Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012491

Physical Location & Seq

Genomic Coordinates Reverse (-)

21580948 .. 21583405

Gene Structure 2458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27041.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCTTTCAAGGCACTTTTCGATAGAGAAGAATCGGTATCTGTATATTCGTTTGTTTCCGGAACAATCGCGTTTGACTAAAGAACAGCCTCCTTTTGCTCGCTTTGTGCTTCGAATTACGAGCTCCGCCTTTGGCCGCCAGCCTTGCGTCTCCCCCGTTTATGAAAGACTGCTTCGCACACCGGAGGACTTTGCCTGGCCTGTTAATTCCAGTTCCAGTGGTCCCTTCGTCATTGAATTAGAGTTTCTCGACCTGAAGATATCAACTATGAATGGTGGGGAGTCTACTCATGTATGGCCTACTGGTGGATTGATGCAGTCTTTGTCAACTCAAAGCACTCTGACATGCCTCTCTCGAATGTTTCAAGAGGGTATCCATGCCGATGTCACCATCAACACTGCGGAAGGCTCTTTGAAAGCTCACAAAGCAGTTCTTTCAGCAAATTCTCCCGTGTTCCGGAGCATGTTCAGTCACGACCTTAAAGAAACAGTGTCCTCCACAATTGACATAGAAGACATGTCACTGGAATCTTGTACGGCCCTTGTCAGTTATTGGTATGGAACCATTAAACAAGAGGATTTCTTGAAGCACCGGTTGGCACTTCTCAGCGCGGCAAACAAATATGACATGTCAGACCTTAAAGATGCTTGTGAGGAGAGCCTTATGGAAGATATTAACTCTGGGAATGTCCTGGAGAGGCTGCACGAGGCCGGATTGTACCAACTGCCGAAGCTGAAGAAAGGGTGTTTGTTGTACTTGTTTCGTTTTGGCAAGATATATGATGTTAGACAGGAGTTAGATGGCTTTTTCGAGTATGCAGACAGAGAGTTGATGACCGAAATGTTTCAAGAAGTCCTTACAAGTTGGAAGCCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031463 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

293

Amino Acids

33.35

Weight (kDa)

5.58

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	158 - 262	1.6e-21	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21780 AT1G21780
fragaria_vesca	FvH4_2g27041 FvH4_2g27041 FvH4_2g27041
malus_domestica	MD08G1162000.v1.1
prunus_persica	Prupe.1G495000_v2.0.a1 Prupe.1G495100_v2.0.a1
pyrus_communis	pycom08g14000
rosa_chinensis	RchiOBHm_Chr6g0295921
rosa_laevigata	RLG00000011756
rosa_multiflora	Rmu_sc0003139.1_g000009
rosa_roxburghii	Rroxscaffold_7G00172050
rosa_rugosa	Rorug06G0255100
rosa_samantha	Rh6AG368900 Rh6BG376600 Rh6CG382800 Rh6DG369400
rosa_wichuraiana	Rw6G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	284
AccII	CGCG	2 cut(s)	70, 611
AccIII	TCCGGA	2 cut(s)	58, 456
AciI	CCGC	4 cut(s)	126, 136, 401, 611
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	2 cut(s)	275, 755
AfaI	GTAC	3 cut(s)	535, 719, 755
AfiI	CCNNNNNNNGG	2 cut(s)	305, 456
AflIII	ACRYGT	2 cut(s)	516, 627
AgeI	ACCGGT	1 cut(s)	591
AgsI	TTSAA	6 cut(s)	9, 236, 365, 415, 586, 848
AjnI	CCWGG	2 cut(s)	194, 690
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AluBI	AGCT	3 cut(s)	123, 419, 733
AluI	AGCT	3 cut(s)	123, 419, 733
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	154
Aor13HI	TCCGGA	2 cut(s)	58, 456
AoxI	GGCC	5 cut(s)	133, 197, 296, 537, 708
ApeKI	GCWGC	1 cut(s)	700
ApoI	RAATTY	1 cut(s)	442
AsiGI	ACCGGT	1 cut(s)	591
Asp700I	GAANNNNTTC	1 cut(s)	843
AspLEI	GCGC	1 cut(s)	611
AspS9I	GGNCC	2 cut(s)	221, 538
AsuHPI	GGTGA	1 cut(s)	379
AsuII	TTCGAA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	125
BauI	CACGAG	1 cut(s)	704
BbsI	GAAGAC	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	687
BccI	CCATC	2 cut(s)	398, 794
BceAI	ACGGC	1 cut(s)	552
BciT130I	CCWGG	2 cut(s)	196, 692
BciVI	GTATCC	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	154
BfuI	GTATCC	1 cut(s)	383
BisI	GCNGC	3 cut(s)	136, 612, 701
BlsI	GCNGC	3 cut(s)	137, 613, 702
Bme1390I	CCNGG	2 cut(s)	196, 692
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	221, 538
BmiI	GGNNCC	2 cut(s)	223, 562
BmrFI	CCNGG	2 cut(s)	196, 692
BmsI	GCATC	2 cut(s)	303, 634
BpiI	GAAGAC	1 cut(s)	519
BpmI	CTGGAG	1 cut(s)	713
Bpu14I	TTCGAA	1 cut(s)	112
BsaWI	WCCGGW	4 cut(s)	58, 181, 456, 591
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 456
Bse118I	RCCGGY	1 cut(s)	591
Bse1I	ACTGG	4 cut(s)	210, 216, 307, 528
BseAI	TCCGGA	2 cut(s)	58, 456
BseBI	CCWGG	2 cut(s)	196, 692
BseLI	CCNNNNNNNGG	2 cut(s)	305, 456
BseMII	CTCAG	1 cut(s)	619
BseNI	ACTGG	4 cut(s)	210, 216, 307, 528
BseRI	GAGGAG	1 cut(s)	668
BseXI	GCAGC	1 cut(s)	687
BsgI	GTGCAG	1 cut(s)	686
Bsh1236I	CGCG	2 cut(s)	70, 611
BshFI	GGCC	5 cut(s)	135, 199, 298, 539, 710
BshTI	ACCGGT	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	5 cut(s)	59, 182, 457, 592, 711
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	305, 456
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	5 cut(s)	135, 199, 298, 539, 710
Bsp119I	TTCGAA	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp13I	TCCGGA	2 cut(s)	58, 456
BspACI	CCGC	4 cut(s)	126, 136, 401, 611
BspANI	GGCC	5 cut(s)	135, 199, 298, 539, 710
BspCNI	CTCAG	1 cut(s)	618
BspEI	TCCGGA	2 cut(s)	58, 456
BspFNI	CGCG	2 cut(s)	70, 611
BspLI	GGNNCC	2 cut(s)	223, 562
BspT104I	TTCGAA	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	591
BsrI	ACTGG	4 cut(s)	210, 216, 307, 528
BssAI	RCCGGY	1 cut(s)	591
BssSI	CACGAG	1 cut(s)	704
Bst2BI	CACGAG	1 cut(s)	704
Bst2UI	CCWGG	2 cut(s)	196, 692
Bst4CI	ACNGT	1 cut(s)	490
BstBI	TTCGAA	1 cut(s)	112
BstC8I	GCNNGC	3 cut(s)	100, 140, 873
BstDEI	CTNAG	1 cut(s)	605
BstFNI	CGCG	2 cut(s)	70, 611
BstHHI	GCGC	1 cut(s)	611
BstMAI	GTCTC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 144, 425
BstNI	CCWGG	2 cut(s)	196, 692
BstNSI	RCATGY	4 cut(s)	348, 466, 520, 631
BstSCI	CCNGG	2 cut(s)	194, 690
BstUI	CGCG	2 cut(s)	70, 611
BstV1I	GCAGC	1 cut(s)	687
BstV2I	GAAGAC	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	5 cut(s)	135, 199, 298, 539, 710
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	4 cut(s)	223, 396, 495, 521
Cac8I	GCNNGC	3 cut(s)	100, 140, 873
CfoI	GCGC	1 cut(s)	611
Cfr10I	RCCGGY	1 cut(s)	591
Cfr13I	GGNCC	2 cut(s)	221, 538
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	534, 718, 754
CspAI	ACCGGT	1 cut(s)	591
CviAII	CATG	6 cut(s)	290, 345, 377, 463, 517, 628
CviQI	GTAC	3 cut(s)	534, 718, 754
DdeI	CTNAG	1 cut(s)	605
EaeI	YGGCCR	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	123
Eco57I	CTGAAG	2 cut(s)	275, 755
EcoICRI	GAGCTC	1 cut(s)	123
EcoRII	CCWGG	2 cut(s)	194, 690
EcoRV	GATATC	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	125
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	6 cut(s)	293, 348, 380, 466, 520, 631
FalI	AAGNNNNNCTT	4 cut(s)	417, 449, 840, 872
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	6 cut(s)	289, 344, 376, 462, 516, 627
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	3 cut(s)	136, 612, 701
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	3 cut(s)	136, 612, 701
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	3 cut(s)	136, 612, 701
GsuI	CTGGAG	1 cut(s)	713
HaeIII	GGCC	5 cut(s)	135, 199, 298, 539, 710
HapII	CCGG	5 cut(s)	59, 182, 457, 592, 711
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	611
Hin1II	CATG	6 cut(s)	293, 348, 380, 466, 520, 631
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	3 cut(s)	31, 281, 527
HpaII	CCGG	5 cut(s)	59, 182, 457, 592, 711
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	2 cut(s)	285, 327
Hpy188I	TCNGA	2 cut(s)	342, 634
Hpy188III	TCNNGA	8 cut(s)	59, 248, 354, 365, 457, 473, 583, 848
Hpy8I	GTNNAC	2 cut(s)	285, 327
HpyAV	CCTTC	2 cut(s)	235, 398
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4V	TGCA	4 cut(s)	316, 703, 818, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 144, 425
HpyF3I	CTNAG	1 cut(s)	605
Hsp92II	CATG	6 cut(s)	293, 348, 380, 466, 520, 631
HspAI	GCGC	1 cut(s)	609
Kpn2I	TCCGGA	2 cut(s)	58, 456
LmnI	GCTCC	2 cut(s)	128, 459
Lsp1109I	GCAGC	1 cut(s)	687
LweI	GCATC	2 cut(s)	303, 634
MaeIII	GTNAC	3 cut(s)	385, 470, 519
MboII	GAAGA	5 cut(s)	40, 268, 524, 680, 748
MfeI	CAATTG	1 cut(s)	501
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	5 cut(s)	114, 205, 236, 442, 501
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	845
MnlI	CCTC	9 cut(s)	99, 178, 359, 361, 505, 568, 646, 690, 700
MroI	TCCGGA	2 cut(s)	58, 456
MroXI	GAANNNNTTC	1 cut(s)	843
MseI	TTAA	5 cut(s)	204, 480, 567, 639, 675
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	5 cut(s)	59, 182, 457, 592, 711
MspR9I	CCNGG	2 cut(s)	196, 692
MunI	CAATTG	1 cut(s)	501
MvaI	CCWGG	2 cut(s)	196, 692
MvnI	CGCG	2 cut(s)	70, 611
MwoI	GCNNNNNNNGC	3 cut(s)	10, 144, 425
NlaIII	CATG	6 cut(s)	293, 348, 380, 466, 520, 631
NlaIV	GGNNCC	2 cut(s)	223, 562
NmuCI	GTSAC	3 cut(s)	385, 470, 519
NspI	RCATGY	4 cut(s)	348, 466, 520, 631
NspV	TTCGAA	1 cut(s)	112
PciI	ACATGT	2 cut(s)	516, 627
PdmI	GAANNNNTTC	1 cut(s)	843
PfeI	GAWTC	2 cut(s)	31, 527
PfoI	TCCNGGA	1 cut(s)	690
PinAI	ACCGGT	1 cut(s)	591
PkrI	GCNGC	3 cut(s)	137, 613, 702
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PscI	ACATGT	2 cut(s)	516, 627
Psp124BI	GAGCTC	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	194, 690
PspGI	CCWGG	2 cut(s)	194, 690
PspN4I	GGNNCC	2 cut(s)	223, 562
PspPI	GGNCC	2 cut(s)	221, 538
RsaI	GTAC	3 cut(s)	535, 719, 755
RsaNI	GTAC	3 cut(s)	534, 718, 754
RseI	CAYNNNNRTG	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	125
SaqAI	TTAA	5 cut(s)	204, 480, 567, 639, 675
SatI	GCNGC	3 cut(s)	136, 612, 701
Sau96I	GGNCC	2 cut(s)	221, 538
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	196, 692
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	6 cut(s)	125, 255, 421, 480, 639, 735
SfaNI	GCATC	2 cut(s)	303, 634
SfuI	TTCGAA	1 cut(s)	112
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	5 cut(s)	114, 205, 236, 442, 501
SsiI	CCGC	4 cut(s)	126, 136, 401, 611
SstI	GAGCTC	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	194, 690
TaaI	ACNGT	1 cut(s)	490
TaqI	TCGA	5 cut(s)	20, 112, 249, 355, 810
TaqII	GACCGA	1 cut(s)	851
TasI	AATT	5 cut(s)	114, 205, 236, 442, 501
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	2 cut(s)	138, 614
TfiI	GAWTC	2 cut(s)	31, 527
Tru1I	TTAA	5 cut(s)	204, 480, 567, 639, 675
Tru9I	TTAA	5 cut(s)	204, 480, 567, 639, 675
TscAI	CASTG	4 cut(s)	223, 403, 495, 528
TseFI	GTSAC	3 cut(s)	385, 470, 519
TseI	GCWGC	1 cut(s)	700
Tsp45I	GTSAC	3 cut(s)	385, 470, 519
TspDTI	ATGAA	2 cut(s)	177, 284
TspRI	CASTG	4 cut(s)	223, 403, 495, 528
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	442
XceI	RCATGY	4 cut(s)	348, 466, 520, 631
XmiI	GTMKAC	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.