AT1G21880

lysM domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013375
Physical Location & Seq
Forward (+)
7680390 .. 7682641
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21880.1

Sequence Viewer

Length: 951 bp
ATGAAAATCCCAGAAAAACCCATCTTCTTAATCTTCGTCTCTTTGATCCTAGCTTCGAGCTTAACCTTCACAGCGACAGCGAAATCAACAATCGAGCCTTGCTCAAGCAACGACACTTGCAACGCTTTACTCGGCTACACACTCTACACCGACCTCAAAGTCTCAGAAGTCGCATCTCTCTTCCAAGTAGACCCAATCTCTATCCTTTTAGCTAACGCCATCGATATCTCTTACCCAGACGTCGAAAACCATATCCTTCCTTCGAAGCTCTTCCTCAAAATCCCAATCACTTGCTCCTGCGTCGACGGAATCAGAAAATCTGTCTCTACCCATTACAAAACCCGACCTTCTGACAATCTAGGATCGATTGCTGACTCTGTTTACGGAGGCTTGGTCTCTGCTGAGCAGATCCAGGAAGCTAACTCGGTGAATGACCCGTCGCTGCTTGATGTTGGGACTAGTCTTGTTATCCCCTTGCCTTGTGCTTGTTTCAATGGCACCGACAATTCTTTGCCGGCTGTTTATTTGTCGTATGTTGTGAAGGAGATTGATACATTGGTCGGAATCGCGAGGAGGTATTCGACTACTATTACTGATTTGATGAATGTGAATGCTATGGGAGCTCCTGATGTTAGTTCTGGAGATATTCTCGCTGTTCCTTTGTCAGCTTGTGCTTCAAAGTTCCCCAGATACGCTTCGGATTTCGGATTGATTGTTCCAAATGGTAGCTATGCTCTAGCTGCAGGTCACTGTGTGCAATGCAGCTGTGCGCTTGGGAGCCGCAATTTGTATTGTGAGCCTGCTTCCCTAGCCGTCTCTTGCTCAAGTATGCAGTGTAGAAACAGCAACCTCATGCTCGGTAACATCACGGTGCAGCAGACTAGCGCTGGCTGTAATGTTACAACTTGTGATTACAACGGTATAGCCAACGGCACTATCTTAACCATGTAA

Protein Analysis

316

Amino Acids

33.4

Weight (kDa)

4.79

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM2_CERK1_LYK3_4_5 PF23472 110 - 159 2.1e-06 LYK3/4/5 LysM2 domain
LysM PF01476 112 - 158 1e-06 LysM domain
LysM PF01476 178 - 220 5.1e-09 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21880 AT1G21880
fragaria_vesca FvH4_2g26750
malus_domestica MD08G1165500.v1.1 MD15G1351200.v1.1
prunus_persica Prupe.1G500000_v2.0.a1
pyrus_communis pycom12654g00100
rosa_chinensis RchiOBHm_Chr6g0295631
rosa_laevigata RLG00000011781
rosa_multiflora Rmu_sc0005000.1_g000002 Rmu_sc0006802.1_g000011
rosa_roxburghii Rroxscaffold_7G00172300
rosa_rugosa Rorug06G0253000
rosa_samantha Rh6AG366000 Rh6BG374100 Rh6CG380400 Rh6DG367200
rosa_wichuraiana Rw6G031940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AatII GACGTC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 734
AccB1I GGYRCC 1 cut(s) 497
AccI GTMKAC 2 cut(s) 189, 303
AccII CGCG 1 cut(s) 569
AciI CCGC 1 cut(s) 781
AclWI GGATC 3 cut(s) 40, 370, 403
AcyI GRCGYC 1 cut(s) 240
AdeI CACNNNGTG 1 cut(s) 754
AfeI AGCGCT 1 cut(s) 886
AgsI TTSAA 2 cut(s) 493, 678
AhlI ACTAGT 1 cut(s) 458
AjnI CCWGG 1 cut(s) 411
AloI GAACNNNNNNTCC 2 cut(s) 699, 731
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 5 cut(s) 43, 166, 328, 400, 820
AlwI GGATC 3 cut(s) 40, 370, 403
Aor51HI AGCGCT 1 cut(s) 886
ApeKI GCWGC 4 cut(s) 442, 740, 762, 874
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 2 cut(s) 772, 887
AsuHPI GGTGA 1 cut(s) 439
AsuII TTCGAA 1 cut(s) 263
BaeI ACNNNNGTAYC 2 cut(s) 543, 576
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 1 cut(s) 625
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 4 cut(s) 429, 727, 774, 886
BccI CCATC 2 cut(s) 29, 227
BceAI ACGGC 2 cut(s) 797, 946
BciT130I CCWGG 1 cut(s) 413
BcoDI GTCTC 5 cut(s) 43, 166, 328, 400, 820
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 6 cut(s) 50, 359, 459, 737, 809, 882
BfmI CTRYAG 1 cut(s) 741
BfoI RGCGCY 1 cut(s) 888
BfuAI ACCTGC 1 cut(s) 734
BisI GCNGC 5 cut(s) 443, 741, 763, 781, 875
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 5 cut(s) 444, 742, 764, 782, 876
Bme1390I CCNGG 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 499, 779
BmrFI CCNGG 1 cut(s) 413
BmsI GCATC 1 cut(s) 182
BplI GAGNNNNNCTC 4 cut(s) 86, 118, 633, 665
BpmI CTGGAG 1 cut(s) 660
Bpu1102I GCTNAGC 1 cut(s) 402
Bpu14I TTCGAA 1 cut(s) 263
BpuEI CTTGAG 2 cut(s) 88, 808
Bsa29I ATCGAT 2 cut(s) 222, 365
BsaHI GRCGYC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bse118I RCCGGY 1 cut(s) 514
Bse3DI GCAATG 1 cut(s) 764
BseBI CCWGG 1 cut(s) 413
BseCI ATCGAT 2 cut(s) 222, 365
BseMI GCAATG 1 cut(s) 764
BseMII CTCAG 2 cut(s) 177, 393
BseRI GAGGAG 1 cut(s) 586
BseXI GCAGC 4 cut(s) 429, 727, 774, 886
BsgI GTGCAG 1 cut(s) 893
Bsh1236I CGCG 1 cut(s) 569
BshNI GGYRCC 1 cut(s) 497
BshVI ATCGAT 2 cut(s) 222, 365
BsiHKAI GWGCWC 1 cut(s) 625
BsiSI CCGG 1 cut(s) 515
BslFI GGGAC 1 cut(s) 469
BsmAI GTCTC 5 cut(s) 43, 166, 328, 400, 820
BsmBI CGTCTC 2 cut(s) 43, 820
BsmFI GGGAC 1 cut(s) 469
BsmI GAATGC 1 cut(s) 616
Bso31I GGTCTC 1 cut(s) 400
Bsp119I TTCGAA 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 3 cut(s) 45, 362, 408
Bsp1720I GCTNAGC 1 cut(s) 402
Bsp68I TCGCGA 1 cut(s) 569
BspACI CCGC 1 cut(s) 781
BspCNI CTCAG 2 cut(s) 176, 394
BspDI ATCGAT 2 cut(s) 222, 365
BspFNI CGCG 1 cut(s) 569
BspLI GGNNCC 2 cut(s) 499, 779
BspMAI CTGCAG 1 cut(s) 745
BspMI ACCTGC 1 cut(s) 734
BspPI GGATC 3 cut(s) 40, 370, 403
BspQI GCTCTTC 1 cut(s) 275
BspT104I TTCGAA 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 497
BspTNI GGTCTC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 764
BsrFI RCCGGY 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 514
BssMI GATC 3 cut(s) 45, 362, 408
BssNI GRCGYC 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 3 cut(s) 752, 871, 920
Bst6I CTCTTC 2 cut(s) 185, 275
BstACI GRCGYC 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 263
BstC8I GCNNGC 3 cut(s) 516, 801, 889
BstDEI CTNAG 2 cut(s) 163, 402
BstFNI CGCG 1 cut(s) 569
BstH2I RGCGCY 1 cut(s) 888
BstHHI GCGC 2 cut(s) 772, 887
BstKTI GATC 3 cut(s) 48, 365, 411
BstMAI GTCTC 5 cut(s) 43, 166, 328, 400, 820
BstMBI GATC 3 cut(s) 45, 362, 408
BstMWI GCNNNNNNNGC 3 cut(s) 620, 740, 809
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 741
BstUI CGCG 1 cut(s) 569
BstV1I GCAGC 4 cut(s) 429, 727, 774, 886
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
Bsu15I ATCGAT 2 cut(s) 222, 365
BsuTUI ATCGAT 2 cut(s) 222, 365
BtsI GCAGTG 1 cut(s) 839
BtsIMutI CAGTG 2 cut(s) 748, 839
BtuMI TCGCGA 1 cut(s) 569
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 3 cut(s) 516, 801, 889
CfoI GCGC 2 cut(s) 772, 887
Cfr10I RCCGGY 1 cut(s) 514
ClaI ATCGAT 2 cut(s) 222, 365
CseI GACGC 1 cut(s) 289
CviAII CATG 2 cut(s) 853, 946
DdeI CTNAG 2 cut(s) 163, 402
DpnI GATC 3 cut(s) 47, 364, 410
DpnII GATC 3 cut(s) 45, 362, 408
DraIII CACNNNGTG 1 cut(s) 754
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 2 cut(s) 185, 275
EarI CTCTTC 2 cut(s) 185, 275
Ecl136II GAGCTC 1 cut(s) 623
Eco24I GRGCYC 1 cut(s) 625
Eco31I GGTCTC 1 cut(s) 400
Eco32I GATATC 1 cut(s) 226
Eco47III AGCGCT 1 cut(s) 886
Eco53kI GAGCTC 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 411
EcoRV GATATC 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 625
Esp3I CGTCTC 2 cut(s) 43, 820
FaeI CATG 2 cut(s) 856, 949
FaiI YATR 8 cut(s) 252, 534, 617, 732, 830, 854, 923, 947
FaqI GGGAC 1 cut(s) 469
FatI CATG 2 cut(s) 852, 945
FblI GTMKAC 2 cut(s) 189, 303
Fnu4HI GCNGC 5 cut(s) 443, 741, 763, 781, 875
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 5 cut(s) 443, 741, 763, 781, 875
FspBI CTAG 6 cut(s) 50, 359, 459, 737, 809, 882
GlaI GCGC 2 cut(s) 771, 886
GluI GCNGC 5 cut(s) 443, 741, 763, 781, 875
GsuI CTGGAG 1 cut(s) 660
HaeII RGCGCY 1 cut(s) 888
HapII CCGG 1 cut(s) 515
HgaI GACGC 1 cut(s) 289
HhaI GCGC 2 cut(s) 772, 887
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 2 cut(s) 856, 949
Hin6I GCGC 2 cut(s) 770, 885
HinP1I GCGC 2 cut(s) 770, 885
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 3 cut(s) 309, 374, 564
HpaII CCGG 1 cut(s) 515
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 3 cut(s) 190, 304, 382
Hpy188I TCNGA 6 cut(s) 166, 314, 352, 563, 700, 707
Hpy188III TCNNGA 3 cut(s) 568, 626, 639
Hpy8I GTNNAC 3 cut(s) 190, 304, 382
Hpy99I CGWCG 4 cut(s) 245, 305, 308, 442
HpyAV CCTTC 5 cut(s) 76, 266, 270, 357, 535
HpyCH4III ACNGT 3 cut(s) 752, 871, 920
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 6 cut(s) 120, 743, 757, 762, 832, 874
HpyF10VI GCNNNNNNNGC 3 cut(s) 620, 740, 809
HpyF3I CTNAG 2 cut(s) 163, 402
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 856, 949
HspAI GCGC 2 cut(s) 770, 885
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
Kzo9I GATC 3 cut(s) 45, 362, 408
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 4 cut(s) 299, 620, 628, 777
Lsp1109I GCAGC 4 cut(s) 429, 727, 774, 886
LweI GCATC 1 cut(s) 182
MaeI CTAG 6 cut(s) 50, 359, 459, 737, 809, 882
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 3 cut(s) 746, 860, 898
MalI GATC 3 cut(s) 47, 364, 410
MboI GATC 3 cut(s) 45, 362, 408
MboII GAAGA 4 cut(s) 16, 25, 172, 262
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 2 cut(s) 505, 784
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 6 cut(s) 164, 284, 380, 564, 567, 860
MroNI GCCGGC 1 cut(s) 514
MroXI GAANNNNTTC 1 cut(s) 269
MseI TTAA 3 cut(s) 29, 62, 941
MslI CAYNNNNRTG 1 cut(s) 869
MspA1I CMGCKG 1 cut(s) 765
MspI CCGG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 3 cut(s) 620, 740, 809
NaeI GCCGGC 1 cut(s) 516
NdeII GATC 3 cut(s) 45, 362, 408
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 2 cut(s) 856, 949
NlaIV GGNNCC 2 cut(s) 499, 779
NmeAIII GCCGAG 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 746
NruI TCGCGA 1 cut(s) 569
NspV TTCGAA 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 275
PctI GAATGC 1 cut(s) 616
PdiI GCCGGC 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 309, 564
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 5 cut(s) 444, 742, 764, 782, 876
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 625
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 2 cut(s) 499, 779
PstI CTGCAG 1 cut(s) 745
PsuI RGATCY 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 765
RruI TCGCGA 1 cut(s) 569
RseI CAYNNNNRTG 1 cut(s) 869
SacI GAGCTC 1 cut(s) 625
SalI GTCGAC 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 3 cut(s) 29, 62, 941
SatI GCNGC 5 cut(s) 443, 741, 763, 781, 875
Sau3AI GATC 3 cut(s) 45, 362, 408
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 1 cut(s) 182
SfcI CTRYAG 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 263
SgrDI CGTCGACG 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 869
SmlI CTYRAG 2 cut(s) 103, 823
SmoI CTYRAG 2 cut(s) 103, 823
SpeI ACTAGT 1 cut(s) 458
Sse9I AATT 2 cut(s) 505, 784
SsiI CCGC 1 cut(s) 781
SspMI CTAG 6 cut(s) 50, 359, 459, 737, 809, 882
SstI GAGCTC 1 cut(s) 625
StyD4I CCNGG 1 cut(s) 411
TaaI ACNGT 3 cut(s) 752, 871, 920
TaiI ACGT 1 cut(s) 243
TaqI TCGA 8 cut(s) 56, 93, 222, 243, 263, 303, 365, 581
TasI AATT 2 cut(s) 505, 784
TauI GCSGC 1 cut(s) 783
TfiI GAWTC 2 cut(s) 309, 564
Tru1I TTAA 3 cut(s) 29, 62, 941
Tru9I TTAA 3 cut(s) 29, 62, 941
TscAI CASTG 2 cut(s) 755, 839
TseFI GTSAC 1 cut(s) 746
TseI GCWGC 4 cut(s) 442, 740, 762, 874
Tsp45I GTSAC 1 cut(s) 746
TspDTI ATGAA 2 cut(s) 17, 617
TspGWI ACGGA 2 cut(s) 321, 399
TspRI CASTG 2 cut(s) 755, 839
XmiI GTMKAC 2 cut(s) 189, 303
XmnI GAANNNNTTC 1 cut(s) 269
XspI CTAG 6 cut(s) 50, 359, 459, 737, 809, 882
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.