Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012087

Physical Location & Seq

Genomic Coordinates Forward (+)

40809268 .. 40812267

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0262100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1971 bp

ATGGGTGTCGAAAGCAAGCTTCGTTTGATCACGTATTCGGAAGAGATAGTAGATGGGCAACCGATCTATGTTTCTTCAAACGGTCTTCCTGTGAAGGCTGTGGGGAAAGAACCGGCTGGGCATTCTTTCCATGCGGTGGCTCTTAAGTTCCGTGGTTGGGTAGAGGAAGTTGCGAGTGCTGACGAGCCGAAGGCGGTTGACAGCAAGGAACAGACGTCTCTGCCGTCGTTTGATTCGTATAGCAGCAGCAAAGGTAAAAAGAAGTCGGGTGGTGAAGGGAAACAACAGGATCACTATGCGTTGCTAGGTTTGAGTCATTTAAGGTATCTCGCCACTGAGGAGCAGATAAGGAAAAGCTACCGTGAGACTGCCTTGAAATATCATCCTGACAAGCAGGCTTCGCTTCTGCTTGCTGAGGAAAGTGAAGCTGCCAAAGAGACAAAGAAGGATGAGATAGAGACCCACTTCAAGTCCATTCAAGAAGCGTATGAGGTCTTAATTGATCCTGTGAAGAGAAGAATCTACGACTCCACTGATGAGTTTGATGATGAGATCCCCACTGAATGTGCCCCACAGGATTTTTTCAAGGTGTTTGGTCCTGCTTTTATGAGGAATGGGCGGTGGTCAGTTACCCAACCAATCCCATTTTTAGGTGATGAGAATACTTCATTGAAGGAAGTAGATGAGTTTTATAACTTCTGGTACAGCTTCAAGAGCTGGAGAGAGTTCCCCCATGAGGAGGAGTTTGATCTTGAGCAAGCTGAATCTCGTGATCATAAGAGGTGGATGGAGAGGCAAAATGCAAAACTTACAGAAAAGGCTAGAAAGGAGGAGTATGCAAGGATACGTACTCTTGTTGACAATGCCTATAAAAGAGACCCTAGAATCGTGAAGAGAAAGGAAGCAGAGAAAGCTGAGAAGCAGAAGAAAAAGCAGGCCAAGTATTTGGCCAAGAAATTACAGGAGGAGGAAGCAGCCAGGGCAGCTGAAGAGGAGAAGCGACGGAAAGAGGAGGAGGAGAAGCGAGCTGCAGAAGCAGCGTCACAGCAGAAGAAACTAAGAGAGAAAGAGAAGAAACTGTTGCGCAAGGAGCGGAGTCGTCTGCGAACACTTTCTGGGCCTGTTATATCGCAGCGTGTGCTCAATCTTGCTGAGGATGATGTGGAAAGCCTTTGTATGTCTCTTAATATTGAGCAGCTTAGGAATATATGTGACAGGATGGAGGGCAAAGAGGGGGTAGAGCGAGCAAAAGTTCTTAGAGGTGCACATGGTGGAGATAACAATGATGTAGAGGGAAAGAAAGAAGAGGAGAAGAAAACTCCACAACTGAATGGTTCTGTGGTGAGTAATGGTACTGTTCTGTTAAGTAGCTATGAGAAGAAGGAGAAACCGTGGAGCAAAGAAGAGATTGAGCTTTTGAGAAAAGCAATTGTGAAATTTCCAAAAGGAACATCTCGAAGGTGGGAAGTTGTATCAGATTTCATTGGTACTGGAAGATCTGTGGAAGAAATTCTGAAGGCAACTAAAACAGTTCTCCTCCAGAAACCTGATTCTAGCAAAGCTTTTGATTCTTTTCTTGAAAAGAGGAAACCTGCACCATCTATTGACTCACCACTTACAACTAGAGTGGAAGTAGAAGGGGTATCATCAACTCCTCAGGAAACTGAAAACAGTGCTGACAAGAGTGCCAAGGCAGAAGATAAGTCTGGAGAGTCGTCAAGTGGAAGTGCAAAAGAGCAGAGTCCTAATGATCCAAATGCTGCAAATGGAGTATCCTCGAGTTCAGAGCAAGATGTGTGGTCAGCTGTACAAGAAAGGGCACTAGTTCAGGCCCTGAAAACCTTTCCAAAGGAAGCCAGTCAGCGGTGGGAGAGAGTTGCTGCTGCTGTTCCTGGGAAAAGTGTGAACCAATGCAAGAAGAAGTTTTCATTGCTGAAGGAGAGCTTCAGAAACAAGAAGAGCTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031390 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

AAA Rep_fac_C

Protein Analysis

656

Amino Acids

74.48

Weight (kDa)

8.53

Isoelectric Point (pI)

61.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	97 - 176	8.6e-17	DnaJ domain
ZUO1-like_ZHD	PF21884	193 - 296	4.9e-41	Zuotin-like, zuotin homology domain
Myb_DNA-binding_2	PF23082	463 - 532	1e-26	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	599 - 642	6.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21690 AT1G21690 AT1G21690 AT1G21690
fragaria_vesca	FvH4_2g27570 FvH4_2g27570
malus_domestica	MD15G1344500.v1.1
prunus_persica	Prupe.1G492200_v2.0.a1 Prupe.1G492200_v2.0.a1
pyrus_communis	pycom15g30770
rosa_chinensis	RchiOBHm_Chr6g0296411
rosa_laevigata	RLG00000011690
rosa_multiflora	Rmu_sc0008096.1_g000015
rosa_roxburghii	Rroxscaffold_7G00171570 Rroxscaffold_7G00178550
rosa_rugosa	Rorug06G0262100 Rorug06G0262200
rosa_samantha	Rh6BG381800
rosa_wichuraiana	Rw6G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
AatII	GACGTC	1 cut(s)	218
Acc16I	TGCGCA	1 cut(s)	1085
Acc36I	ACCTGC	1 cut(s)	1600
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccBSI	CCGCTC	1 cut(s)	1093
AciI	CCGC	5 cut(s)	134, 194, 619, 1093, 1864
AclWI	GGATC	4 cut(s)	297, 497, 547, 1745
AcoI	YGGCCR	1 cut(s)	948
AcsI	RAATTY	2 cut(s)	1436, 1509
AcuI	CTGAAG	4 cut(s)	1008, 1535, 1930, 1955
AcyI	GRCGYC	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	1271
AfaI	GTAC	5 cut(s)	704, 850, 1354, 1489, 1809
AfiI	CCNNNNNNNGG	6 cut(s)	136, 157, 650, 736, 739, 1863
AflII	CTTAAG	1 cut(s)	143
AgsI	TTSAA	8 cut(s)	78, 376, 469, 479, 586, 673, 712, 1580
AhlI	ACTAGT	1 cut(s)	1822
AjnI	CCWGG	2 cut(s)	977, 1891
Alw21I	GWGCWC	3 cut(s)	1143, 1267, 1964
Alw26I	GTCTC	6 cut(s)	222, 359, 431, 452, 870, 1185
Alw44I	GTGCAC	1 cut(s)	1263
AlwI	GGATC	4 cut(s)	297, 497, 547, 1745
AlwNI	CAGNNNCTG	1 cut(s)	1834
Ama87I	CYCGRG	1 cut(s)	1777
AoxI	GGCC	4 cut(s)	936, 948, 1118, 1830
ApaLI	GTGCAC	1 cut(s)	1263
ApoI	RAATTY	2 cut(s)	1436, 1509
Asp700I	GAANNNNTTC	2 cut(s)	1111, 1509
AspLEI	GCGC	1 cut(s)	1086
AspS9I	GGNCC	3 cut(s)	596, 1118, 1831
AsuHPI	GGTGA	4 cut(s)	284, 665, 1354, 1602
AvaI	CYCGRG	1 cut(s)	1777
AvaII	GGWCC	1 cut(s)	596
AxyI	CCTNAGG	1 cut(s)	1656
BaeGI	GKGCMC	3 cut(s)	571, 1267, 1822
BalI	TGGCCA	1 cut(s)	950
BanII	GRGCYC	1 cut(s)	1964
BauI	CACGAG	1 cut(s)	768
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	3 cut(s)	1143, 1267, 1964
BbvCI	CCTCAGC	2 cut(s)	414, 1152
BccI	CCATC	4 cut(s)	47, 781, 1213, 1606
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	2 cut(s)	979, 1893
BciVI	GTATCC	2 cut(s)	837, 1783
BclI	TGATCA	2 cut(s)	27, 772
BcoDI	GTCTC	6 cut(s)	222, 359, 431, 452, 870, 1185
BcuI	ACTAGT	1 cut(s)	1822
BfaI	CTAG	6 cut(s)	305, 822, 882, 1554, 1623, 1823
BfmI	CTRYAG	1 cut(s)	1029
BfrI	CTTAAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	1600
BfuI	GTATCC	2 cut(s)	837, 1783
BglII	AGATCT	1 cut(s)	1496
Bme1390I	CCNGG	2 cut(s)	979, 1893
Bme18I	GGWCC	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	1777
BmgT120I	GGNCC	3 cut(s)	596, 1118, 1831
BmrFI	CCNGG	2 cut(s)	979, 1893
BpiI	GAAGAC	1 cut(s)	77
BpmI	CTGGAG	3 cut(s)	739, 1523, 1728
Bpu10I	CCTNAGC	3 cut(s)	414, 1152, 1199
BpuEI	CTTGAG	1 cut(s)	773
BsaAI	YACGTR	2 cut(s)	33, 848
BsaHI	GRCGYC	1 cut(s)	215
BsaI	GGTCTC	2 cut(s)	452, 870
BsaJI	CCNNGG	5 cut(s)	151, 978, 1391, 1689, 1892
BsaXI	ACNNNNNCTCC	2 cut(s)	1376, 1406
Bsc4I	CCNNNNNNNGG	6 cut(s)	136, 157, 650, 736, 739, 1863
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	1495, 1857
Bse21I	CCTNAGG	1 cut(s)	1656
Bse3DI	GCAATG	1 cut(s)	1928
BseBI	CCWGG	2 cut(s)	979, 1893
BseDI	CCNNGG	5 cut(s)	151, 978, 1391, 1689, 1892
BseGI	GGATG	5 cut(s)	382, 454, 792, 1162, 1224
BseLI	CCNNNNNNNGG	6 cut(s)	136, 157, 650, 736, 739, 1863
BseMI	GCAATG	1 cut(s)	1928
BseMII	CTCAG	5 cut(s)	327, 405, 906, 1143, 1670
BseNI	ACTGG	2 cut(s)	1495, 1857
BseSI	GKGCMC	3 cut(s)	571, 1267, 1822
BseYI	CCCAGC	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	1578
BshFI	GGCC	4 cut(s)	938, 950, 1120, 1832
BsiHKAI	GWGCWC	3 cut(s)	1143, 1267, 1964
BsiHKCI	CYCGRG	1 cut(s)	1777
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	6 cut(s)	136, 157, 650, 736, 739, 1863
BsmAI	GTCTC	6 cut(s)	222, 359, 431, 452, 870, 1185
BsmBI	CGTCTC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	4 cut(s)	938, 950, 1120, 1832
Bso31I	GGTCTC	2 cut(s)	452, 870
BsoBI	CYCGRG	1 cut(s)	1777
Bsp1286I	GDGCHC	5 cut(s)	571, 1143, 1267, 1822, 1964
Bsp1407I	TGTACA	1 cut(s)	1807
Bsp143I	GATC	9 cut(s)	27, 63, 289, 502, 552, 748, 772, 1496, 1750
BspACI	CCGC	5 cut(s)	134, 194, 619, 1093, 1864
BspANI	GGCC	4 cut(s)	938, 950, 1120, 1832
BspCNI	CTCAG	5 cut(s)	328, 406, 907, 1144, 1669
BspMAI	CTGCAG	1 cut(s)	1033
BspMI	ACCTGC	1 cut(s)	1600
BspPI	GGATC	4 cut(s)	297, 497, 547, 1745
BspQI	GCTCTTC	1 cut(s)	1952
BspTI	CTTAAG	1 cut(s)	143
BspTNI	GGTCTC	2 cut(s)	452, 870
BsrBI	CCGCTC	1 cut(s)	1093
BsrDI	GCAATG	1 cut(s)	1928
BsrFI	RCCGGY	1 cut(s)	112
BsrGI	TGTACA	1 cut(s)	1807
BsrI	ACTGG	2 cut(s)	1495, 1857
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	5 cut(s)	151, 978, 1391, 1689, 1892
BssMI	GATC	9 cut(s)	27, 63, 289, 502, 552, 748, 772, 1496, 1750
BssNI	GRCGYC	1 cut(s)	215
BssSI	CACGAG	1 cut(s)	768
BssT1I	CCWWGG	1 cut(s)	1689
Bst2BI	CACGAG	1 cut(s)	768
Bst2UI	CCWGG	2 cut(s)	979, 1893
Bst4CI	ACNGT	7 cut(s)	83, 362, 1080, 1357, 1392, 1531, 1673
Bst6I	CTCTTC	7 cut(s)	36, 506, 887, 984, 1299, 1398, 1952
BstACI	GRCGYC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	1138
BstAUI	TGTACA	1 cut(s)	1807
BstBAI	YACGTR	2 cut(s)	33, 848
BstC8I	GCNNGC	7 cut(s)	17, 396, 411, 759, 936, 1026, 1245
BstDEI	CTNAG	8 cut(s)	336, 414, 915, 1058, 1152, 1199, 1256, 1656
BstDSI	CCRYGG	2 cut(s)	151, 1391
BstF5I	GGATG	5 cut(s)	382, 454, 792, 1162, 1224
BstHHI	GCGC	1 cut(s)	1086
BstKTI	GATC	9 cut(s)	30, 66, 292, 505, 555, 751, 775, 1499, 1753
BstMAI	GTCTC	6 cut(s)	222, 359, 431, 452, 870, 1185
BstMBI	GATC	9 cut(s)	27, 63, 289, 502, 552, 748, 772, 1496, 1750
BstMWI	GCNNNNNNNGC	9 cut(s)	400, 714, 911, 980, 983, 1034, 1037, 1090, 1138
BstNI	CCWGG	2 cut(s)	979, 1893
BstSCI	CCNGG	2 cut(s)	977, 1891
BstSFI	CTRYAG	1 cut(s)	1029
BstSLI	GKGCMC	3 cut(s)	571, 1267, 1822
BstSNI	TACGTA	1 cut(s)	848
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	2 cut(s)	552, 1496
BstXI	CCANNNNNNTGG	1 cut(s)	946
BstYI	RGATCY	2 cut(s)	552, 1496
Bsu36I	CCTNAGG	1 cut(s)	1656
BsuI	GTATCC	2 cut(s)	837, 1783
BsuRI	GGCC	4 cut(s)	938, 950, 1120, 1832
BtgI	CCRYGG	2 cut(s)	151, 1391
BtsCI	GGATG	5 cut(s)	382, 454, 792, 1162, 1224
BtsIMutI	CAGTG	4 cut(s)	333, 531, 558, 1678
BveI	ACCTGC	1 cut(s)	1600
Cac8I	GCNNGC	7 cut(s)	17, 396, 411, 759, 936, 1026, 1245
CaiI	CAGNNNCTG	1 cut(s)	1834
CfoI	GCGC	1 cut(s)	1086
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	596, 1118, 1831
CseI	GACGC	1 cut(s)	1029
Csp6I	GTAC	5 cut(s)	703, 849, 1353, 1488, 1808
CspCI	CAANNNNNGTGG	4 cut(s)	1608, 1643, 1778, 1813
CviAII	CATG	3 cut(s)	131, 734, 1268
CviQI	GTAC	5 cut(s)	703, 849, 1353, 1488, 1808
DdeI	CTNAG	8 cut(s)	336, 414, 915, 1058, 1152, 1199, 1256, 1656
DpnI	GATC	9 cut(s)	29, 65, 291, 504, 554, 750, 774, 1498, 1752
DpnII	GATC	9 cut(s)	27, 63, 289, 502, 552, 748, 772, 1496, 1750
DraIII	CACNNNGTG	1 cut(s)	1271
EaeI	YGGCCR	1 cut(s)	948
Eam1104I	CTCTTC	7 cut(s)	36, 506, 887, 984, 1299, 1398, 1952
EarI	CTCTTC	7 cut(s)	36, 506, 887, 984, 1299, 1398, 1952
Ecl136II	GAGCTC	1 cut(s)	1962
Eco105I	TACGTA	1 cut(s)	848
Eco130I	CCWWGG	1 cut(s)	1689
Eco24I	GRGCYC	1 cut(s)	1964
Eco31I	GGTCTC	2 cut(s)	452, 870
Eco47I	GGWCC	1 cut(s)	596
Eco53kI	GAGCTC	1 cut(s)	1962
Eco57I	CTGAAG	4 cut(s)	1008, 1535, 1930, 1955
Eco81I	CCTNAGG	1 cut(s)	1656
Eco88I	CYCGRG	1 cut(s)	1777
EcoICRI	GAGCTC	1 cut(s)	1962
EcoO109I	RGGNCCY	1 cut(s)	1831
EcoRII	CCWGG	2 cut(s)	977, 1891
EcoT14I	CCWWGG	1 cut(s)	1689
EcoT38I	GRGCYC	1 cut(s)	1964
ErhI	CCWWGG	1 cut(s)	1689
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	3 cut(s)	134, 737, 1271
FalI	AAGNNNNNCTT	2 cut(s)	1928, 1960
FatI	CATG	3 cut(s)	130, 733, 1267
FbaI	TGATCA	2 cut(s)	27, 772
FokI	GGATG	5 cut(s)	369, 461, 799, 1169, 1231
FriOI	GRGCYC	1 cut(s)	1964
FspBI	CTAG	6 cut(s)	305, 822, 882, 1554, 1623, 1823
FspI	TGCGCA	1 cut(s)	1085
GlaI	GCGC	1 cut(s)	1085
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	3 cut(s)	739, 1523, 1728
HaeIII	GGCC	4 cut(s)	938, 950, 1120, 1832
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	1029
HhaI	GCGC	1 cut(s)	1086
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	134, 737, 1271
Hin6I	GCGC	1 cut(s)	1084
HinP1I	GCGC	1 cut(s)	1084
HincII	GTYRAC	2 cut(s)	199, 859
HindII	GTYRAC	2 cut(s)	199, 859
HindIII	AAGCTT	2 cut(s)	17, 1560
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	4 cut(s)	284, 665, 1354, 1602
Hpy166II	GTNNAC	4 cut(s)	199, 859, 1265, 1906
Hpy188I	TCNGA	5 cut(s)	40, 1477, 1515, 1786, 1949
Hpy8I	GTNNAC	4 cut(s)	199, 859, 1265, 1906
Hpy99I	CGWCG	2 cut(s)	229, 1005
HpyCH4III	ACNGT	7 cut(s)	83, 362, 1080, 1357, 1392, 1531, 1673
HpyCH4IV	ACGT	3 cut(s)	32, 215, 847
HpyCH4V	TGCA	9 cut(s)	803, 839, 1031, 1265, 1595, 1730, 1763, 1914, 1967
HpyF10VI	GCNNNNNNNGC	9 cut(s)	400, 714, 911, 980, 983, 1034, 1037, 1090, 1138
HpyF3I	CTNAG	8 cut(s)	336, 414, 915, 1058, 1152, 1199, 1256, 1656
HpySE526I	ACGT	3 cut(s)	32, 215, 847
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	3 cut(s)	134, 737, 1271
HspAI	GCGC	1 cut(s)	1084
Ksp22I	TGATCA	2 cut(s)	27, 772
Kzo9I	GATC	9 cut(s)	27, 63, 289, 502, 552, 748, 772, 1496, 1750
LguI	GCTCTTC	1 cut(s)	1952
LmnI	GCTCC	3 cut(s)	340, 1090, 1395
MaeI	CTAG	6 cut(s)	305, 822, 882, 1554, 1623, 1823
MaeII	ACGT	3 cut(s)	32, 215, 847
MaeIII	GTNAC	3 cut(s)	628, 1041, 1211
MalI	GATC	9 cut(s)	29, 65, 291, 504, 554, 750, 774, 1498, 1752
MbiI	CCGCTC	1 cut(s)	1093
MboI	GATC	9 cut(s)	27, 63, 289, 502, 552, 748, 772, 1496, 1750
MfeI	CAATTG	1 cut(s)	1428
MflI	RGATCY	2 cut(s)	552, 1496
MhlI	GDGCHC	5 cut(s)	571, 1143, 1267, 1822, 1964
MlsI	TGGCCA	1 cut(s)	950
MluCI	AATT	5 cut(s)	498, 956, 1428, 1436, 1509
MluNI	TGGCCA	1 cut(s)	950
MlyI	GAGTC	6 cut(s)	322, 521, 1105, 1601, 1721, 1750
Mox20I	TGGCCA	1 cut(s)	950
MroXI	GAANNNNTTC	2 cut(s)	1111, 1509
MscI	TGGCCA	1 cut(s)	950
MseI	TTAA	5 cut(s)	144, 320, 497, 1185, 1364
Msp20I	TGGCCA	1 cut(s)	950
MspA1I	CMGCKG	3 cut(s)	986, 1805, 1864
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	979, 1893
MunI	CAATTG	1 cut(s)	1428
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	2 cut(s)	979, 1893
MwoI	GCNNNNNNNGC	9 cut(s)	400, 714, 911, 980, 983, 1034, 1037, 1090, 1138
NdeII	GATC	9 cut(s)	27, 63, 289, 502, 552, 748, 772, 1496, 1750
NlaIII	CATG	3 cut(s)	134, 737, 1271
NmuCI	GTSAC	2 cut(s)	1041, 1211
NsbI	TGCGCA	1 cut(s)	1085
PaeR7I	CTCGAG	1 cut(s)	1777
PciSI	GCTCTTC	1 cut(s)	1952
PcsI	WCGNNNNNNNCGW	2 cut(s)	221, 233
PctI	GAATGC	1 cut(s)	121
PdmI	GAANNNNTTC	2 cut(s)	1111, 1509
PfeI	GAWTC	6 cut(s)	233, 519, 764, 885, 1550, 1568
PflMI	CCANNNNNTGG	1 cut(s)	136
PleI	GAGTC	6 cut(s)	321, 521, 1104, 1601, 1720, 1749
PpsI	GAGTC	6 cut(s)	321, 521, 1104, 1601, 1720, 1749
Ppu21I	YACGTR	2 cut(s)	33, 848
PsiI	TTATAA	1 cut(s)	693
Psp124BI	GAGCTC	1 cut(s)	1964
Psp6I	CCWGG	2 cut(s)	977, 1891
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	2 cut(s)	977, 1891
PspPI	GGNCC	3 cut(s)	596, 1118, 1831
PspXI	VCTCGAGB	1 cut(s)	1777
PstI	CTGCAG	1 cut(s)	1033
PstNI	CAGNNNCTG	1 cut(s)	1834
PsuI	RGATCY	2 cut(s)	552, 1496
PvuII	CAGCTG	2 cut(s)	986, 1805
RsaI	GTAC	5 cut(s)	704, 850, 1354, 1489, 1809
RsaNI	GTAC	5 cut(s)	703, 849, 1353, 1488, 1808
SacI	GAGCTC	1 cut(s)	1964
SapI	GCTCTTC	1 cut(s)	1952
SaqAI	TTAA	5 cut(s)	144, 320, 497, 1185, 1364
Sau3AI	GATC	9 cut(s)	27, 63, 289, 502, 552, 748, 772, 1496, 1750
Sau96I	GGNCC	3 cut(s)	596, 1118, 1831
SchI	GAGTC	6 cut(s)	322, 521, 1105, 1601, 1721, 1750
ScrFI	CCNGG	2 cut(s)	979, 1893
SduI	GDGCHC	5 cut(s)	571, 1143, 1267, 1822, 1964
SfcI	CTRYAG	1 cut(s)	1029
Sfr274I	CTCGAG	1 cut(s)	1777
SinI	GGWCC	1 cut(s)	596
SlaI	CTCGAG	1 cut(s)	1777
SmlI	CTYRAG	3 cut(s)	143, 752, 1777
SmoI	CTYRAG	3 cut(s)	143, 752, 1777
SnaBI	TACGTA	1 cut(s)	848
SpeI	ACTAGT	1 cut(s)	1822
Sse9I	AATT	5 cut(s)	498, 956, 1428, 1436, 1509
SsiI	CCGC	5 cut(s)	134, 194, 619, 1093, 1864
SspI	AATATT	1 cut(s)	1189
SspMI	CTAG	6 cut(s)	305, 822, 882, 1554, 1623, 1823
SstI	GAGCTC	1 cut(s)	1964
StyD4I	CCNGG	2 cut(s)	977, 1891
StyI	CCWWGG	1 cut(s)	1689
TaaI	ACNGT	7 cut(s)	83, 362, 1080, 1357, 1392, 1531, 1673
TaiI	ACGT	3 cut(s)	35, 218, 850
TaqI	TCGA	3 cut(s)	9, 1456, 1778
TasI	AATT	5 cut(s)	498, 956, 1428, 1436, 1509
TatI	WGTACW	1 cut(s)	1807
TfiI	GAWTC	6 cut(s)	233, 519, 764, 885, 1550, 1568
Tru1I	TTAA	5 cut(s)	144, 320, 497, 1185, 1364
Tru9I	TTAA	5 cut(s)	144, 320, 497, 1185, 1364
TscAI	CASTG	4 cut(s)	340, 538, 565, 1678
TseFI	GTSAC	2 cut(s)	1041, 1211
Tsp45I	GTSAC	2 cut(s)	1041, 1211
TspDTI	ATGAA	3 cut(s)	657, 1471, 1917
TspGWI	ACGGA	2 cut(s)	140, 1018
TspRI	CASTG	4 cut(s)	340, 538, 565, 1678
Van91I	CCANNNNNTGG	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	1263
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	2 cut(s)	1436, 1509
XhoI	CTCGAG	1 cut(s)	1777
XmnI	GAANNNNTTC	2 cut(s)	1111, 1509
XspI	CTAG	6 cut(s)	305, 822, 882, 1554, 1623, 1823
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.