Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012491

Physical Location & Seq

Genomic Coordinates Forward (+)

41108794 .. 41112058

Gene Structure 3265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G495100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCCGATTCAAAAGTAGAGACGATCTCAAGACTGGCCCAATGGAGAATCGAGAATTTCGGGCCTTGCTCTTACAAAAAGTCTGATCCTTTCAAGCTCGGAATTTGGAATTGGCATTTTTCTATAGAGAAGAATCGGTACCTCTACATTCGTTTGTTTCCTGAGCCATCACGGGTGTCCAAAGAACAGCCTCCTCTTGCTCGCTTTGTTCTTAGAGTCTCTAGTTCCGGCCCTGGCCGCAGACCCTACATCTCTCCTGTTCATGAAAGATTGCTTCGCACAAGTGAAGACTTTGTCTGGCCTGTTGATTCCACCTTCCTTGGTCGCTTCATCATTGATGTTGAGTTTCTCGAATTGAAGATATGCCCTTTAAATGGTGGGGAAGCTAGTCCTGTATGGCCTGCTGATGGATTGATGCAATCGGTATCAACCCAAAGCACTCTCCGATGCCTCTCTCGCATGCTTGATGAGGGCATCCATGCTGATGTCACTATCAACACTGCTGATGGCACTTTAAGAGCTCACAAAGCAATTCTTTCTGCAACTTCTCCTGTGTTCCAAAGCATGTTCAATCACGACCTTAAGGAAAAAGAGTCCTCCACAATCCACATAAAAGACATGTCCCTGGAATCTTGTATGGCTCTTCTCAGTTACCTGTATGGAACCATTAAACAAGAGAATTTCTGGAAGCACCGGTTAGCACTTCTAGGTGCGGCGAGCAAATATGACATTGCAGACCTAAAAGATGCCTGTGAGGAAAGCCTTCTGGAAGATATTAACTCCACAAATGTCCTTGCGAGACTGCATGAGGCCTGGTTGTACCAGCTGAATATGCTGAAGAAAGGATGCTTGATGTACTTGTTTGATTTTGGCAAAATATACGATGTTAGAGACGAAGTAAACGACTTTTTCAGGCATGCAGACAGAGACTTGATGATGGAAATGTTTCAAGAGGTGCTTACTGTTTGGAAGCCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031463 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

327

Amino Acids

37.6

Weight (kDa)

6.16

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21780 AT1G21780
fragaria_vesca	FvH4_2g27041 FvH4_2g27041 FvH4_2g27041
malus_domestica	MD08G1162000.v1.1
prunus_persica	Prupe.1G495000_v2.0.a1 Prupe.1G495100_v2.0.a1
pyrus_communis	pycom08g14000
rosa_chinensis	RchiOBHm_Chr6g0295921
rosa_laevigata	RLG00000011756
rosa_multiflora	Rmu_sc0003139.1_g000009
rosa_roxburghii	Rroxscaffold_7G00172050
rosa_rugosa	Rorug06G0255100
rosa_samantha	Rh6AG368900 Rh6BG376600 Rh6CG382800 Rh6DG369400
rosa_wichuraiana	Rw6G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	138
AciI	CCGC	2 cut(s)	238, 713
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	2 cut(s)	3, 235
AcsI	RAATTY	3 cut(s)	55, 102, 679
AcuI	CTGAAG	1 cut(s)	857
AfaI	GTAC	3 cut(s)	140, 821, 857
AfiI	CCNNNNNNNGG	2 cut(s)	374, 407
AflII	CTTAAG	1 cut(s)	581
AflIII	ACRYGT	1 cut(s)	618
AgeI	ACCGGT	1 cut(s)	693
AgsI	TTSAA	5 cut(s)	12, 94, 358, 571, 950
AjnI	CCWGG	3 cut(s)	232, 624, 812
AjuI	GAANNNNNNNTTGG	2 cut(s)	94, 126
AluBI	AGCT	4 cut(s)	97, 386, 521, 826
AluI	AGCT	4 cut(s)	97, 386, 521, 826
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	5 cut(s)	14, 223, 793, 885, 921
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	8 cut(s)	3, 36, 62, 229, 235, 299, 398, 810
ApoI	RAATTY	3 cut(s)	55, 102, 679
AsiGI	ACCGGT	1 cut(s)	693
Asp700I	GAANNNNTTC	2 cut(s)	762, 945
Asp718I	GGTACC	1 cut(s)	138
AspS9I	GGNCC	3 cut(s)	37, 62, 230
BanI	GGYRCC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	523
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	523
BccI	CCATC	4 cut(s)	175, 401, 500, 931
BciT130I	CCWGG	3 cut(s)	234, 626, 814
BcoDI	GTCTC	5 cut(s)	14, 223, 793, 885, 921
BfaI	CTAG	3 cut(s)	222, 387, 707
BfmI	CTRYAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	581
BisI	GCNGC	2 cut(s)	238, 714
BlsI	GCNGC	2 cut(s)	239, 715
Bme1390I	CCNGG	3 cut(s)	234, 626, 814
BmgT120I	GGNCC	3 cut(s)	37, 62, 230
BmiI	GGNNCC	2 cut(s)	140, 664
BmrFI	CCNGG	3 cut(s)	234, 626, 814
BmsI	GCATC	5 cut(s)	405, 437, 483, 736, 836
BpiI	GAAGAC	1 cut(s)	294
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	13
BsaJI	CCNNGG	3 cut(s)	232, 319, 624
BsaWI	WCCGGW	1 cut(s)	693
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 407
Bse118I	RCCGGY	1 cut(s)	693
Bse1I	ACTGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	729
BseBI	CCWGG	3 cut(s)	234, 626, 814
BseDI	CCNNGG	3 cut(s)	232, 319, 624
BseGI	GGATG	2 cut(s)	474, 851
BseLI	CCNNNNNNNGG	2 cut(s)	374, 407
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	2 cut(s)	153, 661
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	183
BshFI	GGCC	8 cut(s)	5, 38, 64, 231, 237, 301, 400, 812
BshNI	GGYRCC	1 cut(s)	138
BshTI	ACCGGT	1 cut(s)	693
BsiHKAI	GWGCWC	1 cut(s)	523
BsiSI	CCGG	2 cut(s)	228, 694
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	2 cut(s)	374, 407
BsmAI	GTCTC	5 cut(s)	14, 223, 793, 885, 921
BsmBI	CGTCTC	2 cut(s)	14, 885
BsmFI	GGGAC	1 cut(s)	607
BsnI	GGCC	8 cut(s)	5, 38, 64, 231, 237, 301, 400, 812
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp143I	GATC	2 cut(s)	24, 85
BspACI	CCGC	2 cut(s)	238, 713
BspANI	GGCC	8 cut(s)	5, 38, 64, 231, 237, 301, 400, 812
BspCNI	CTCAG	2 cut(s)	154, 660
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	140, 664
BspPI	GGATC	1 cut(s)	80
BspQI	GCTCTTC	1 cut(s)	648
BspT107I	GGYRCC	1 cut(s)	138
BspTI	CTTAAG	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	693
BsrI	ACTGG	1 cut(s)	39
BssAI	RCCGGY	1 cut(s)	693
BssECI	CCNNGG	3 cut(s)	232, 319, 624
BssMI	GATC	2 cut(s)	24, 85
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	3 cut(s)	234, 626, 814
Bst4CI	ACNGT	1 cut(s)	964
Bst6I	CTCTTC	1 cut(s)	648
BstAFI	CTTAAG	1 cut(s)	581
BstC8I	GCNNGC	5 cut(s)	202, 402, 461, 718, 918
BstDEI	CTNAG	3 cut(s)	162, 212, 647
BstF5I	GGATG	2 cut(s)	474, 851
BstKTI	GATC	2 cut(s)	27, 88
BstMAI	GTCTC	5 cut(s)	14, 223, 793, 885, 921
BstMBI	GATC	2 cut(s)	24, 85
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 456, 527, 832
BstNI	CCWGG	3 cut(s)	234, 626, 814
BstNSI	RCATGY	4 cut(s)	463, 568, 622, 920
BstSCI	CCNGG	3 cut(s)	232, 624, 812
BstSFI	CTRYAG	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	294
BsuRI	GGCC	8 cut(s)	5, 38, 64, 231, 237, 301, 400, 812
BtsCI	GGATG	2 cut(s)	474, 851
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	5 cut(s)	202, 402, 461, 718, 918
CciI	TCATGA	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	693
Cfr13I	GGNCC	3 cut(s)	37, 62, 230
Csp6I	GTAC	3 cut(s)	139, 820, 856
CspAI	ACCGGT	1 cut(s)	693
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	7 cut(s)	263, 460, 479, 565, 619, 806, 917
CviQI	GTAC	3 cut(s)	139, 820, 856
DdeI	CTNAG	3 cut(s)	162, 212, 647
DpnI	GATC	2 cut(s)	26, 87
DpnII	GATC	2 cut(s)	24, 85
DraI	TTTAAA	1 cut(s)	372
EaeI	YGGCCR	2 cut(s)	3, 235
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	319
Eco147I	AGGCCT	1 cut(s)	812
Eco24I	GRGCYC	1 cut(s)	523
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	857
EcoICRI	GAGCTC	1 cut(s)	521
EcoRII	CCWGG	3 cut(s)	232, 624, 812
EcoT14I	CCWWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	319
Esp3I	CGTCTC	2 cut(s)	14, 885
FaeI	CATG	7 cut(s)	266, 463, 482, 568, 622, 809, 920
FalI	AAGNNNNNCTT	4 cut(s)	519, 551, 942, 974
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	7 cut(s)	262, 459, 478, 564, 618, 805, 916
Fnu4HI	GCNGC	2 cut(s)	238, 714
FokI	GGATG	2 cut(s)	461, 858
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	2 cut(s)	238, 714
FspBI	CTAG	3 cut(s)	222, 387, 707
GluI	GCNGC	2 cut(s)	238, 714
HaeIII	GGCC	8 cut(s)	5, 38, 64, 231, 237, 301, 400, 812
HapII	CCGG	2 cut(s)	228, 694
Hin1II	CATG	7 cut(s)	266, 463, 482, 568, 622, 809, 920
HinfI	GANTC	7 cut(s)	8, 48, 133, 216, 308, 593, 629
HpaII	CCGG	2 cut(s)	228, 694
Hpy166II	GTNNAC	1 cut(s)	901
Hpy188I	TCNGA	3 cut(s)	85, 101, 446
Hpy188III	TCNNGA	9 cut(s)	30, 52, 161, 263, 350, 575, 685, 767, 950
Hpy8I	GTNNAC	1 cut(s)	901
HpyAV	CCTTC	2 cut(s)	325, 773
HpyCH4III	ACNGT	1 cut(s)	964
HpyCH4V	TGCA	5 cut(s)	418, 542, 734, 805, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 456, 527, 832
HpyF3I	CTNAG	3 cut(s)	162, 212, 647
Hsp92II	CATG	7 cut(s)	266, 463, 482, 568, 622, 809, 920
KpnI	GGTACC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	24, 85
LguI	GCTCTTC	1 cut(s)	648
LweI	GCATC	5 cut(s)	405, 437, 483, 736, 836
MaeI	CTAG	3 cut(s)	222, 387, 707
MaeIII	GTNAC	2 cut(s)	487, 650
MalI	GATC	2 cut(s)	26, 87
MboI	GATC	2 cut(s)	24, 85
MboII	GAAGA	6 cut(s)	142, 299, 370, 635, 782, 850
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	6 cut(s)	55, 102, 109, 353, 531, 679
MlyI	GAGTC	2 cut(s)	225, 602
MnlI	CCTC	9 cut(s)	152, 201, 204, 461, 463, 607, 748, 802, 946
MroXI	GAANNNNTTC	2 cut(s)	762, 945
MseI	TTAA	5 cut(s)	371, 515, 582, 669, 777
MslI	CAYNNNNRTG	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	826
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	2 cut(s)	228, 694
MspR9I	CCNGG	3 cut(s)	234, 626, 814
MvaI	CCWGG	3 cut(s)	234, 626, 814
MwoI	GCNNNNNNNGC	4 cut(s)	237, 456, 527, 832
NdeII	GATC	2 cut(s)	24, 85
NlaIII	CATG	7 cut(s)	266, 463, 482, 568, 622, 809, 920
NlaIV	GGNNCC	2 cut(s)	140, 664
NmuCI	GTSAC	1 cut(s)	487
NspI	RCATGY	4 cut(s)	463, 568, 622, 920
PaeI	GCATGC	2 cut(s)	463, 920
PagI	TCATGA	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	812
PciI	ACATGT	1 cut(s)	618
PciSI	GCTCTTC	1 cut(s)	648
PcsI	WCGNNNNNNNCGW	1 cut(s)	900
PdmI	GAANNNNTTC	2 cut(s)	762, 945
PfeI	GAWTC	5 cut(s)	8, 48, 133, 308, 629
PflFI	GACNNNGTC	1 cut(s)	293
PinAI	ACCGGT	1 cut(s)	693
PkrI	GCNGC	2 cut(s)	239, 715
PleI	GAGTC	2 cut(s)	224, 601
PpsI	GAGTC	2 cut(s)	224, 601
PscI	ACATGT	1 cut(s)	618
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	3 cut(s)	232, 624, 812
PspGI	CCWGG	3 cut(s)	232, 624, 812
PspN4I	GGNNCC	2 cut(s)	140, 664
PspPI	GGNCC	3 cut(s)	37, 62, 230
PsyI	GACNNNGTC	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	826
RsaI	GTAC	3 cut(s)	140, 821, 857
RsaNI	GTAC	3 cut(s)	139, 820, 856
RseI	CAYNNNNRTG	1 cut(s)	483
SacI	GAGCTC	1 cut(s)	523
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	5 cut(s)	371, 515, 582, 669, 777
SatI	GCNGC	2 cut(s)	238, 714
Sau3AI	GATC	2 cut(s)	24, 85
Sau96I	GGNCC	3 cut(s)	37, 62, 230
SchI	GAGTC	2 cut(s)	225, 602
ScrFI	CCNGG	3 cut(s)	234, 626, 814
SduI	GDGCHC	1 cut(s)	523
SfaNI	GCATC	5 cut(s)	405, 437, 483, 736, 836
SfcI	CTRYAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	2 cut(s)	28, 581
SmoI	CTYRAG	2 cut(s)	28, 581
SphI	GCATGC	2 cut(s)	463, 920
Sse9I	AATT	6 cut(s)	55, 102, 109, 353, 531, 679
SseBI	AGGCCT	1 cut(s)	812
SsiI	CCGC	2 cut(s)	238, 713
SspMI	CTAG	3 cut(s)	222, 387, 707
SstI	GAGCTC	1 cut(s)	523
StuI	AGGCCT	1 cut(s)	812
StyD4I	CCNGG	3 cut(s)	232, 624, 812
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	964
TaqI	TCGA	2 cut(s)	51, 351
TasI	AATT	6 cut(s)	55, 102, 109, 353, 531, 679
TatI	WGTACW	1 cut(s)	855
TauI	GCSGC	2 cut(s)	240, 716
TfiI	GAWTC	5 cut(s)	8, 48, 133, 308, 629
Tru1I	TTAA	5 cut(s)	371, 515, 582, 669, 777
Tru9I	TTAA	5 cut(s)	371, 515, 582, 669, 777
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	487
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	3 cut(s)	251, 279, 319
TspRI	CASTG	1 cut(s)	505
Tth111I	GACNNNGTC	1 cut(s)	293
Vha464I	CTTAAG	1 cut(s)	581
XapI	RAATTY	3 cut(s)	55, 102, 679
XceI	RCATGY	4 cut(s)	463, 568, 622, 920
XmnI	GAANNNNTTC	2 cut(s)	762, 945
XspI	CTAG	3 cut(s)	222, 387, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.