Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012491

Physical Location & Seq

Genomic Coordinates Forward (+)

13032683 .. 13034808

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCCGATTCCAAAGTGGAGACAATCTCCCGATTAGCCCAATGGAGGATCGAGAACTTCGGACCTTGCTCTTACAAAAAGTCCGACCCTTTCCGGCTCGGAATCTGGAATTGGCATTTTTCGATAGAGAAGAATCGGTACCTCTACATTCGTCTGTTTCCAGAGCCGTCGCGGGCGTCGAAAGAACAGCCTCCCCTTGCTCGCTTTGTTCTCAGAGTCTCTAGCTCCGGCCCCGGCCGCAGAACTGACAGAGGATCTTCACATGTCCCTTTTCATGAAAGACTGCTTCGTACAAGTGAAGACTTTGTCTGGCCTGTTGATTCCACCTTCCTTGGTCGCTTCATCATTGATGTTGAGTTTCTTGACTTGAAGATATGCCCTTTAAATGGCGGGGAAGCTAGTCCTGTATGGCCTGCTGATGGATTGATGCAATCCGTGTCAACCCAAAGCACTCTCCGGTGCCTCTCTCGCATGCTTTATGAGGGCATCCATGCTGATGTTACTATCAACACTGCTGATGGCAGTTTAAGAGCTCACAAAGCAATTCTTTCTGCAACTTCTCCCGTGTTCCAAAGCATGTTCAGTCACGACCTTAAGGAAAAAGAGTCCTCCATAATCCACATAGTAGACATGTCCCTGGAATCTTGCATGGCTCTTCTAAGTTACCTCTATGGAACCATTAAACAAGAAGATTTCTGGAAGCACCGGTTGGCACTTCTAGGTGCGGCAAACAAGTACGACATTGCAGACTTAAAAGATGCTTGTGAGGAAAGCCTTTTGGAAGATATTAACTCGACGAATGTCCTTGAGAGGCTGCAAGACGCCTGGTTGTACCAGCTGAATAAGCTTAAGAAAGGATGCTTGATGTACTTGTTTGATTTTGGAAAAATATATGACGTGAGAGAAGAAGTAAGTAACTTTTTCAGGCATGCAGACCGAGAATTGATGACGGAAATGTTTCAGGAGGTGCTTACTGTTTGGAAGCCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031463 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB

Protein Analysis

331

Amino Acids

38.03

Weight (kDa)

6.17

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21780 AT1G21780
fragaria_vesca	FvH4_2g27041 FvH4_2g27041 FvH4_2g27041
malus_domestica	MD08G1162000.v1.1
prunus_persica	Prupe.1G495000_v2.0.a1 Prupe.1G495100_v2.0.a1
pyrus_communis	pycom08g14000
rosa_chinensis	RchiOBHm_Chr6g0295921
rosa_laevigata	RLG00000011756
rosa_multiflora	Rmu_sc0003139.1_g000009
rosa_roxburghii	Rroxscaffold_7G00172050
rosa_rugosa	Rorug06G0255100
rosa_samantha	Rh6AG368900 Rh6BG376600 Rh6CG382800 Rh6DG369400
rosa_wichuraiana	Rw6G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	138
AccB1I	GGYRCC	2 cut(s)	138, 459
AccI	GTMKAC	1 cut(s)	627
AccII	CGCG	1 cut(s)	172
AciI	CCGC	4 cut(s)	172, 238, 390, 725
AclWI	GGATC	2 cut(s)	56, 262
AcoI	YGGCCR	2 cut(s)	3, 235
AcyI	GRCGYC	2 cut(s)	176, 822
AfaI	GTAC	5 cut(s)	140, 292, 737, 833, 869
AfiI	CCNNNNNNNGG	3 cut(s)	45, 386, 419
AflII	CTTAAG	2 cut(s)	593, 848
AflIII	ACRYGT	2 cut(s)	262, 630
AgeI	ACCGGT	1 cut(s)	705
AgsI	TTSAA	1 cut(s)	370
AjiI	CACGTC	1 cut(s)	898
AjnI	CCWGG	2 cut(s)	636, 824
AjuI	GAANNNNNNNTTGG	4 cut(s)	94, 126, 692, 724
AluBI	AGCT	5 cut(s)	225, 398, 533, 838, 847
AluI	AGCT	5 cut(s)	225, 398, 533, 838, 847
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	2 cut(s)	14, 223
AlwI	GGATC	2 cut(s)	56, 262
AoxI	GGCC	5 cut(s)	3, 229, 235, 311, 410
ApeKI	GCWGC	1 cut(s)	814
AsiGI	ACCGGT	1 cut(s)	705
Asp700I	GAANNNNTTC	1 cut(s)	957
Asp718I	GGTACC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	62, 230
AsuC2I	CCSGG	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	62
BanI	GGYRCC	2 cut(s)	138, 459
BanII	GRGCYC	1 cut(s)	535
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	1 cut(s)	801
BccI	CCATC	2 cut(s)	413, 512
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	638, 826
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	14, 223
BfaI	CTAG	3 cut(s)	222, 399, 719
BfrI	CTTAAG	2 cut(s)	593, 848
BisI	GCNGC	3 cut(s)	238, 726, 815
BlsI	GCNGC	3 cut(s)	239, 727, 816
Bme1390I	CCNGG	3 cut(s)	234, 638, 826
Bme18I	GGWCC	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	898
BmgT120I	GGNCC	2 cut(s)	62, 230
BmiI	GGNNCC	4 cut(s)	140, 232, 461, 676
BmrFI	CCNGG	3 cut(s)	234, 638, 826
BmsI	GCATC	4 cut(s)	417, 495, 748, 848
BoxI	GACNNNNGTC	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	306
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpuEI	CTTGAG	1 cut(s)	827
BpuMI	CCSGG	1 cut(s)	234
BsaHI	GRCGYC	2 cut(s)	176, 822
BsaJI	CCNNGG	3 cut(s)	232, 331, 636
BsaWI	WCCGGW	2 cut(s)	456, 705
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 386, 419
Bse118I	RCCGGY	1 cut(s)	705
Bse3DI	GCAATG	1 cut(s)	741
BseBI	CCWGG	2 cut(s)	638, 826
BseDI	CCNNGG	3 cut(s)	232, 331, 636
BseGI	GGATG	2 cut(s)	486, 863
BseLI	CCNNNNNNNGG	3 cut(s)	45, 386, 419
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	1 cut(s)	226
BseX3I	CGGCCG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	801
Bsh1236I	CGCG	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	5 cut(s)	5, 231, 237, 313, 412
BshNI	GGYRCC	2 cut(s)	138, 459
BshTI	ACCGGT	1 cut(s)	705
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	5 cut(s)	94, 228, 234, 457, 706
BslFI	GGGAC	2 cut(s)	251, 619
BslI	CCNNNNNNNGG	3 cut(s)	45, 386, 419
BsmAI	GTCTC	2 cut(s)	14, 223
BsmFI	GGGAC	2 cut(s)	251, 619
BsnI	GGCC	5 cut(s)	5, 231, 237, 313, 412
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	2 cut(s)	48, 254
BspACI	CCGC	4 cut(s)	172, 238, 390, 725
BspANI	GGCC	5 cut(s)	5, 231, 237, 313, 412
BspCNI	CTCAG	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	4 cut(s)	140, 232, 461, 676
BspPI	GGATC	2 cut(s)	56, 262
BspQI	GCTCTTC	1 cut(s)	660
BspT107I	GGYRCC	2 cut(s)	138, 459
BspTI	CTTAAG	2 cut(s)	593, 848
BsrDI	GCAATG	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	705
BssAI	RCCGGY	1 cut(s)	705
BssECI	CCNNGG	3 cut(s)	232, 331, 636
BssMI	GATC	2 cut(s)	48, 254
BssNI	GRCGYC	2 cut(s)	176, 822
BssT1I	CCWWGG	1 cut(s)	331
Bst2UI	CCWGG	2 cut(s)	638, 826
Bst4CI	ACNGT	1 cut(s)	976
Bst6I	CTCTTC	1 cut(s)	660
BstACI	GRCGYC	2 cut(s)	176, 822
BstAFI	CTTAAG	2 cut(s)	593, 848
BstC8I	GCNNGC	5 cut(s)	174, 202, 414, 473, 930
BstDEI	CTNAG	2 cut(s)	212, 659
BstF5I	GGATG	2 cut(s)	486, 863
BstFNI	CGCG	1 cut(s)	172
BstKTI	GATC	2 cut(s)	51, 257
BstMAI	GTCTC	2 cut(s)	14, 223
BstMBI	GATC	2 cut(s)	48, 254
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 468, 539, 844
BstNI	CCWGG	2 cut(s)	638, 826
BstNSI	RCATGY	5 cut(s)	266, 475, 580, 634, 932
BstPAI	GACNNNNGTC	1 cut(s)	800
BstSCI	CCNGG	3 cut(s)	232, 636, 824
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	801
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
BstZI	CGGCCG	1 cut(s)	235
BsuRI	GGCC	5 cut(s)	5, 231, 237, 313, 412
BtrI	CACGTC	1 cut(s)	898
BtsCI	GGATG	2 cut(s)	486, 863
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	5 cut(s)	174, 202, 414, 473, 930
CciI	TCATGA	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	705
Cfr13I	GGNCC	2 cut(s)	62, 230
CseI	GACGC	2 cut(s)	165, 830
Csp6I	GTAC	5 cut(s)	139, 291, 736, 832, 868
CspAI	ACCGGT	1 cut(s)	705
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	8 cut(s)	263, 275, 472, 491, 577, 631, 649, 929
CviQI	GTAC	5 cut(s)	139, 291, 736, 832, 868
DdeI	CTNAG	2 cut(s)	212, 659
DpnI	GATC	2 cut(s)	50, 256
DpnII	GATC	2 cut(s)	48, 254
DraI	TTTAAA	1 cut(s)	384
EaeI	YGGCCR	2 cut(s)	3, 235
EagI	CGGCCG	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	533
EclXI	CGGCCG	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	62
Eco52I	CGGCCG	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	533
EcoICRI	GAGCTC	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	636, 824
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	8 cut(s)	266, 278, 475, 494, 580, 634, 652, 932
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	2 cut(s)	251, 619
FatI	CATG	8 cut(s)	262, 274, 471, 490, 576, 630, 648, 928
FauI	CCCGC	2 cut(s)	165, 383
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	3 cut(s)	238, 726, 815
FokI	GGATG	2 cut(s)	473, 870
FriOI	GRGCYC	1 cut(s)	535
Fsp4HI	GCNGC	3 cut(s)	238, 726, 815
FspBI	CTAG	3 cut(s)	222, 399, 719
GluI	GCNGC	3 cut(s)	238, 726, 815
HaeIII	GGCC	5 cut(s)	5, 231, 237, 313, 412
HapII	CCGG	5 cut(s)	94, 228, 234, 457, 706
HgaI	GACGC	2 cut(s)	165, 830
Hin1I	GRCGYC	2 cut(s)	176, 822
Hin1II	CATG	8 cut(s)	266, 278, 475, 494, 580, 634, 652, 932
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	845
HinfI	GANTC	7 cut(s)	8, 102, 133, 216, 320, 605, 641
HpaII	CCGG	5 cut(s)	94, 228, 234, 457, 706
Hpy166II	GTNNAC	2 cut(s)	441, 628
Hpy188I	TCNGA	4 cut(s)	62, 85, 101, 215
Hpy188III	TCNNGA	9 cut(s)	30, 52, 106, 161, 275, 362, 587, 697, 962
Hpy8I	GTNNAC	2 cut(s)	441, 628
Hpy99I	CGWCG	3 cut(s)	172, 181, 799
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	976
HpyCH4IV	ACGT	1 cut(s)	897
HpyCH4V	TGCA	6 cut(s)	430, 554, 648, 746, 817, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 468, 539, 844
HpyF3I	CTNAG	2 cut(s)	212, 659
HpySE526I	ACGT	1 cut(s)	897
Hsp92I	GRCGYC	2 cut(s)	176, 822
Hsp92II	CATG	8 cut(s)	266, 278, 475, 494, 580, 634, 652, 932
KpnI	GGTACC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	48, 254
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	1 cut(s)	801
LweI	GCATC	4 cut(s)	417, 495, 748, 848
MaeI	CTAG	3 cut(s)	222, 399, 719
MaeII	ACGT	1 cut(s)	897
MaeIII	GTNAC	4 cut(s)	499, 584, 662, 914
MalI	GATC	2 cut(s)	50, 256
MboI	GATC	2 cut(s)	48, 254
MboII	GAAGA	8 cut(s)	142, 249, 311, 382, 647, 701, 794, 917
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	3 cut(s)	109, 543, 941
MlyI	GAGTC	2 cut(s)	225, 614
MmeI	TCCRAC	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	957
MseI	TTAA	7 cut(s)	383, 527, 594, 681, 752, 789, 849
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	838
MspCI	CTTAAG	2 cut(s)	593, 848
MspI	CCGG	5 cut(s)	94, 228, 234, 457, 706
MspR9I	CCNGG	3 cut(s)	234, 638, 826
MvaI	CCWGG	2 cut(s)	638, 826
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	4 cut(s)	237, 468, 539, 844
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	2 cut(s)	48, 254
NlaIII	CATG	8 cut(s)	266, 278, 475, 494, 580, 634, 652, 932
NlaIV	GGNNCC	4 cut(s)	140, 232, 461, 676
NmuCI	GTSAC	1 cut(s)	584
NspI	RCATGY	5 cut(s)	266, 475, 580, 634, 932
PaeI	GCATGC	2 cut(s)	475, 932
PagI	TCATGA	1 cut(s)	274
PciI	ACATGT	2 cut(s)	262, 630
PciSI	GCTCTTC	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	5 cut(s)	8, 102, 133, 320, 641
PflFI	GACNNNGTC	1 cut(s)	305
PinAI	ACCGGT	1 cut(s)	705
PkrI	GCNGC	3 cut(s)	239, 727, 816
PleI	GAGTC	2 cut(s)	224, 613
PpsI	GAGTC	2 cut(s)	224, 613
PscI	ACATGT	2 cut(s)	262, 630
PshAI	GACNNNNGTC	1 cut(s)	800
Psp124BI	GAGCTC	1 cut(s)	535
Psp6I	CCWGG	2 cut(s)	636, 824
PspGI	CCWGG	2 cut(s)	636, 824
PspN4I	GGNNCC	4 cut(s)	140, 232, 461, 676
PspPI	GGNCC	2 cut(s)	62, 230
PsuI	RGATCY	1 cut(s)	254
PsyI	GACNNNGTC	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	838
RsaI	GTAC	5 cut(s)	140, 292, 737, 833, 869
RsaNI	GTAC	5 cut(s)	139, 291, 736, 832, 868
RseI	CAYNNNNRTG	1 cut(s)	495
SacI	GAGCTC	1 cut(s)	535
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	7 cut(s)	383, 527, 594, 681, 752, 789, 849
SatI	GCNGC	3 cut(s)	238, 726, 815
Sau3AI	GATC	2 cut(s)	48, 254
Sau96I	GGNCC	2 cut(s)	62, 230
SchI	GAGTC	2 cut(s)	225, 614
ScrFI	CCNGG	3 cut(s)	234, 638, 826
SduI	GDGCHC	1 cut(s)	535
SfaNI	GCATC	4 cut(s)	417, 495, 748, 848
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	3 cut(s)	593, 806, 848
SmoI	CTYRAG	3 cut(s)	593, 806, 848
SphI	GCATGC	2 cut(s)	475, 932
Sse9I	AATT	3 cut(s)	109, 543, 941
SsiI	CCGC	4 cut(s)	172, 238, 390, 725
SspMI	CTAG	3 cut(s)	222, 399, 719
SstI	GAGCTC	1 cut(s)	535
StyD4I	CCNGG	3 cut(s)	232, 636, 824
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	976
TaiI	ACGT	1 cut(s)	900
TaqI	TCGA	4 cut(s)	51, 122, 179, 794
TaqII	GACCGA	1 cut(s)	951
TasI	AATT	3 cut(s)	109, 543, 941
TatI	WGTACW	1 cut(s)	867
TauI	GCSGC	2 cut(s)	240, 728
TfiI	GAWTC	5 cut(s)	8, 102, 133, 320, 641
Tru1I	TTAA	7 cut(s)	383, 527, 594, 681, 752, 789, 849
Tru9I	TTAA	7 cut(s)	383, 527, 594, 681, 752, 789, 849
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	1 cut(s)	814
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	3 cut(s)	263, 291, 331
TspGWI	ACGGA	2 cut(s)	424, 965
TspRI	CASTG	1 cut(s)	517
Tth111I	GACNNNGTC	1 cut(s)	305
Vha464I	CTTAAG	2 cut(s)	593, 848
VpaK11BI	GGWCC	1 cut(s)	62
XceI	RCATGY	5 cut(s)	266, 475, 580, 634, 932
XmiI	GTMKAC	1 cut(s)	627
XmnI	GAANNNNTTC	1 cut(s)	957
XspI	CTAG	3 cut(s)	222, 399, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.