163, 946 |
| VpaK11BI | GGWCC | 4 cut(s) | 13, 88, 203, 694 |
| XapI | RAATTY | 1 cut(s) | 1010 |
| XbaI | TCTAGA | 1 cut(s) | 221 |
| XceI | RCATGY | 1 cut(s) | 1003 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 197 |
| XspI | CTAG | 3 cut(s) | 110, 222, 891 |