Rroxscaffold_7G00171570

Replication factor C subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
11852588 .. 11857025
4438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171570.1

Sequence Viewer

Length: 1056 bp
ATGGAAGGTTGGTCGACCGGAGCCATTATTGCTTATGGCGGCAAGAACAACTTGGGGCCAGCTAGGTTTTTTCTTGATGGACTTTGTAGGTCGATGGTTGGGCCCCGAGCTTTGCAATTGATCTTGGGCCTGCTTTCTCTTGGGTCTAGAATAACTAATGGTCGGCCGAAGCAAGTGAAAGATGTGGCTCAGCAGGATGAGGTGGTCCGCGTCCTCACCAACACCCTAGAGACCTCAAATTGTCCTCATATGCTCTTCTATGGCCCGCCCGGCACTGGAAAAACCACCACCGCTCTCGCCATTGCCCACCAGCTTTTTGGACCTGAACTCTACAAGTCTAGAGTTTTGGAGCTCAATGCAAGTGATGATCGTGGGATCAATGTTGTTCGGACAAAGATCAAAGACTTTGCTGCTGTCGCTGGTTACCCTTGTCCACCATTTAAGATCATTATTCTTGATGAGGCGGATTCAATGACAGAAGATGCTCAGCCACTTGCCTCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTTTCAGAAGATATAATGATCACCCGTGTACTGCACATTTGCCAAGAAGAAGGACTTGACCTGGAGCCAGAGGTTCTGTCAACACTAAGTTCTATCTCACAAGGTGATCTTCGTCGCGCTATCACATATTTGCAGGTAATTCCACAAGAGGTTGTCGATTCATTTTTTGCTGCTTGCAGAAGTGGCAACTTTGATTTGGCAAACAAGGAAGTCAACAATGTAATTGCAGAAGGATATCCAGTCTCCCAAATGTTTTCACAGGTTCCATGTTTGCTCTTTTACTTTTGTTGCTCTGAGTTCATAATGCTTGTCATAGAAATATGGATACTAATAGAATGTTGCTTCCAGTTGTTTGAGATTGTGGTTGGAGCAGATGATATATCAGATGAACAGAAGGCTAGAATATGCAAGAAATTGGGCGAAGCAGATAAGCATCTTGTTGATGGCAGTGACGAATACTTGCAGCTGCTGGATGTTGCAAGCAGCGCAATGCGAGCTATCTGTAACATGCAAGAAGAATTCTCTTAA

Protein Analysis

351

Amino Acids

38.84

Weight (kDa)

4.88

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 84 - 162 6.8e-12 ATPase family associated with various cellular activities (AAA)
AAA_lid_RFC1 PF25361 184 - 222 4.9e-07 RFC1-like, AAA+ ATPase lid domain
RCF1-5-like_lid PF21960 188 - 221 3.7e-07 RCF1/5-like, AAA+ ATPase lid domain
Rep_fac_C PF08542 292 - 337 4.6e-09 Replication factor C C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012087)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 652
AccBSI CCGCTC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 14
AccII CGCG 2 cut(s) 210, 645
AciI CCGC 5 cut(s) 39, 208, 266, 291, 464
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 1 cut(s) 1046
AdeI CACNNNGTG 1 cut(s) 632
AfaI GTAC 1 cut(s) 558
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 471
AjnI CCWGG 1 cut(s) 588
AluBI AGCT 6 cut(s) 62, 110, 313, 352, 994, 1025
AluI AGCT 6 cut(s) 62, 110, 313, 352, 994, 1025
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 2 cut(s) 224, 775
AlwI GGATC 1 cut(s) 383
AlwNI CAGNNNCTG 1 cut(s) 997
Ama87I CYCGRG 1 cut(s) 105
AoxI GGCC 5 cut(s) 56, 101, 127, 164, 262
ApaI GGGCCC 1 cut(s) 105
ApeKI GCWGC 5 cut(s) 410, 698, 991, 994, 1011
ApoI RAATTY 1 cut(s) 1046
AspLEI GCGC 2 cut(s) 647, 1016
AspS9I GGNCC 7 cut(s) 56, 101, 102, 127, 205, 263, 320
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 3 cut(s) 208, 541, 644
AvaI CYCGRG 1 cut(s) 105
AvaII GGWCC 2 cut(s) 205, 320
BaeGI GKGCMC 1 cut(s) 105
BanII GRGCYC 2 cut(s) 105, 354
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 5 cut(s) 397, 685, 981, 1003, 1023
BccI CCATC 3 cut(s) 71, 88, 965
BciT130I CCWGG 1 cut(s) 590
BciVI GTATCC 1 cut(s) 846
BclI TGATCA 1 cut(s) 546
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 224, 775
BfaI CTAG 5 cut(s) 63, 147, 227, 339, 927
BfuAI ACCTGC 1 cut(s) 652
BfuI GTATCC 1 cut(s) 846
BglI GCCNNNNNGGC 1 cut(s) 270
BisI GCNGC 6 cut(s) 40, 411, 699, 992, 995, 1012
BlpI GCTNAGC 2 cut(s) 189, 486
BlsI GCNGC 6 cut(s) 41, 412, 700, 993, 996, 1013
Bme1390I CCNGG 2 cut(s) 270, 590
Bme18I GGWCC 2 cut(s) 205, 320
BmeT110I CYCGRG 1 cut(s) 105
BmgT120I GGNCC 7 cut(s) 56, 101, 102, 127, 205, 263, 320
BmiI GGNNCC 6 cut(s) 22, 57, 103, 104, 594, 792
BmrFI CCNGG 2 cut(s) 270, 590
BmsI GCATC 2 cut(s) 472, 970
BpmI CTGGAG 1 cut(s) 611
Bpu1102I GCTNAGC 2 cut(s) 189, 486
BpuEI CTTGAG 1 cut(s) 484
BpuMI CCSGG 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 960
BsaI GGTCTC 1 cut(s) 224
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 3 cut(s) 280, 767, 874
Bse3DI GCAATG 2 cut(s) 300, 1023
Bse8I GATNNNNATC 1 cut(s) 960
BseBI CCWGG 1 cut(s) 590
BseGI GGATG 2 cut(s) 202, 1006
BseJI GATNNNNATC 1 cut(s) 960
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 2 cut(s) 300, 1023
BseMII CTCAG 3 cut(s) 203, 500, 813
BseNI ACTGG 3 cut(s) 280, 767, 874
BseSI GKGCMC 1 cut(s) 105
BseX3I CGGCCG 1 cut(s) 164
BseXI GCAGC 5 cut(s) 397, 685, 981, 1003, 1023
BsgI GTGCAG 1 cut(s) 545
Bsh1236I CGCG 2 cut(s) 210, 645
Bsh1285I CGRYCG 2 cut(s) 18, 167
BshFI GGCC 5 cut(s) 58, 103, 129, 166, 264
BsiEI CGRYCG 2 cut(s) 18, 167
BsiHKAI GWGCWC 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 105
BsiSI CCGG 2 cut(s) 18, 270
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 224, 775
BsnI GGCC 5 cut(s) 58, 103, 129, 166, 264
Bso31I GGTCTC 1 cut(s) 224
BsoBI CYCGRG 1 cut(s) 105
Bsp120I GGGCCC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 105, 354
Bsp143I GATC 7 cut(s) 120, 367, 375, 396, 444, 546, 634
Bsp1720I GCTNAGC 2 cut(s) 189, 486
BspACI CCGC 5 cut(s) 39, 208, 266, 291, 464
BspANI GGCC 5 cut(s) 58, 103, 129, 166, 264
BspCNI CTCAG 3 cut(s) 202, 499, 814
BspFNI CGCG 2 cut(s) 210, 645
BspLI GGNNCC 6 cut(s) 22, 57, 103, 104, 594, 792
BspMI ACCTGC 1 cut(s) 652
BspPI GGATC 1 cut(s) 383
BspQI GCTCTTC 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 293
BsrDI GCAATG 2 cut(s) 300, 1023
BsrI ACTGG 3 cut(s) 280, 767, 874
BssMI GATC 7 cut(s) 120, 367, 375, 396, 444, 546, 634
Bst2UI CCWGG 1 cut(s) 590
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 6 cut(s) 60, 131, 266, 703, 1009, 1023
BstDEI CTNAG 4 cut(s) 189, 486, 614, 822
BstEII GGTNACC 1 cut(s) 422
BstF5I GGATG 2 cut(s) 202, 1006
BstFNI CGCG 2 cut(s) 210, 645
BstHHI GCGC 2 cut(s) 647, 1016
BstKTI GATC 7 cut(s) 123, 370, 378, 399, 447, 549, 637
BstMAI GTCTC 2 cut(s) 224, 775
BstMBI GATC 7 cut(s) 120, 367, 375, 396, 444, 546, 634
BstMCI CGRYCG 2 cut(s) 18, 167
BstMWI GCNNNNNNNGC 6 cut(s) 29, 270, 416, 711, 1013, 1022
BstNI CCWGG 1 cut(s) 590
BstNSI RCATGY 1 cut(s) 1039
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 268, 588
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 2 cut(s) 210, 645
BstV1I GCAGC 5 cut(s) 397, 685, 981, 1003, 1023
BstXI CCANNNNNNTGG 1 cut(s) 317
BstZI CGGCCG 1 cut(s) 164
BsuI GTATCC 1 cut(s) 846
BsuRI GGCC 5 cut(s) 58, 103, 129, 166, 264
BtsCI GGATG 2 cut(s) 202, 1006
BtsI GCAGTG 1 cut(s) 982
BtsIMutI CAGTG 2 cut(s) 273, 982
BveI ACCTGC 1 cut(s) 652
Cac8I GCNNGC 6 cut(s) 60, 131, 266, 703, 1009, 1023
CaiI CAGNNNCTG 1 cut(s) 997
CfoI GCGC 2 cut(s) 647, 1016
Cfr13I GGNCC 7 cut(s) 56, 101, 102, 127, 205, 263, 320
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 557
CviAII CATG 2 cut(s) 795, 1036
CviQI GTAC 1 cut(s) 557
DdeI CTNAG 4 cut(s) 189, 486, 614, 822
DpnI GATC 7 cut(s) 122, 369, 377, 398, 446, 548, 636
DpnII GATC 7 cut(s) 120, 367, 375, 396, 444, 546, 634
DraIII CACNNNGTG 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 164
EagI CGGCCG 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 479
Ecl136II GAGCTC 1 cut(s) 352
EclXI CGGCCG 1 cut(s) 164
Eco24I GRGCYC 2 cut(s) 105, 354
Eco31I GGTCTC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 764
Eco47I GGWCC 2 cut(s) 205, 320
Eco52I CGGCCG 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 105
Eco91I GGTNACC 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 102
EcoO65I GGTNACC 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 1046
EcoRII CCWGG 1 cut(s) 588
EcoRV GATATC 1 cut(s) 764
EcoT38I GRGCYC 2 cut(s) 105, 354
FaeI CATG 2 cut(s) 798, 1039
FalI AAGNNNNNCTT 6 cut(s) 35, 67, 567, 599, 621, 653
FatI CATG 2 cut(s) 794, 1035
FauI CCCGC 1 cut(s) 273
FauNDI CATATG 1 cut(s) 249
FbaI TGATCA 1 cut(s) 546
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 6 cut(s) 40, 411, 699, 992, 995, 1012
FokI GGATG 2 cut(s) 209, 1013
FriOI GRGCYC 2 cut(s) 105, 354
Fsp4HI GCNGC 6 cut(s) 40, 411, 699, 992, 995, 1012
FspBI CTAG 5 cut(s) 63, 147, 227, 339, 927
GlaI GCGC 2 cut(s) 646, 1015
GluI GCNGC 6 cut(s) 40, 411, 699, 992, 995, 1012
GsuI CTGGAG 1 cut(s) 611
HaeIII GGCC 5 cut(s) 58, 103, 129, 166, 264
HapII CCGG 2 cut(s) 18, 270
HgaI GACGC 1 cut(s) 199
HhaI GCGC 2 cut(s) 647, 1016
Hin1II CATG 2 cut(s) 798, 1039
Hin6I GCGC 2 cut(s) 645, 1014
HinP1I GCGC 2 cut(s) 645, 1014
HincII GTYRAC 3 cut(s) 15, 609, 742
HindII GTYRAC 3 cut(s) 15, 609, 742
HinfI GANTC 2 cut(s) 467, 686
HpaII CCGG 2 cut(s) 18, 270
HphI GGTGA 3 cut(s) 208, 541, 644
Hpy166II GTNNAC 5 cut(s) 15, 434, 557, 609, 742
Hpy188I TCNGA 4 cut(s) 390, 535, 823, 913
Hpy188III TCNNGA 4 cut(s) 74, 147, 339, 455
Hpy8I GTNNAC 5 cut(s) 15, 434, 557, 609, 742
Hpy99I CGWCG 1 cut(s) 645
HpyAV CCTTC 3 cut(s) 572, 752, 916
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 270, 416, 711, 1013, 1022
HpyF3I CTNAG 4 cut(s) 189, 486, 614, 822
Hsp92II CATG 2 cut(s) 798, 1039
HspAI GCGC 2 cut(s) 645, 1014
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 7 cut(s) 120, 367, 375, 396, 444, 546, 634
LguI GCTCTTC 1 cut(s) 260
LmnI GCTCC 4 cut(s) 20, 349, 592, 896
Lsp1109I GCAGC 5 cut(s) 397, 685, 981, 1003, 1023
LweI GCATC 2 cut(s) 472, 970
MaeI CTAG 5 cut(s) 63, 147, 227, 339, 927
MaeIII GTNAC 3 cut(s) 422, 977, 1031
MalI GATC 7 cut(s) 122, 369, 377, 398, 446, 548, 636
MbiI CCGCTC 1 cut(s) 293
MboI GATC 7 cut(s) 120, 367, 375, 396, 444, 546, 634
MboII GAAGA 6 cut(s) 247, 491, 548, 587, 629, 1055
MfeI CAATTG 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 105, 354
MluCI AATT 6 cut(s) 116, 238, 666, 750, 941, 1046
MmeI TCCRAC 1 cut(s) 874
MnlI CCTC 8 cut(s) 193, 224, 244, 255, 454, 508, 592, 670
MseI TTAA 3 cut(s) 441, 522, 1054
MspA1I CMGCKG 1 cut(s) 994
MspI CCGG 2 cut(s) 18, 270
MspR9I CCNGG 2 cut(s) 270, 590
MunI CAATTG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 590
MvnI CGCG 2 cut(s) 210, 645
MwoI GCNNNNNNNGC 6 cut(s) 29, 270, 416, 711, 1013, 1022
NciI CCSGG 1 cut(s) 270
NdeI CATATG 1 cut(s) 249
NdeII GATC 7 cut(s) 120, 367, 375, 396, 444, 546, 634
NlaIII CATG 2 cut(s) 798, 1039
NlaIV GGNNCC 6 cut(s) 22, 57, 103, 104, 594, 792
NmuCI GTSAC 1 cut(s) 977
NspI RCATGY 1 cut(s) 1039
PciSI GCTCTTC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 467, 686
PkrI GCNGC 6 cut(s) 41, 412, 700, 993, 996, 1013
Psp124BI GAGCTC 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 588
PspEI GGTNACC 1 cut(s) 422
PspGI CCWGG 1 cut(s) 588
PspN4I GGNNCC 6 cut(s) 22, 57, 103, 104, 594, 792
PspOMI GGGCCC 1 cut(s) 101
PspPI GGNCC 7 cut(s) 56, 101, 102, 127, 205, 263, 320
PstNI CAGNNNCTG 1 cut(s) 997
PvuII CAGCTG 1 cut(s) 994
RsaI GTAC 1 cut(s) 558
RsaNI GTAC 1 cut(s) 557
SacI GAGCTC 1 cut(s) 354
SalI GTCGAC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 260
SaqAI TTAA 3 cut(s) 441, 522, 1054
SatI GCNGC 6 cut(s) 40, 411, 699, 992, 995, 1012
Sau3AI GATC 7 cut(s) 120, 367, 375, 396, 444, 546, 634
Sau96I GGNCC 7 cut(s) 56, 101, 102, 127, 205, 263, 320
ScrFI CCNGG 2 cut(s) 270, 590
SduI GDGCHC 2 cut(s) 105, 354
SfaNI GCATC 2 cut(s) 472, 970
SinI GGWCC 2 cut(s) 205, 320
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
Sse9I AATT 6 cut(s) 116, 238, 666, 750, 941, 1046
SsiI CCGC 5 cut(s) 39, 208, 266, 291, 464
SspMI CTAG 5 cut(s) 63, 147, 227, 339, 927
SstI GAGCTC 1 cut(s) 354
StyD4I CCNGG 2 cut(s) 268, 588
TaqI TCGA 3 cut(s) 14, 92, 684
TasI AATT 6 cut(s) 116, 238, 666, 750, 941, 1046
TatI WGTACW 1 cut(s) 556
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 467, 686
Tru1I TTAA 3 cut(s) 441, 522, 1054
Tru9I TTAA 3 cut(s) 441, 522, 1054
TscAI CASTG 2 cut(s) 280, 982
TseFI GTSAC 1 cut(s) 977
TseI GCWGC 5 cut(s) 410, 698, 991, 994, 1011
Tsp45I GTSAC 1 cut(s) 977
TspDTI ATGAA 3 cut(s) 678, 817, 930
TspRI CASTG 2 cut(s) 280, 982
VpaK11BI GGWCC 2 cut(s) 205, 320
XapI RAATTY 1 cut(s) 1046
XbaI TCTAGA 2 cut(s) 146, 338
XceI RCATGY 1 cut(s) 1039
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 5 cut(s) 63, 147, 227, 339, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.