Prupe.1G492200_v2.0.a1

Replication factor C subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
40930363 .. 40934385
4023 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G492200.2

Sequence Viewer

Length: 1020 bp
ATGGCGCCACTGGTGCAAAGCTCTCAACCATGGGTCGAAAAATATCGGCCGAAGCAAGTGAAAGATGTGGCTCAGCAGGACGAGGTGGTTCGGGTCCTCACCAACACCCTCGAGACCTCAAATTGTCCGCACATGCTCTTCTACGGTCCACCGGGCACCGGAAAAACCACCACTGCTCTCGCCATTGCCCACCAGCTTTTCGGACCTGAACTCTACAAGTCTAGAGTGTTGGAGCTCAATGCAAGTGATGATCGTGGGATCAATGTTGTTCGGACAAAGATCAAAGATTTTGCTGCTGTGGCTGTGGGTTCTGCTCAACGTCAAGGGGGTTATCCTTGTCCACCATTTAAGATCATTATCCTAGATGAGGCGGATTCAATGACAGAAGATGCTCAGAATGCTCTAAGACGTACAATGGAAACCTACTCCAAAGTCACAAGATTCTTTTTTATATGTAATTATATCAGCAGGATCATAGAGCCACTTGCTTCAAGATGTGCAAAGTTTAGGTTTAAGCCACTTTCAGAAGAAATCATGATCAGCCGCGTATTGCATATTTGCCAAGAAGAAGGCCTCAACCTAGATCCAGAAGTTCTGTCAACACTAAGTTCTATCTCACAAGGTGATCTTCGTCGGGCTATTACATACTTGCAGTCAGCTGCGCGCTTATTTGGATCTTCCATTTCTAAGAAGGAGCTGATTAGTGTCTCTGGGGTAATCCCGGAAGAGGTTGTCGAGTCATTTTTTGCTGCCTGCAGGGGTGATAACTTTGATTTGGCAAACAAGGAAGTCAACAATGTAATCGCAGAGGGATATCCAGTCTCTCAGATGCTTTCACAGTTATTTGAGGTGGTGGTTGAATCAGATGACATATCAGATGAACAGAAGGCTAGAATATGCAAAAAAATGGGTGAAGCAGATAAGCGTCTCGTTGACGGTGCTGACGAGTACTTGCAGCTGCTTGATGTTGCCAGCAGTGTAATGCGAGCTATGTGTAACATGCCCGAAGATTTCTCTTAG

Protein Analysis

340

Amino Acids

37.78

Weight (kDa)

5.18

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012087)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 155
AccII CGCG 2 cut(s) 546, 664
AciI CCGC 3 cut(s) 128, 371, 544
AclWI GGATC 4 cut(s) 266, 479, 578, 682
AcoI YGGCCR 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 623
AfaI GTAC 2 cut(s) 412, 950
AfiI CCNNNNNNNGG 3 cut(s) 158, 367, 727
AgsI TTSAA 3 cut(s) 378, 492, 860
AluBI AGCT 7 cut(s) 21, 196, 235, 659, 697, 958, 989
AluI AGCT 7 cut(s) 21, 196, 235, 659, 697, 958, 989
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 4 cut(s) 107, 712, 826, 932
AlwI GGATC 4 cut(s) 266, 479, 578, 682
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 2 cut(s) 47, 571
ApeKI GCWGC 5 cut(s) 293, 659, 749, 955, 958
AspLEI GCGC 3 cut(s) 7, 664, 666
AspS9I GGNCC 3 cut(s) 94, 146, 203
AsuC2I CCSGG 2 cut(s) 153, 722
AsuHPI GGTGA 4 cut(s) 91, 635, 773, 923
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 3 cut(s) 94, 146, 203
BaeGI GKGCMC 1 cut(s) 158
BanI GGYRCC 2 cut(s) 4, 155
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 5 cut(s) 280, 646, 736, 945, 967
BclI TGATCA 1 cut(s) 537
BcnI CCSGG 2 cut(s) 153, 722
BcoDI GTCTC 4 cut(s) 107, 712, 826, 932
BfaI CTAG 4 cut(s) 222, 362, 581, 891
BfmI CTRYAG 1 cut(s) 754
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 6 cut(s) 294, 544, 660, 750, 956, 959
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 6 cut(s) 295, 545, 661, 751, 957, 960
BmcAI AGTACT 1 cut(s) 950
Bme1390I CCNGG 2 cut(s) 153, 722
Bme18I GGWCC 3 cut(s) 94, 146, 203
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 94, 146, 203
BmiI GGNNCC 3 cut(s) 6, 95, 157
BmrFI CCNGG 2 cut(s) 153, 722
BmsI GCATC 2 cut(s) 379, 819
Bpu1102I GCTNAGC 1 cut(s) 72
BpuMI CCSGG 2 cut(s) 153, 722
BsaBI GATNNNNATC 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 367, 727
Bse1I ACTGG 2 cut(s) 15, 818
Bse3DI GCAATG 1 cut(s) 183
Bse8I GATNNNNATC 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 29
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 3 cut(s) 158, 367, 727
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 3 cut(s) 86, 407, 839
BseNI ACTGG 2 cut(s) 15, 818
BsePI GCGCGC 1 cut(s) 662
BseSI GKGCMC 1 cut(s) 158
BseX3I CGGCCG 1 cut(s) 47
BseXI GCAGC 5 cut(s) 280, 646, 736, 945, 967
Bsh1236I CGCG 2 cut(s) 546, 664
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 49, 573
BshNI GGYRCC 2 cut(s) 4, 155
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 3 cut(s) 152, 159, 722
BslI CCNNNNNNNGG 3 cut(s) 158, 367, 727
BsmAI GTCTC 4 cut(s) 107, 712, 826, 932
BsmBI CGTCTC 1 cut(s) 932
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 2 cut(s) 49, 573
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 158, 237
Bsp143I GATC 9 cut(s) 250, 258, 279, 351, 471, 537, 583, 625, 674
Bsp1720I GCTNAGC 1 cut(s) 72
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 3 cut(s) 128, 371, 544
BspANI GGCC 2 cut(s) 49, 573
BspCNI CTCAG 3 cut(s) 85, 406, 838
BspFNI CGCG 2 cut(s) 546, 664
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 3 cut(s) 6, 95, 157
BspMAI CTGCAG 1 cut(s) 758
BspPI GGATC 4 cut(s) 266, 479, 578, 682
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 2 cut(s) 4, 155
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 2 cut(s) 15, 818
BssECI CCNNGG 1 cut(s) 29
BssHII GCGCGC 1 cut(s) 662
BssMI GATC 9 cut(s) 250, 258, 279, 351, 471, 537, 583, 625, 674
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 29
Bst4CI ACNGT 3 cut(s) 146, 840, 938
Bst6I CTCTTC 2 cut(s) 143, 720
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 4 cut(s) 664, 754, 973, 987
BstDEI CTNAG 7 cut(s) 72, 393, 404, 605, 687, 825, 1017
BstDSI CCRYGG 1 cut(s) 29
BstENI CCTNNNNNAGG 1 cut(s) 365
BstFNI CGCG 2 cut(s) 546, 664
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 664, 666
BstKTI GATC 9 cut(s) 253, 261, 282, 354, 474, 540, 586, 628, 677
BstMAI GTCTC 4 cut(s) 107, 712, 826, 932
BstMBI GATC 9 cut(s) 250, 258, 279, 351, 471, 537, 583, 625, 674
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 3 cut(s) 13, 299, 398
BstNSI RCATGY 2 cut(s) 136, 1003
BstSCI CCNGG 2 cut(s) 151, 720
BstSFI CTRYAG 1 cut(s) 754
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 2 cut(s) 546, 664
BstV1I GCAGC 5 cut(s) 280, 646, 736, 945, 967
BstX2I RGATCY 2 cut(s) 583, 674
BstYI RGATCY 2 cut(s) 583, 674
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 2 cut(s) 49, 573
BtgI CCRYGG 1 cut(s) 29
BtsI GCAGTG 2 cut(s) 171, 982
BtsIMutI CAGTG 3 cut(s) 8, 171, 982
Cac8I GCNNGC 4 cut(s) 664, 754, 973, 987
CciI TCATGA 1 cut(s) 534
CfoI GCGC 3 cut(s) 7, 664, 666
Cfr13I GGNCC 3 cut(s) 94, 146, 203
CseI GACGC 1 cut(s) 914
Csp6I GTAC 2 cut(s) 411, 949
CviAII CATG 4 cut(s) 30, 133, 535, 1000
CviQI GTAC 2 cut(s) 411, 949
DdeI CTNAG 7 cut(s) 72, 393, 404, 605, 687, 825, 1017
DinI GGCGCC 1 cut(s) 6
DpnI GATC 9 cut(s) 252, 260, 281, 353, 473, 539, 585, 627, 676
DpnII GATC 9 cut(s) 250, 258, 279, 351, 471, 537, 583, 625, 674
DraIII CACNNNGTG 1 cut(s) 623
EaeI YGGCCR 1 cut(s) 47
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 143, 720
EarI CTCTTC 2 cut(s) 143, 720
EciI GGCGGA 1 cut(s) 386
Ecl136II GAGCTC 1 cut(s) 235
EclXI CGGCCG 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 29
Eco147I AGGCCT 1 cut(s) 573
Eco24I GRGCYC 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 107
Eco32I GATATC 1 cut(s) 815
Eco47I GGWCC 3 cut(s) 94, 146, 203
Eco52I CGGCCG 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 235
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 94
EcoRV GATATC 1 cut(s) 815
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 237
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 29
Esp3I CGTCTC 1 cut(s) 932
FaeI CATG 4 cut(s) 33, 136, 538, 1003
FalI AAGNNNNNCTT 2 cut(s) 612, 644
FatI CATG 4 cut(s) 29, 132, 534, 999
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 6 cut(s) 294, 544, 660, 750, 956, 959
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 6 cut(s) 294, 544, 660, 750, 956, 959
FspBI CTAG 4 cut(s) 222, 362, 581, 891
GlaI GCGC 3 cut(s) 6, 663, 665
GluI GCNGC 6 cut(s) 294, 544, 660, 750, 956, 959
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 49, 573
HapII CCGG 3 cut(s) 152, 159, 722
HgaI GACGC 1 cut(s) 914
HhaI GCGC 3 cut(s) 7, 664, 666
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 33, 136, 538, 1003
Hin6I GCGC 3 cut(s) 5, 662, 664
HinP1I GCGC 3 cut(s) 5, 662, 664
HincII GTYRAC 3 cut(s) 600, 793, 934
HindII GTYRAC 3 cut(s) 600, 793, 934
HinfI GANTC 4 cut(s) 374, 441, 737, 860
HpaII CCGG 3 cut(s) 152, 159, 722
HphI GGTGA 4 cut(s) 91, 635, 773, 923
Hpy166II GTNNAC 5 cut(s) 149, 341, 600, 793, 934
Hpy188I TCNGA 7 cut(s) 203, 273, 396, 526, 828, 865, 877
Hpy188III TCNNGA 5 cut(s) 112, 222, 492, 535, 587
Hpy8I GTNNAC 5 cut(s) 149, 341, 600, 793, 934
Hpy99I CGWCG 1 cut(s) 636
HpyAV CCTTC 3 cut(s) 563, 685, 880
HpyCH4III ACNGT 3 cut(s) 146, 840, 938
HpyCH4IV ACGT 2 cut(s) 319, 409
HpyCH4V TGCA 8 cut(s) 16, 242, 500, 553, 652, 756, 900, 955
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 299, 398
HpyF3I CTNAG 7 cut(s) 72, 393, 404, 605, 687, 825, 1017
HpySE526I ACGT 2 cut(s) 319, 409
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 33, 136, 538, 1003
HspAI GCGC 3 cut(s) 5, 662, 664
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 9 cut(s) 250, 258, 279, 351, 471, 537, 583, 625, 674
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 232, 694
Lsp1109I GCAGC 5 cut(s) 280, 646, 736, 945, 967
LweI GCATC 2 cut(s) 379, 819
MaeI CTAG 4 cut(s) 222, 362, 581, 891
MaeII ACGT 2 cut(s) 319, 409
MaeIII GTNAC 2 cut(s) 433, 995
MalI GATC 9 cut(s) 252, 260, 281, 353, 473, 539, 585, 627, 676
MboI GATC 9 cut(s) 250, 258, 279, 351, 471, 537, 583, 625, 674
MboII GAAGA 8 cut(s) 130, 398, 539, 578, 620, 669, 737, 1019
MflI RGATCY 2 cut(s) 583, 674
MhlI GDGCHC 2 cut(s) 158, 237
MluCI AATT 2 cut(s) 121, 457
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 746
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 9 cut(s) 76, 107, 119, 127, 361, 584, 721, 802, 841
MseI TTAA 2 cut(s) 348, 513
MspA1I CMGCKG 2 cut(s) 659, 958
MspI CCGG 3 cut(s) 152, 159, 722
MspR9I CCNGG 2 cut(s) 153, 722
Mva1269I GAATGC 1 cut(s) 403
MvnI CGCG 2 cut(s) 546, 664
MwoI GCNNNNNNNGC 3 cut(s) 13, 299, 398
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 153, 722
NcoI CCATGG 1 cut(s) 29
NdeII GATC 9 cut(s) 250, 258, 279, 351, 471, 537, 583, 625, 674
NlaIII CATG 4 cut(s) 33, 136, 538, 1003
NlaIV GGNNCC 3 cut(s) 6, 95, 157
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 2 cut(s) 136, 1003
PaeR7I CTCGAG 1 cut(s) 110
PagI TCATGA 1 cut(s) 534
PauI GCGCGC 1 cut(s) 662
PceI AGGCCT 1 cut(s) 573
PciSI GCTCTTC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 1 cut(s) 942
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 3 cut(s) 374, 441, 860
PfoI TCCNGGA 1 cut(s) 720
PkrI GCNGC 6 cut(s) 295, 545, 661, 751, 957, 960
PleI GAGTC 1 cut(s) 745
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 745
PpuMI RGGWCCY 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 94
PspN4I GGNNCC 3 cut(s) 6, 95, 157
PspPI GGNCC 3 cut(s) 94, 146, 203
PspPPI RGGWCCY 1 cut(s) 94
PstI CTGCAG 1 cut(s) 758
PsuI RGATCY 2 cut(s) 583, 674
PteI GCGCGC 1 cut(s) 662
PvuII CAGCTG 2 cut(s) 659, 958
RsaI GTAC 2 cut(s) 412, 950
RsaNI GTAC 2 cut(s) 411, 949
SacI GAGCTC 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 348, 513
SatI GCNGC 6 cut(s) 294, 544, 660, 750, 956, 959
Sau3AI GATC 9 cut(s) 250, 258, 279, 351, 471, 537, 583, 625, 674
Sau96I GGNCC 3 cut(s) 94, 146, 203
SbfI CCTGCAGG 1 cut(s) 758
ScaI AGTACT 1 cut(s) 950
SchI GAGTC 1 cut(s) 746
ScrFI CCNGG 2 cut(s) 153, 722
SdaI CCTGCAGG 1 cut(s) 758
SduI GDGCHC 2 cut(s) 158, 237
SfaNI GCATC 2 cut(s) 379, 819
SfcI CTRYAG 1 cut(s) 754
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 3 cut(s) 94, 146, 203
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse8387I CCTGCAGG 1 cut(s) 758
Sse9I AATT 2 cut(s) 121, 457
SseBI AGGCCT 1 cut(s) 573
SsiI CCGC 3 cut(s) 128, 371, 544
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 4 cut(s) 222, 362, 581, 891
SstI GAGCTC 1 cut(s) 237
StuI AGGCCT 1 cut(s) 573
StyD4I CCNGG 2 cut(s) 151, 720
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 146, 840, 938
TaiI ACGT 2 cut(s) 322, 412
TaqI TCGA 3 cut(s) 36, 111, 735
TasI AATT 2 cut(s) 121, 457
TatI WGTACW 1 cut(s) 948
TauI GCSGC 1 cut(s) 546
TfiI GAWTC 3 cut(s) 374, 441, 860
Tru1I TTAA 2 cut(s) 348, 513
Tru9I TTAA 2 cut(s) 348, 513
TscAI CASTG 3 cut(s) 15, 178, 982
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 5 cut(s) 293, 659, 749, 955, 958
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 1 cut(s) 894
TspRI CASTG 3 cut(s) 15, 178, 982
VpaK11BI GGWCC 3 cut(s) 94, 146, 203
XagI CCTNNNNNAGG 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 221
XceI RCATGY 2 cut(s) 136, 1003
XhoI CTCGAG 1 cut(s) 110
XspI CTAG 4 cut(s) 222, 362, 581, 891
ZrmI AGTACT 1 cut(s) 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.