Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0012491

Physical Location & Seq

Genomic Coordinates Reverse (-)

56258939 .. 56261014

Gene Structure 2076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G032170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGGATTCCAAAGTAGAGACCATCTCACGATTAGCCCAATGGAGGATTGACAATTTCGGACCCTGCTCTTACATAAAGTCCGAGCCTTTCAAGCTCGGAATCTGGAATTGGTACTACCCATTATTCCCCTTTTCTCTAATTTCTATAAGAATCGGTATCTGTATATTCGTTTGTTTCCAACAATCGCGTTTGTCTAAGGAACAGCCTCCTCTTGCTCGCTTTGTGCTTAGAATTTCGAGCTCCGGCAATGGCCGTCAACCTTATATCTCCCCTGTTCATGAAAGACAGCTTCGCACAATGGATGACTTTGCCTGGCCTGTTAATTCCAGCTTCAATGGTCCCTTCGTCATTGATGTAGAGTTTCTTGACTTGAAGATATCCCCTATAAATGGTGGGGAGGCTACTCCTGTATGGCCTACTGGTGGATTGATGCAGTCTTTGTCAACCCAAAGCACTCTGAGATGCCTCTCTCGAATGCTTGATGAGGGCATCCATGCTGATGTCACCATCAGCACTGCTGAAGGATCTTTAAAAGCTCACAAAGCAATTCTTTCGGCAAATTCTCCTGTGTTCCAGAGCATGTTCAATCATGACCTTAAAGAAACAGTGTCCTCAACAATTGACATAGAAGACATGTCACTGGAGTCTTGCACGGCCCTTATCAGTTATCTGTATGGAACCATTAAACAACAGGATTTCTGGAAGCACCGGTTGGCACTTCTAGGTGCGGCAAACAAATATGACATGTCAGACCTAAAAGATGCTTGTGAGGAGAGCCTTATGGAAGATATTAACTCTGGAAATGTCCTGGAGAGGCTGCAAGAGGCCGGGTTATACCAACTGCCCAAGCTGAAGAAAGGGTGTTTGCTGTACTTGTTTGGTTTTGGCAAGATATATGATGTTAGACATGAGATAGATACCTTTTTCAAGTATGCAGACAGAGAGTTGATGACCGACATGTTTCAAGAAGTCCTTACAAGTTGGAAGCCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031463 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

332

Amino Acids

37.71

Weight (kDa)

5.6

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	159 - 262	2.8e-21	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21780 AT1G21780
fragaria_vesca	FvH4_2g27041 FvH4_2g27041 FvH4_2g27041
malus_domestica	MD08G1162000.v1.1
prunus_persica	Prupe.1G495000_v2.0.a1 Prupe.1G495100_v2.0.a1
pyrus_communis	pycom08g14000
rosa_chinensis	RchiOBHm_Chr6g0295921
rosa_laevigata	RLG00000011756
rosa_multiflora	Rmu_sc0003139.1_g000009
rosa_roxburghii	Rroxscaffold_7G00172050
rosa_rugosa	Rorug06G0255100
rosa_samantha	Rh6AG368900 Rh6BG376600 Rh6CG382800 Rh6DG369400
rosa_wichuraiana	Rw6G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	190
AciI	CCGC	2 cut(s)	5, 731
AclWI	GGATC	1 cut(s)	535
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	2 cut(s)	234, 562
AcuI	CTGAAG	2 cut(s)	543, 875
AfaI	GTAC	2 cut(s)	116, 875
AfiI	CCNNNNNNNGG	3 cut(s)	45, 392, 425
AflIII	ACRYGT	3 cut(s)	636, 747, 960
AgeI	ACCGGT	1 cut(s)	711
AgsI	TTSAA	6 cut(s)	94, 337, 376, 589, 931, 968
AjnI	CCWGG	2 cut(s)	314, 810
AjuI	GAANNNNNNNTTGG	4 cut(s)	94, 126, 698, 730
AluBI	AGCT	6 cut(s)	97, 243, 292, 333, 539, 853
AluI	AGCT	6 cut(s)	97, 243, 292, 333, 539, 853
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	535
AoxI	GGCC	5 cut(s)	253, 317, 416, 657, 828
ApeKI	GCWGC	1 cut(s)	820
ApoI	RAATTY	2 cut(s)	234, 562
AsiGI	ACCGGT	1 cut(s)	711
AspS9I	GGNCC	3 cut(s)	62, 341, 658
AsuC2I	CCSGG	1 cut(s)	832
AsuHPI	GGTGA	1 cut(s)	499
AvaII	GGWCC	2 cut(s)	62, 341
BanII	GRGCYC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	807
BccI	CCATC	2 cut(s)	32, 518
BceAI	ACGGC	2 cut(s)	240, 672
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	2 cut(s)	316, 812
BcnI	CCSGG	1 cut(s)	832
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	725
BisI	GCNGC	2 cut(s)	732, 821
BlsI	GCNGC	2 cut(s)	733, 822
Bme1390I	CCNGG	3 cut(s)	316, 812, 832
Bme18I	GGWCC	2 cut(s)	62, 341
BmgT120I	GGNCC	3 cut(s)	62, 341, 658
BmiI	GGNNCC	3 cut(s)	64, 343, 682
BmrFI	CCNGG	3 cut(s)	316, 812, 832
BmsI	GCATC	4 cut(s)	423, 455, 501, 754
BpiI	GAAGAC	1 cut(s)	639
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	2 cut(s)	665, 833
BpuMI	CCSGG	1 cut(s)	832
BsaI	GGTCTC	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	711
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 392, 425
Bse118I	RCCGGY	1 cut(s)	711
Bse1I	ACTGG	2 cut(s)	427, 648
Bse3DI	GCAATG	1 cut(s)	256
BseBI	CCWGG	2 cut(s)	316, 812
BseGI	GGATG	2 cut(s)	310, 492
BseLI	CCNNNNNNNGG	3 cut(s)	45, 392, 425
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	2 cut(s)	427, 648
BseRI	GAGGAG	2 cut(s)	201, 788
BseXI	GCAGC	1 cut(s)	807
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	5 cut(s)	255, 319, 418, 659, 830
BshTI	ACCGGT	1 cut(s)	711
BsiHKAI	GWGCWC	1 cut(s)	245
BsiSI	CCGG	3 cut(s)	246, 712, 831
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	3 cut(s)	45, 392, 425
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	5 cut(s)	255, 319, 418, 659, 830
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	527
BspACI	CCGC	2 cut(s)	5, 731
BspANI	GGCC	5 cut(s)	255, 319, 418, 659, 830
BspCNI	CTCAG	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	190
BspHI	TCATGA	2 cut(s)	280, 592
BspLI	GGNNCC	3 cut(s)	64, 343, 682
BspPI	GGATC	1 cut(s)	535
BspTNI	GGTCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	711
BsrI	ACTGG	2 cut(s)	427, 648
BssAI	RCCGGY	1 cut(s)	711
BssMI	GATC	1 cut(s)	527
Bst2UI	CCWGG	2 cut(s)	316, 812
Bst4CI	ACNGT	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	220, 993
BstDEI	CTNAG	3 cut(s)	198, 230, 461
BstF5I	GGATG	2 cut(s)	310, 492
BstFNI	CGCG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	530
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	527
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 545
BstNI	CCWGG	2 cut(s)	316, 812
BstNSI	RCATGY	4 cut(s)	586, 640, 751, 964
BstSCI	CCNGG	3 cut(s)	314, 810, 830
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	807
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	527
BsuRI	GGCC	5 cut(s)	255, 319, 418, 659, 830
BtsCI	GGATG	2 cut(s)	310, 492
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	3 cut(s)	516, 615, 641
Cac8I	GCNNGC	2 cut(s)	220, 993
CciI	TCATGA	2 cut(s)	280, 592
Cfr10I	RCCGGY	1 cut(s)	711
Cfr13I	GGNCC	3 cut(s)	62, 341, 658
Csp6I	GTAC	2 cut(s)	115, 874
CspAI	ACCGGT	1 cut(s)	711
CviAII	CATG	8 cut(s)	281, 497, 583, 593, 637, 748, 911, 961
CviQI	GTAC	2 cut(s)	115, 874
DdeI	CTNAG	3 cut(s)	198, 230, 461
DpnI	GATC	1 cut(s)	529
DpnII	GATC	1 cut(s)	527
DraI	TTTAAA	1 cut(s)	534
EaeI	YGGCCR	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	62, 341
Eco53kI	GAGCTC	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	543, 875
EcoICRI	GAGCTC	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	314, 810
EcoRV	GATATC	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	8 cut(s)	284, 500, 586, 596, 640, 751, 914, 964
FalI	AAGNNNNNCTT	4 cut(s)	537, 569, 960, 992
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	8 cut(s)	280, 496, 582, 592, 636, 747, 910, 960
Fnu4HI	GCNGC	2 cut(s)	732, 821
FokI	GGATG	2 cut(s)	317, 479
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	732, 821
FspBI	CTAG	1 cut(s)	725
GluI	GCNGC	2 cut(s)	732, 821
GsuI	CTGGAG	2 cut(s)	665, 833
HaeIII	GGCC	5 cut(s)	255, 319, 418, 659, 830
HapII	CCGG	3 cut(s)	246, 712, 831
Hin1II	CATG	8 cut(s)	284, 500, 586, 596, 640, 751, 914, 964
HincII	GTYRAC	2 cut(s)	260, 447
HindII	GTYRAC	2 cut(s)	260, 447
HinfI	GANTC	4 cut(s)	8, 102, 153, 647
HpaII	CCGG	3 cut(s)	246, 712, 831
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	2 cut(s)	260, 447
Hpy188I	TCNGA	5 cut(s)	62, 85, 101, 462, 754
Hpy8I	GTNNAC	2 cut(s)	260, 447
HpyAV	CCTTC	2 cut(s)	355, 518
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4V	TGCA	5 cut(s)	436, 654, 823, 938, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 545
HpyF3I	CTNAG	3 cut(s)	198, 230, 461
Hsp92II	CATG	8 cut(s)	284, 500, 586, 596, 640, 751, 914, 964
Kzo9I	GATC	1 cut(s)	527
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	1 cut(s)	807
LweI	GCATC	4 cut(s)	423, 455, 501, 754
MaeI	CTAG	1 cut(s)	725
MaeIII	GTNAC	2 cut(s)	505, 639
MalI	GATC	1 cut(s)	529
MboI	GATC	1 cut(s)	527
MboII	GAAGA	4 cut(s)	388, 644, 800, 868
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	527
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	8 cut(s)	55, 109, 141, 234, 325, 549, 562, 621
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	2 cut(s)	205, 965
MseI	TTAA	5 cut(s)	324, 533, 600, 687, 795
MslI	CAYNNNNRTG	1 cut(s)	501
MspI	CCGG	3 cut(s)	246, 712, 831
MspR9I	CCNGG	3 cut(s)	316, 812, 832
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	2 cut(s)	316, 812
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	94, 545
NciI	CCSGG	1 cut(s)	832
NdeII	GATC	1 cut(s)	527
NlaIII	CATG	8 cut(s)	284, 500, 586, 596, 640, 751, 914, 964
NlaIV	GGNNCC	3 cut(s)	64, 343, 682
NmuCI	GTSAC	2 cut(s)	505, 639
NspI	RCATGY	4 cut(s)	586, 640, 751, 964
PagI	TCATGA	2 cut(s)	280, 592
PciI	ACATGT	3 cut(s)	636, 747, 960
PctI	GAATGC	1 cut(s)	483
PfeI	GAWTC	3 cut(s)	8, 102, 153
PfoI	TCCNGGA	1 cut(s)	810
PinAI	ACCGGT	1 cut(s)	711
PkrI	GCNGC	2 cut(s)	733, 822
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PscI	ACATGT	3 cut(s)	636, 747, 960
Psp124BI	GAGCTC	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	314, 810
PspGI	CCWGG	2 cut(s)	314, 810
PspN4I	GGNNCC	3 cut(s)	64, 343, 682
PspPI	GGNCC	3 cut(s)	62, 341, 658
PsuI	RGATCY	1 cut(s)	527
RsaI	GTAC	2 cut(s)	116, 875
RsaNI	GTAC	2 cut(s)	115, 874
RseI	CAYNNNNRTG	1 cut(s)	501
SacI	GAGCTC	1 cut(s)	245
SaqAI	TTAA	5 cut(s)	324, 533, 600, 687, 795
SatI	GCNGC	2 cut(s)	732, 821
Sau3AI	GATC	1 cut(s)	527
Sau96I	GGNCC	3 cut(s)	62, 341, 658
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	3 cut(s)	316, 812, 832
SduI	GDGCHC	1 cut(s)	245
SfaNI	GCATC	4 cut(s)	423, 455, 501, 754
SinI	GGWCC	2 cut(s)	62, 341
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	8 cut(s)	55, 109, 141, 234, 325, 549, 562, 621
SsiI	CCGC	2 cut(s)	5, 731
SspMI	CTAG	1 cut(s)	725
SstI	GAGCTC	1 cut(s)	245
StyD4I	CCNGG	3 cut(s)	314, 810, 830
TaaI	ACNGT	1 cut(s)	610
TaqI	TCGA	2 cut(s)	239, 475
TaqII	GACCGA	1 cut(s)	971
TasI	AATT	8 cut(s)	55, 109, 141, 234, 325, 549, 562, 621
TatI	WGTACW	1 cut(s)	873
TauI	GCSGC	1 cut(s)	734
TfiI	GAWTC	3 cut(s)	8, 102, 153
Tru1I	TTAA	5 cut(s)	324, 533, 600, 687, 795
Tru9I	TTAA	5 cut(s)	324, 533, 600, 687, 795
TscAI	CASTG	3 cut(s)	523, 615, 648
TseFI	GTSAC	2 cut(s)	505, 639
TseI	GCWGC	1 cut(s)	820
Tsp45I	GTSAC	2 cut(s)	505, 639
TspDTI	ATGAA	2 cut(s)	269, 297
TspRI	CASTG	3 cut(s)	523, 615, 648
VpaK11BI	GGWCC	2 cut(s)	62, 341
XapI	RAATTY	2 cut(s)	234, 562
XceI	RCATGY	4 cut(s)	586, 640, 751, 964
XspI	CTAG	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.