Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012491

Physical Location & Seq

Genomic Coordinates Forward (+)

19009231 .. 19012003

Gene Structure 2773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1162000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCCGATTCCAAAGTGGAGACAATCTCCCGATTAGCCCAATGGAGGATCGAGAACTTCGGACCTTGCTCTTACAAAAAGTCCGACCCTTTCCGGCTCGGAATCTGGAATTGGCATTTTTCGATAGAGAAGAATCGGTACCTCTACATTCGTCTGTTTCCAGAGCCGTCGCGGGTGTCGAAAGAACAGCCTCCCCTTGCTCGCTTTGTTCTCAGAGTCTCTAGCCCCGGCCCCGGCCCCGGCCGTAAGCCTTACATCTCTCCTGTTCATGAAAGACTGCTTCGTACAAGTGAAGACTTTGTCTGGCCTGTTGATTCCACCTTCCTTGGTCGCTTCATCATTGATGTTGAGTTTCTCGACTTGAAGATATGCCATTCAAATGGCGGGGAAGCTAGTCCTGTATGGCCTGCTGATGGATTGATGCAATCTGTGTCAACCCAAAGCACTCTCCGGTGCCTCTCTCGCATGCTTGATGAGGGCATCCATGCTGATGTTACTATCAACACTGCTGATGGCAGTTTAAGAGCTCACAAAGCAATTCTTTCTGCAACTTCTCCCGTGTTCCAAAGCATGTTCAGTCACGACCTTAAGGAAAAAGAGTCCTCCATAATCCACATAGTAGACATGTCCCTGGAATCTTGCATGGCACTTCTAAGTTACCTCTATGGAACCATTAAACAAGAAGATTTCTGGAAGCACCGGTTGGCACTTCTAGGGGCAGCAAACAAGTACGACATTGCAGACTTAAAAGATGCTTGTGAGGAAAGCCTTTTGGAAGATATTAACTCAACGAATGTCCTTGAGAGGCTGCAAGACGCCTGGTTGTACCAGCTGAATAAGCTTAAGAAAGGATGCTTGATGTACTTGTTTGATTTTGGAAAAATATATGACGTGAGAGAAGAAGTAAGTAACTTTTTCAGGCATGCAGACCGAGAATTGATGACGGAAATGTTTCAGGAGGTGCTTACTGTTTGGAAGCCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031463 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

329

Amino Acids

37.74

Weight (kDa)

6.02

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	155 - 259	1.5e-21	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21780 AT1G21780
fragaria_vesca	FvH4_2g27041 FvH4_2g27041 FvH4_2g27041
malus_domestica	MD08G1162000.v1.1
prunus_persica	Prupe.1G495000_v2.0.a1 Prupe.1G495100_v2.0.a1
pyrus_communis	pycom08g14000
rosa_chinensis	RchiOBHm_Chr6g0295921
rosa_laevigata	RLG00000011756
rosa_multiflora	Rmu_sc0003139.1_g000009
rosa_roxburghii	Rroxscaffold_7G00172050
rosa_rugosa	Rorug06G0255100
rosa_samantha	Rh6AG368900 Rh6BG376600 Rh6CG382800 Rh6DG369400
rosa_wichuraiana	Rw6G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	138
AccB1I	GGYRCC	2 cut(s)	138, 453
AccI	GTMKAC	1 cut(s)	621
AccII	CGCG	1 cut(s)	172
AciI	CCGC	2 cut(s)	172, 384
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	2 cut(s)	3, 241
AcyI	GRCGYC	1 cut(s)	816
AfaI	GTAC	5 cut(s)	140, 286, 731, 827, 863
AfiI	CCNNNNNNNGG	4 cut(s)	45, 233, 239, 413
AflII	CTTAAG	2 cut(s)	587, 842
AflIII	ACRYGT	1 cut(s)	624
AgeI	ACCGGT	1 cut(s)	699
AgsI	TTSAA	2 cut(s)	364, 378
AjiI	CACGTC	1 cut(s)	892
AjnI	CCWGG	2 cut(s)	630, 818
AjuI	GAANNNNNNNTTGG	4 cut(s)	94, 126, 686, 718
AluBI	AGCT	4 cut(s)	392, 527, 832, 841
AluI	AGCT	4 cut(s)	392, 527, 832, 841
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	2 cut(s)	14, 223
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	6 cut(s)	3, 229, 235, 241, 305, 404
ApeKI	GCWGC	2 cut(s)	719, 808
AsiGI	ACCGGT	1 cut(s)	699
Asp700I	GAANNNNTTC	1 cut(s)	951
Asp718I	GGTACC	1 cut(s)	138
AspS9I	GGNCC	3 cut(s)	62, 230, 236
AsuC2I	CCSGG	3 cut(s)	228, 234, 240
AvaII	GGWCC	1 cut(s)	62
BanI	GGYRCC	2 cut(s)	138, 453
BanII	GRGCYC	1 cut(s)	529
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	2 cut(s)	731, 795
BccI	CCATC	2 cut(s)	407, 506
BceAI	ACGGC	2 cut(s)	151, 228
BciT130I	CCWGG	2 cut(s)	632, 820
BcnI	CCSGG	3 cut(s)	228, 234, 240
BcoDI	GTCTC	2 cut(s)	14, 223
BfaI	CTAG	3 cut(s)	222, 393, 713
BfrI	CTTAAG	2 cut(s)	587, 842
BisI	GCNGC	2 cut(s)	720, 809
BlsI	GCNGC	2 cut(s)	721, 810
Bme1390I	CCNGG	5 cut(s)	228, 234, 240, 632, 820
Bme18I	GGWCC	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	892
BmgT120I	GGNCC	3 cut(s)	62, 230, 236
BmiI	GGNNCC	5 cut(s)	140, 232, 238, 455, 670
BmrFI	CCNGG	5 cut(s)	228, 234, 240, 632, 820
BmsI	GCATC	4 cut(s)	411, 489, 742, 842
BpiI	GAAGAC	1 cut(s)	300
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpuEI	CTTGAG	1 cut(s)	821
BpuMI	CCSGG	3 cut(s)	228, 234, 240
BsaHI	GRCGYC	1 cut(s)	816
BsaJI	CCNNGG	5 cut(s)	226, 232, 238, 325, 630
BsaWI	WCCGGW	2 cut(s)	450, 699
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 233, 239, 413
Bse118I	RCCGGY	1 cut(s)	699
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	2 cut(s)	632, 820
BseDI	CCNNGG	5 cut(s)	226, 232, 238, 325, 630
BseGI	GGATG	2 cut(s)	480, 857
BseLI	CCNNNNNNNGG	4 cut(s)	45, 233, 239, 413
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	1 cut(s)	226
BseX3I	CGGCCG	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	731, 795
Bsh1236I	CGCG	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	6 cut(s)	5, 231, 237, 243, 307, 406
BshNI	GGYRCC	2 cut(s)	138, 453
BshTI	ACCGGT	1 cut(s)	699
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	6 cut(s)	94, 228, 234, 240, 451, 700
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	4 cut(s)	45, 233, 239, 413
BsmAI	GTCTC	2 cut(s)	14, 223
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	6 cut(s)	5, 231, 237, 243, 307, 406
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	172, 384
BspANI	GGCC	6 cut(s)	5, 231, 237, 243, 307, 406
BspCNI	CTCAG	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	5 cut(s)	140, 232, 238, 455, 670
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	2 cut(s)	138, 453
BspTI	CTTAAG	2 cut(s)	587, 842
BsrDI	GCAATG	1 cut(s)	735
BsrFI	RCCGGY	1 cut(s)	699
BssAI	RCCGGY	1 cut(s)	699
BssECI	CCNNGG	5 cut(s)	226, 232, 238, 325, 630
BssMI	GATC	1 cut(s)	48
BssNI	GRCGYC	1 cut(s)	816
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	2 cut(s)	632, 820
Bst4CI	ACNGT	1 cut(s)	970
BstACI	GRCGYC	1 cut(s)	816
BstAFI	CTTAAG	2 cut(s)	587, 842
BstC8I	GCNNGC	4 cut(s)	202, 408, 467, 924
BstDEI	CTNAG	2 cut(s)	212, 653
BstF5I	GGATG	2 cut(s)	480, 857
BstFNI	CGCG	1 cut(s)	172
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	2 cut(s)	14, 223
BstMBI	GATC	1 cut(s)	48
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	462, 533, 838
BstNI	CCWGG	2 cut(s)	632, 820
BstNSI	RCATGY	4 cut(s)	469, 574, 628, 926
BstSCI	CCNGG	5 cut(s)	226, 232, 238, 630, 818
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	731, 795
BstV2I	GAAGAC	1 cut(s)	300
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstZI	CGGCCG	1 cut(s)	241
BsuRI	GGCC	6 cut(s)	5, 231, 237, 243, 307, 406
BtrI	CACGTC	1 cut(s)	892
BtsCI	GGATG	2 cut(s)	480, 857
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	4 cut(s)	202, 408, 467, 924
CciI	TCATGA	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	699
Cfr13I	GGNCC	3 cut(s)	62, 230, 236
CseI	GACGC	1 cut(s)	824
Csp6I	GTAC	5 cut(s)	139, 285, 730, 826, 862
CspAI	ACCGGT	1 cut(s)	699
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	7 cut(s)	269, 466, 485, 571, 625, 643, 923
CviQI	GTAC	5 cut(s)	139, 285, 730, 826, 862
DdeI	CTNAG	2 cut(s)	212, 653
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	2 cut(s)	3, 241
EagI	CGGCCG	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	527
EclXI	CGGCCG	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	62
Eco52I	CGGCCG	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	527
EcoICRI	GAGCTC	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	630, 818
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	7 cut(s)	272, 469, 488, 574, 628, 646, 926
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	7 cut(s)	268, 465, 484, 570, 624, 642, 922
FauI	CCCGC	2 cut(s)	165, 377
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	2 cut(s)	720, 809
FokI	GGATG	2 cut(s)	467, 864
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	2 cut(s)	720, 809
FspBI	CTAG	3 cut(s)	222, 393, 713
GluI	GCNGC	2 cut(s)	720, 809
HaeIII	GGCC	6 cut(s)	5, 231, 237, 243, 307, 406
HapII	CCGG	6 cut(s)	94, 228, 234, 240, 451, 700
HgaI	GACGC	1 cut(s)	824
Hin1I	GRCGYC	1 cut(s)	816
Hin1II	CATG	7 cut(s)	272, 469, 488, 574, 628, 646, 926
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	7 cut(s)	8, 102, 133, 216, 314, 599, 635
HpaII	CCGG	6 cut(s)	94, 228, 234, 240, 451, 700
Hpy166II	GTNNAC	2 cut(s)	435, 622
Hpy188I	TCNGA	4 cut(s)	62, 85, 101, 215
Hpy188III	TCNNGA	9 cut(s)	30, 52, 106, 161, 269, 356, 581, 691, 956
Hpy8I	GTNNAC	2 cut(s)	435, 622
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	970
HpyCH4IV	ACGT	1 cut(s)	891
HpyCH4V	TGCA	6 cut(s)	424, 548, 642, 740, 811, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	462, 533, 838
HpyF3I	CTNAG	2 cut(s)	212, 653
HpySE526I	ACGT	1 cut(s)	891
Hsp92I	GRCGYC	1 cut(s)	816
Hsp92II	CATG	7 cut(s)	272, 469, 488, 574, 628, 646, 926
KpnI	GGTACC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	48
Lsp1109I	GCAGC	2 cut(s)	731, 795
LweI	GCATC	4 cut(s)	411, 489, 742, 842
MaeI	CTAG	3 cut(s)	222, 393, 713
MaeII	ACGT	1 cut(s)	891
MaeIII	GTNAC	4 cut(s)	493, 578, 656, 908
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	6 cut(s)	142, 305, 376, 695, 788, 911
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	3 cut(s)	109, 537, 935
MlyI	GAGTC	2 cut(s)	225, 608
MmeI	TCCRAC	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	951
MseI	TTAA	6 cut(s)	521, 588, 675, 746, 783, 843
MslI	CAYNNNNRTG	2 cut(s)	378, 489
MspA1I	CMGCKG	1 cut(s)	832
MspCI	CTTAAG	2 cut(s)	587, 842
MspI	CCGG	6 cut(s)	94, 228, 234, 240, 451, 700
MspR9I	CCNGG	5 cut(s)	228, 234, 240, 632, 820
MvaI	CCWGG	2 cut(s)	632, 820
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	3 cut(s)	462, 533, 838
NciI	CCSGG	3 cut(s)	228, 234, 240
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	7 cut(s)	272, 469, 488, 574, 628, 646, 926
NlaIV	GGNNCC	5 cut(s)	140, 232, 238, 455, 670
NmuCI	GTSAC	1 cut(s)	578
NspI	RCATGY	4 cut(s)	469, 574, 628, 926
PaeI	GCATGC	2 cut(s)	469, 926
PagI	TCATGA	1 cut(s)	268
PciI	ACATGT	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	951
PfeI	GAWTC	5 cut(s)	8, 102, 133, 314, 635
PflFI	GACNNNGTC	1 cut(s)	299
PinAI	ACCGGT	1 cut(s)	699
PkrI	GCNGC	2 cut(s)	721, 810
PleI	GAGTC	2 cut(s)	224, 607
PpsI	GAGTC	2 cut(s)	224, 607
PscI	ACATGT	1 cut(s)	624
Psp124BI	GAGCTC	1 cut(s)	529
Psp6I	CCWGG	2 cut(s)	630, 818
PspGI	CCWGG	2 cut(s)	630, 818
PspN4I	GGNNCC	5 cut(s)	140, 232, 238, 455, 670
PspPI	GGNCC	3 cut(s)	62, 230, 236
PsyI	GACNNNGTC	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	832
RsaI	GTAC	5 cut(s)	140, 286, 731, 827, 863
RsaNI	GTAC	5 cut(s)	139, 285, 730, 826, 862
RseI	CAYNNNNRTG	2 cut(s)	378, 489
SacI	GAGCTC	1 cut(s)	529
SaqAI	TTAA	6 cut(s)	521, 588, 675, 746, 783, 843
SatI	GCNGC	2 cut(s)	720, 809
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	3 cut(s)	62, 230, 236
SchI	GAGTC	2 cut(s)	225, 608
ScrFI	CCNGG	5 cut(s)	228, 234, 240, 632, 820
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	4 cut(s)	411, 489, 742, 842
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	2 cut(s)	378, 489
SmlI	CTYRAG	3 cut(s)	587, 800, 842
SmoI	CTYRAG	3 cut(s)	587, 800, 842
SphI	GCATGC	2 cut(s)	469, 926
Sse9I	AATT	3 cut(s)	109, 537, 935
SsiI	CCGC	2 cut(s)	172, 384
SspMI	CTAG	3 cut(s)	222, 393, 713
SstI	GAGCTC	1 cut(s)	529
StyD4I	CCNGG	5 cut(s)	226, 232, 238, 630, 818
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	970
TaiI	ACGT	1 cut(s)	894
TaqI	TCGA	4 cut(s)	51, 122, 179, 357
TaqII	GACCGA	1 cut(s)	945
TasI	AATT	3 cut(s)	109, 537, 935
TatI	WGTACW	1 cut(s)	861
TfiI	GAWTC	5 cut(s)	8, 102, 133, 314, 635
Tru1I	TTAA	6 cut(s)	521, 588, 675, 746, 783, 843
Tru9I	TTAA	6 cut(s)	521, 588, 675, 746, 783, 843
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	2 cut(s)	719, 808
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	3 cut(s)	257, 285, 325
TspGWI	ACGGA	1 cut(s)	959
TspRI	CASTG	1 cut(s)	511
Tth111I	GACNNNGTC	1 cut(s)	299
Vha464I	CTTAAG	2 cut(s)	587, 842
VpaK11BI	GGWCC	1 cut(s)	62
XceI	RCATGY	4 cut(s)	469, 574, 628, 926
XmiI	GTMKAC	1 cut(s)	621
XmnI	GAANNNNTTC	1 cut(s)	951
XspI	CTAG	3 cut(s)	222, 393, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.