Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012491

Physical Location & Seq

Genomic Coordinates Forward (+)

7651882 .. 7654014

Gene Structure 2133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGGGACACGAAGGTAGAGACAATCTCGAGGTTAGCTCAATGGAGAATTGAAAATTTTGGTCCTTGTTCTTTCAAAAAGTCCGATCCTTTCAAAGTCGGAATTTGGAATTGGCATCTGTCTATAGAGAGGAATCGCTATCTATCAGTGAGGCTATTCCCAGAACTTTCTCGAGTATCTAAAGAGCAACCTCCTGTTGCCAAATTTGTTCTTCGTGTCTCCAACGTTGGCCCCAATCGTAGATTCTACATCTCTCCTGTTTATGAGAAGCTGCTGCGTACAACTGATGATTGTGTGTGGCATGTTGACTCCAGTTTCCACGGTCGATTCACCATTGATGTTGAGTTTCTTGATCTCAAAATCTGCCCTGTGAATGGTGGTGAAGCTTCTCCTGTTTGGCCAACCGATGCAACAATGCAATCAATCTCTACTCAAACCACTCTCAAATGCTTATCCCGGATGCTAGAGGAAAGCATACTAACCGATGTAATCATCCACACAGCCGATGGAACACTCTCTGCTCACAAAGCTATCCTCTCAGCTAGCTCAACTGTTTTCAAAAGCATGTTCCACCACGACCTCATGGAAAAGGAATCATCCACAATCCACATAGACGACATGTCGAGAGAATCTTGCATGGCTCTACTAAGTTACCTCTACGGAAACATAACCCAAGAAGAGTTCTGGAAACACAGGCTCGCCCTCCTCGGCGCTGCAAACAAGTACGACATAACGGATTTGAAAGCAGCCTGCGAGGAGAGCCTAATGGAAGATATAAACTCGAGTAATGTGCTCGAGAGGCTACAAGAAGCTTGGCTTTATCAGCTGGAGAAACTGAAGAAAGGGTGTTTGATGTATTTGTTTGATTTCGGAAAGATTTATGATGTCAGAGAAGAAATCAGCAGTTTCTTCAGGCAAGCTGATCGAGAACTGATGCTGGAGATGTTTCAAGAGGTTTTGTCTGTGTGGAAACCGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031463 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

326

Amino Acids

37.68

Weight (kDa)

5.78

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	153 - 256	1.4e-21	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21780 AT1G21780
fragaria_vesca	FvH4_2g27041 FvH4_2g27041 FvH4_2g27041
malus_domestica	MD08G1162000.v1.1
prunus_persica	Prupe.1G495000_v2.0.a1 Prupe.1G495100_v2.0.a1
pyrus_communis	pycom08g14000
rosa_chinensis	RchiOBHm_Chr6g0295921
rosa_laevigata	RLG00000011756
rosa_multiflora	Rmu_sc0003139.1_g000009
rosa_roxburghii	Rroxscaffold_7G00172050
rosa_rugosa	Rorug06G0255100
rosa_samantha	Rh6AG368900 Rh6BG376600 Rh6CG382800 Rh6DG369400
rosa_wichuraiana	Rw6G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	225
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	398
AcsI	RAATTY	3 cut(s)	55, 102, 203
AcuI	CTGAAG	2 cut(s)	857, 895
AfaI	GTAC	2 cut(s)	280, 725
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	618
AgeI	ACCGGT	1 cut(s)	973
AgsI	TTSAA	6 cut(s)	53, 76, 94, 559, 742, 950
AhdI	GACNNNNNGTC	1 cut(s)	619
AjuI	GAANNNNNNNTTGG	4 cut(s)	94, 126, 227, 259
AluBI	AGCT	9 cut(s)	38, 271, 386, 530, 542, 546, 812, 826, 920
AluI	AGCT	9 cut(s)	38, 271, 386, 530, 542, 546, 812, 826, 920
Alw21I	GWGCWC	1 cut(s)	795
Alw26I	GTCTC	2 cut(s)	14, 223
AlwI	GGATC	1 cut(s)	80
Ama87I	CYCGRG	4 cut(s)	28, 171, 781, 794
AoxI	GGCC	2 cut(s)	229, 398
ApeKI	GCWGC	4 cut(s)	271, 274, 713, 746
ApoI	RAATTY	3 cut(s)	55, 102, 203
AsiGI	ACCGGT	1 cut(s)	973
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	2 cut(s)	62, 230
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	2 cut(s)	322, 392
AsuNHI	GCTAGC	1 cut(s)	542
AvaI	CYCGRG	4 cut(s)	28, 171, 781, 794
AvaII	GGWCC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	795
BbvI	GCAGC	4 cut(s)	258, 261, 700, 758
BccI	CCATC	1 cut(s)	500
BcgI	CGANNNNNNTGC	4 cut(s)	772, 806, 905, 939
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	14, 223
BfaI	CTAG	2 cut(s)	464, 543
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	714
BisI	GCNGC	4 cut(s)	272, 275, 714, 747
BlsI	GCNGC	4 cut(s)	273, 276, 715, 748
Bme1390I	CCNGG	1 cut(s)	457
Bme18I	GGWCC	1 cut(s)	62
BmeRI	GACNNNNNGTC	1 cut(s)	619
BmeT110I	CYCGRG	4 cut(s)	28, 171, 781, 794
BmgT120I	GGNCC	2 cut(s)	62, 230
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	457
BmsI	GCATC	4 cut(s)	124, 397, 450, 924
BmtI	GCTAGC	1 cut(s)	546
BplI	GAGNNNNNCTC	4 cut(s)	11, 43, 22, 54
BpmI	CTGGAG	3 cut(s)	295, 848, 959
BpuMI	CCSGG	1 cut(s)	457
BsaJI	CCNNGG	2 cut(s)	319, 706
BsaWI	WCCGGW	1 cut(s)	973
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse118I	RCCGGY	1 cut(s)	973
Bse1I	ACTGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	319, 706
BseGI	GGATG	3 cut(s)	465, 492, 596
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	695, 770
BseXI	GCAGC	4 cut(s)	258, 261, 700, 758
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	2 cut(s)	231, 400
BshTI	ACCGGT	1 cut(s)	973
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	795
BsiHKCI	CYCGRG	4 cut(s)	28, 171, 781, 794
BsiSI	CCGG	2 cut(s)	457, 974
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	2 cut(s)	14, 223
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	231, 400
BsoBI	CYCGRG	4 cut(s)	28, 171, 781, 794
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	3 cut(s)	85, 352, 922
BspANI	GGCC	2 cut(s)	231, 400
BspCNI	CTCAG	1 cut(s)	551
BspLI	GGNNCC	1 cut(s)	232
BspOI	GCTAGC	1 cut(s)	546
BspPI	GGATC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	973
BsrI	ACTGG	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	973
BssECI	CCNNGG	2 cut(s)	319, 706
BssMI	GATC	3 cut(s)	85, 352, 922
Bst4CI	ACNGT	2 cut(s)	323, 553
Bst6I	CTCTTC	1 cut(s)	672
BstC8I	GCNNGC	4 cut(s)	544, 699, 751, 918
BstDEI	CTNAG	2 cut(s)	538, 647
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	3 cut(s)	465, 492, 596
BstH2I	RGCGCY	1 cut(s)	714
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	3 cut(s)	88, 355, 925
BstMAI	GTCTC	2 cut(s)	14, 223
BstMBI	GATC	3 cut(s)	85, 352, 922
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	4 cut(s)	527, 759, 799, 823
BstNSI	RCATGY	3 cut(s)	305, 568, 622
BstSCI	CCNGG	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	258, 261, 700, 758
BsuRI	GGCC	2 cut(s)	231, 400
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	3 cut(s)	465, 492, 596
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	4 cut(s)	544, 699, 751, 918
CfoI	GCGC	1 cut(s)	713
Cfr10I	RCCGGY	1 cut(s)	973
Cfr13I	GGNCC	2 cut(s)	62, 230
Csp6I	GTAC	2 cut(s)	279, 724
CspAI	ACCGGT	1 cut(s)	973
CviAII	CATG	5 cut(s)	302, 565, 583, 619, 637
CviQI	GTAC	2 cut(s)	279, 724
DdeI	CTNAG	2 cut(s)	538, 647
DpnI	GATC	3 cut(s)	87, 354, 924
DpnII	GATC	3 cut(s)	85, 352, 922
DriI	GACNNNNNGTC	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	672
Eam1105I	GACNNNNNGTC	1 cut(s)	619
EarI	CTCTTC	1 cut(s)	672
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	2 cut(s)	857, 895
Eco88I	CYCGRG	4 cut(s)	28, 171, 781, 794
FaeI	CATG	5 cut(s)	305, 568, 586, 622, 640
FalI	AAGNNNNNCTT	2 cut(s)	801, 833
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	5 cut(s)	301, 564, 582, 618, 636
Fnu4HI	GCNGC	4 cut(s)	272, 275, 714, 747
FokI	GGATG	3 cut(s)	472, 479, 583
Fsp4HI	GCNGC	4 cut(s)	272, 275, 714, 747
FspBI	CTAG	2 cut(s)	464, 543
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	4 cut(s)	272, 275, 714, 747
GsuI	CTGGAG	3 cut(s)	295, 848, 959
HaeII	RGCGCY	1 cut(s)	714
HaeIII	GGCC	2 cut(s)	231, 400
HapII	CCGG	2 cut(s)	457, 974
HhaI	GCGC	1 cut(s)	713
Hin1II	CATG	5 cut(s)	305, 568, 586, 622, 640
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	2 cut(s)	384, 810
HinfI	GANTC	6 cut(s)	133, 243, 308, 327, 593, 629
HpaII	CCGG	2 cut(s)	457, 974
HphI	GGTGA	2 cut(s)	322, 392
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	4 cut(s)	85, 101, 872, 890
Hpy188III	TCNNGA	8 cut(s)	28, 171, 350, 624, 685, 796, 926, 950
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	2 cut(s)	323, 553
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	4 cut(s)	410, 418, 636, 716
HpyF10VI	GCNNNNNNNGC	4 cut(s)	527, 759, 799, 823
HpyF3I	CTNAG	2 cut(s)	538, 647
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	5 cut(s)	305, 568, 586, 622, 640
HspAI	GCGC	1 cut(s)	711
Kzo9I	GATC	3 cut(s)	85, 352, 922
Lsp1109I	GCAGC	4 cut(s)	258, 261, 700, 758
LweI	GCATC	4 cut(s)	124, 397, 450, 924
MaeI	CTAG	2 cut(s)	464, 543
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	3 cut(s)	87, 354, 924
MboI	GATC	3 cut(s)	85, 352, 922
MboII	GAAGA	6 cut(s)	203, 689, 782, 850, 901, 905
MhlI	GDGCHC	1 cut(s)	795
MlsI	TGGCCA	1 cut(s)	400
MluCI	AATT	5 cut(s)	48, 55, 102, 109, 203
MluNI	TGGCCA	1 cut(s)	400
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	79, 246
Mox20I	TGGCCA	1 cut(s)	400
MscI	TGGCCA	1 cut(s)	400
Msp20I	TGGCCA	1 cut(s)	400
MspA1I	CMGCKG	1 cut(s)	826
MspI	CCGG	2 cut(s)	457, 974
MspR9I	CCNGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	4 cut(s)	527, 759, 799, 823
NciI	CCSGG	1 cut(s)	457
NdeII	GATC	3 cut(s)	85, 352, 922
NheI	GCTAGC	1 cut(s)	542
NlaIII	CATG	5 cut(s)	305, 568, 586, 622, 640
NlaIV	GGNNCC	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	687
NspI	RCATGY	3 cut(s)	305, 568, 622
PaeR7I	CTCGAG	4 cut(s)	28, 171, 781, 794
PciI	ACATGT	1 cut(s)	618
PfeI	GAWTC	5 cut(s)	133, 243, 327, 593, 629
PfoI	TCCNGGA	1 cut(s)	455
PinAI	ACCGGT	1 cut(s)	973
PkrI	GCNGC	4 cut(s)	273, 276, 715, 748
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PscI	ACATGT	1 cut(s)	618
Psp1406I	AACGTT	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	62, 230
PspXI	VCTCGAGB	1 cut(s)	781
PvuII	CAGCTG	1 cut(s)	826
RsaI	GTAC	2 cut(s)	280, 725
RsaNI	GTAC	2 cut(s)	279, 724
SatI	GCNGC	4 cut(s)	272, 275, 714, 747
Sau3AI	GATC	3 cut(s)	85, 352, 922
Sau96I	GGNCC	2 cut(s)	62, 230
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	1 cut(s)	795
SfaNI	GCATC	4 cut(s)	124, 397, 450, 924
SfcI	CTRYAG	1 cut(s)	123
Sfr274I	CTCGAG	4 cut(s)	28, 171, 781, 794
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	4 cut(s)	28, 171, 781, 794
SmlI	CTYRAG	4 cut(s)	28, 171, 781, 794
SmoI	CTYRAG	4 cut(s)	28, 171, 781, 794
Sse9I	AATT	5 cut(s)	48, 55, 102, 109, 203
SspMI	CTAG	2 cut(s)	464, 543
StyD4I	CCNGG	1 cut(s)	455
TaaI	ACNGT	2 cut(s)	323, 553
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	7 cut(s)	29, 172, 325, 623, 782, 795, 925
TasI	AATT	5 cut(s)	48, 55, 102, 109, 203
TfiI	GAWTC	5 cut(s)	133, 243, 327, 593, 629
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	4 cut(s)	271, 274, 713, 746
TspGWI	ACGGA	2 cut(s)	675, 749
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	3 cut(s)	55, 102, 203
XceI	RCATGY	3 cut(s)	305, 568, 622
XcmI	CCANNNNNNNNNTGG	1 cut(s)	503
XhoI	CTCGAG	4 cut(s)	28, 171, 781, 794
XspI	CTAG	2 cut(s)	464, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.