Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012491

Physical Location & Seq

Genomic Coordinates Reverse (-)

56519332 .. 56522092

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG369400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGATGACTTTGCCTGGCCTGTTAATTCCAGCTTCAATGGTCCCTTCATCATTGATGTAGAGTTTCTTGACTTGAAGATATCCCCTATAAATGGTGGGCAGGCTACTCCTGTATGGCCTACTGGTGGATTGATGCAGTCTTTGTCAACCCAAAGCACTCTGAGATGCCTCTCTCGAATGCTTGATGAGGGCATCCATGCTGATGTCACCATCAGCACTGCTGAAGGATCTTTAAAAGCTCACAAAGCAATTCTTTCGGCAAATTCTCCTGTGTTCCAAAGCATGTTCAATCATAACCTTAAAGAAACAGTGTCCTCAACAATTGACATAGAAGACATGTCACTGGAGTCTTGCACGGCCCTTGTCAGTTATCTGTATGGAACCATTAAACAACAGGATTTCTGGAAGCACCGGTTGGCACTTCTAGGCGCGGCAAACAAATATGACATGTCAGACCTAAAAGATGCTTGTGAGGAGAGCCTTATGGAAGATATTAACTCCGGAAATGTCCTGGAGAGGCTGCAAGAGGCCGGGTTATACCAACTGCCCAAGCTGAAGAAAGGGTGTTTGCTGTACTTGTTTGGTTTTGGCAAGATATATGATGTTAGACATGAGATAGATACCTTTTTCAAGTATGCAGACAGAGAGTTGATGACCGAAATGTTTCAAGAAGTCCTTACAAGTTGGAAGCCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031463 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

232

Amino Acids

26.06

Weight (kDa)

4.86

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	59 - 162	1.1e-21	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21780 AT1G21780
fragaria_vesca	FvH4_2g27041 FvH4_2g27041 FvH4_2g27041
malus_domestica	MD08G1162000.v1.1
prunus_persica	Prupe.1G495000_v2.0.a1 Prupe.1G495100_v2.0.a1
pyrus_communis	pycom08g14000
rosa_chinensis	RchiOBHm_Chr6g0295921
rosa_laevigata	RLG00000011756
rosa_multiflora	Rmu_sc0003139.1_g000009
rosa_roxburghii	Rroxscaffold_7G00172050
rosa_rugosa	Rorug06G0255100
rosa_samantha	Rh6AG368900 Rh6BG376600 Rh6CG382800 Rh6DG369400
rosa_wichuraiana	Rw6G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	431
AccIII	TCCGGA	1 cut(s)	500
AciI	CCGC	1 cut(s)	431
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	2 cut(s)	243, 575
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	2 cut(s)	92, 125
AflIII	ACRYGT	2 cut(s)	336, 447
AgeI	ACCGGT	1 cut(s)	411
AgsI	TTSAA	5 cut(s)	37, 76, 289, 631, 668
AjnI	CCWGG	2 cut(s)	14, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	3 cut(s)	33, 239, 553
AluI	AGCT	3 cut(s)	33, 239, 553
AlwI	GGATC	1 cut(s)	235
Aor13HI	TCCGGA	1 cut(s)	500
AoxI	GGCC	4 cut(s)	17, 116, 357, 528
ApeKI	GCWGC	1 cut(s)	520
ApoI	RAATTY	1 cut(s)	262
AsiGI	ACCGGT	1 cut(s)	411
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	41, 358
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	507
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BciT130I	CCWGG	2 cut(s)	16, 512
BcnI	CCSGG	1 cut(s)	532
BfaI	CTAG	1 cut(s)	425
BisI	GCNGC	2 cut(s)	432, 521
BlsI	GCNGC	2 cut(s)	433, 522
Bme1390I	CCNGG	3 cut(s)	16, 512, 532
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	41, 358
BmiI	GGNNCC	2 cut(s)	43, 382
BmrFI	CCNGG	3 cut(s)	16, 512, 532
BmsI	GCATC	4 cut(s)	123, 155, 201, 454
BpiI	GAAGAC	1 cut(s)	339
BpmI	CTGGAG	2 cut(s)	365, 533
BpuMI	CCSGG	1 cut(s)	532
BsaWI	WCCGGW	2 cut(s)	411, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 125
Bse118I	RCCGGY	1 cut(s)	411
Bse1I	ACTGG	2 cut(s)	127, 348
BseAI	TCCGGA	1 cut(s)	500
BseBI	CCWGG	2 cut(s)	16, 512
BseGI	GGATG	2 cut(s)	10, 192
BseLI	CCNNNNNNNGG	2 cut(s)	92, 125
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	2 cut(s)	127, 348
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	4 cut(s)	19, 118, 359, 530
BshTI	ACCGGT	1 cut(s)	411
BsiSI	CCGG	3 cut(s)	412, 501, 531
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	92, 125
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	4 cut(s)	19, 118, 359, 530
Bsp13I	TCCGGA	1 cut(s)	500
Bsp143I	GATC	1 cut(s)	227
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	4 cut(s)	19, 118, 359, 530
BspCNI	CTCAG	1 cut(s)	153
BspEI	TCCGGA	1 cut(s)	500
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	43, 382
BspPI	GGATC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	127, 348
BssAI	RCCGGY	1 cut(s)	411
BssMI	GATC	1 cut(s)	227
Bst2UI	CCWGG	2 cut(s)	16, 512
Bst4CI	ACNGT	1 cut(s)	310
BstC8I	GCNNGC	2 cut(s)	102, 693
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	10, 192
BstFNI	CGCG	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	2 cut(s)	16, 512
BstNSI	RCATGY	3 cut(s)	286, 340, 451
BstSCI	CCNGG	3 cut(s)	14, 510, 530
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	507
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BsuRI	GGCC	4 cut(s)	19, 118, 359, 530
BtsCI	GGATG	2 cut(s)	10, 192
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	216, 315, 341
Cac8I	GCNNGC	2 cut(s)	102, 693
CfoI	GCGC	1 cut(s)	431
Cfr10I	RCCGGY	1 cut(s)	411
Cfr13I	GGNCC	2 cut(s)	41, 358
Csp6I	GTAC	1 cut(s)	574
CspAI	ACCGGT	1 cut(s)	411
CviAII	CATG	5 cut(s)	197, 283, 337, 448, 611
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
DraI	TTTAAA	1 cut(s)	234
Eco32I	GATATC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	243, 575
EcoRII	CCWGG	2 cut(s)	14, 510
EcoRV	GATATC	1 cut(s)	81
FaeI	CATG	5 cut(s)	200, 286, 340, 451, 614
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 660, 692
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	5 cut(s)	196, 282, 336, 447, 610
Fnu4HI	GCNGC	2 cut(s)	432, 521
FokI	GGATG	2 cut(s)	17, 179
Fsp4HI	GCNGC	2 cut(s)	432, 521
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	2 cut(s)	432, 521
GsuI	CTGGAG	2 cut(s)	365, 533
HaeIII	GGCC	4 cut(s)	19, 118, 359, 530
HapII	CCGG	3 cut(s)	412, 501, 531
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	5 cut(s)	200, 286, 340, 451, 614
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	3 cut(s)	412, 501, 531
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	162, 454
Hpy188III	TCNNGA	5 cut(s)	68, 174, 403, 501, 668
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	55, 218
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	5 cut(s)	136, 354, 523, 638, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	161
Hsp92II	CATG	5 cut(s)	200, 286, 340, 451, 614
HspAI	GCGC	1 cut(s)	429
Kpn2I	TCCGGA	1 cut(s)	500
Kzo9I	GATC	1 cut(s)	227
Lsp1109I	GCAGC	1 cut(s)	507
LweI	GCATC	4 cut(s)	123, 155, 201, 454
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	205, 339
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	4 cut(s)	88, 344, 500, 568
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	1 cut(s)	227
MluCI	AATT	4 cut(s)	25, 249, 262, 321
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	665
MnlI	CCTC	6 cut(s)	179, 181, 325, 466, 510, 520
MroI	TCCGGA	1 cut(s)	500
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	5 cut(s)	24, 233, 300, 387, 495
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	3 cut(s)	412, 501, 531
MspR9I	CCNGG	3 cut(s)	16, 512, 532
MunI	CAATTG	1 cut(s)	321
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	2 cut(s)	16, 512
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	532
NdeII	GATC	1 cut(s)	227
NlaIII	CATG	5 cut(s)	200, 286, 340, 451, 614
NlaIV	GGNNCC	2 cut(s)	43, 382
NmuCI	GTSAC	2 cut(s)	205, 339
NspI	RCATGY	3 cut(s)	286, 340, 451
PciI	ACATGT	2 cut(s)	336, 447
PctI	GAATGC	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	663
PfoI	TCCNGGA	1 cut(s)	510
PinAI	ACCGGT	1 cut(s)	411
PkrI	GCNGC	2 cut(s)	433, 522
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PscI	ACATGT	2 cut(s)	336, 447
Psp6I	CCWGG	2 cut(s)	14, 510
PspGI	CCWGG	2 cut(s)	14, 510
PspN4I	GGNNCC	2 cut(s)	43, 382
PspPI	GGNCC	2 cut(s)	41, 358
PsuI	RGATCY	1 cut(s)	227
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	5 cut(s)	24, 233, 300, 387, 495
SatI	GCNGC	2 cut(s)	432, 521
Sau3AI	GATC	1 cut(s)	227
Sau96I	GGNCC	2 cut(s)	41, 358
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	3 cut(s)	16, 512, 532
SetI	ASST	6 cut(s)	35, 241, 300, 459, 555, 626
SfaNI	GCATC	4 cut(s)	123, 155, 201, 454
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	4 cut(s)	25, 249, 262, 321
SsiI	CCGC	1 cut(s)	431
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	3 cut(s)	14, 510, 530
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	175
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	4 cut(s)	25, 249, 262, 321
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	1 cut(s)	434
Tru1I	TTAA	5 cut(s)	24, 233, 300, 387, 495
Tru9I	TTAA	5 cut(s)	24, 233, 300, 387, 495
TscAI	CASTG	3 cut(s)	223, 315, 348
TseFI	GTSAC	2 cut(s)	205, 339
TseI	GCWGC	1 cut(s)	520
Tsp45I	GTSAC	2 cut(s)	205, 339
TspDTI	ATGAA	1 cut(s)	37
TspRI	CASTG	3 cut(s)	223, 315, 348
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	3 cut(s)	286, 340, 451
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.