MD15G1351200.v1.1

lysM domain-containing GPI-anchored protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
41735586 .. 41739213
3628 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1351200.v1.1.491

Sequence Viewer

Length: 1263 bp
ATGGCGATTCAAAAACCCTTTTCCAAAACCCAAATCTTCCTTTTTCTGATAGTTCTAGTCAATGTGGCTGTTTTCGTCACCTCCAAGTCGACAATCGAGCCCTGCTCGAACGCCGACTTGTGCAACGCCTTGCTCGGGTACACTGTCTACACCGAGCTAAAGGTCTCGGAGGTCGCCTTCCTCTTCCAGATCGACCCAATTGCTCTCCTCACCGCCAATGCCATCGACATTTCGTACCCAGACGTCGAAAACCACATCCTCCCGTCCCAGCTCTTCCTCAAAGTCCCAATCACCTGCTCCTGCGTCGACGGGATTCGAAAATCGGTGTCTACCCACTACAAGACCCGGCCTTCCGACACTCTGGCCTCCATTGCCGATTCGGTGTACTCCGGCTTGGTCTCGGCGGACCAGATTAGGGAGGCCAATTCGATTTCGGACCCTTCGGTGCTCGACGTGGGGCAGACCCTTGTGGTGCCTCTGCCCTGCACTTGCTTCAATGGGACTGATAATCTACTGCCTGCTATCTACTTGTCCTACGTGGTGAGCCCGGAGGACACGCTGGCAGGGATCGCAGCGCGGTACTCGACTACACTGACCGATTTGATGAATGTGAATGCCATGGGGAGTACTGCTATTAAGGCTGCTGATATACTTGCAATCCCATTGCCAGCCTGTGCATCAAACTTTCCTAAATATGCTCAAGATTACGGCTTGATGGTGCCCAATGGTAGCTATGCCATTACAGCAAGTCACTGTTTACAATGCAGTTGTGGGCCTGGGAGTCTCAATTTGTACTGCCAGCCTGCTTCATTAGCAGTTTCATGTTCGAGCATGCAATGTAAGAAAAGTAACCTCATAGTCGGGAATGTTACAGTTCAGCAGAGTGGTGGTGGTTGCAATGTCACTTCTTGTAACTATGGTGGTTTTGTGAATGGCAGCATCATCACAACATTGTCTTCATCTCTTCAGCCCCGTTGCCCAGGTCCACAGAAATTTCCACCACTTAAAGCCCCGCCTACCTCGGTAATCCATGACACAATGTTTGCACCTGCACCTGCACCTGCACCCCAGTCAGATGGTTCTATTGGAGGGATACCCAAGTCGCCTTCAGTGTACCCCGGAGTGCATCCAGCAGGATTATCCCCTATAGGTGGCCCTGCTGGGAGTGCTTCTGATGCCTGCTCGTTGATCAATCCATTGGCCAATCTCCCAACCGCCGTTCTGCTACTTTTGTATGTCAAGTTGATGATGGTCATCTTATAA

Protein Analysis

421

Amino Acids

43.85

Weight (kDa)

5.69

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM2_CERK1_LYK3_4_5 PF23472 111 - 160 5.6e-08 LYK3/4/5 LysM2 domain
LysM PF01476 113 - 159 2.1e-09 LysM domain
LysM PF01476 179 - 221 6.4e-08 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013375)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1261
AarI CACCTGC 4 cut(s) 302, 1057, 1063, 1069
AatII GACGTC 1 cut(s) 246
Acc36I ACCTGC 4 cut(s) 302, 1057, 1063, 1069
AccB1I GGYRCC 2 cut(s) 472, 718
AccI GTMKAC 4 cut(s) 89, 147, 306, 329
AccII CGCG 1 cut(s) 577
AciI CCGC 5 cut(s) 213, 404, 577, 1013, 1215
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 1 cut(s) 1200
AcsI RAATTY 1 cut(s) 992
AcuI CTGAAG 2 cut(s) 950, 1092
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 7 cut(s) 140, 236, 386, 581, 628, 794, 1115
AfiI CCNNNNNNNGG 3 cut(s) 135, 415, 1151
AgsI TTSAA 2 cut(s) 11, 496
AjiI CACGTC 1 cut(s) 454
AjnI CCWGG 2 cut(s) 775, 979
AluBI AGCT 3 cut(s) 157, 271, 732
AluI AGCT 3 cut(s) 157, 271, 732
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 3 cut(s) 169, 403, 788
AlwI GGATC 1 cut(s) 575
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 6 cut(s) 347, 363, 420, 773, 1153, 1200
ApeKI GCWGC 3 cut(s) 572, 641, 936
ApoI RAATTY 1 cut(s) 992
ArsI GACNNNNNNTTYG 2 cut(s) 1025, 1057
AspLEI GCGC 1 cut(s) 577
AspS9I GGNCC 5 cut(s) 406, 436, 773, 983, 1154
AsuC2I CCSGG 3 cut(s) 346, 548, 1119
AsuHPI GGTGA 4 cut(s) 70, 202, 283, 553
AsuII TTCGAA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 3 cut(s) 406, 436, 983
BaeGI GKGCMC 1 cut(s) 723
BaeI ACNNNNGTAYC 2 cut(s) 1085, 1118
BalI TGGCCA 1 cut(s) 1202
BanI GGYRCC 2 cut(s) 472, 718
BanII GRGCYC 2 cut(s) 102, 548
BbsI GAAGAC 1 cut(s) 948
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 3 cut(s) 584, 628, 948
BccI CCATC 4 cut(s) 230, 709, 1070, 1243
BceAI ACGGC 2 cut(s) 724, 1202
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 2 cut(s) 777, 981
BciVI GTATCC 1 cut(s) 1086
BclI TGATCA 1 cut(s) 1188
BcnI CCSGG 3 cut(s) 346, 548, 1119
BcoDI GTCTC 3 cut(s) 169, 403, 788
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 1146
BfuAI ACCTGC 4 cut(s) 302, 1057, 1063, 1069
BfuI GTATCC 1 cut(s) 1086
BisI GCNGC 3 cut(s) 573, 642, 937
BlsI GCNGC 3 cut(s) 574, 643, 938
BmcAI AGTACT 1 cut(s) 628
Bme1390I CCNGG 5 cut(s) 346, 548, 777, 981, 1119
Bme18I GGWCC 3 cut(s) 406, 436, 983
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 454
BmgT120I GGNCC 5 cut(s) 406, 436, 773, 983, 1154
BmiI GGNNCC 3 cut(s) 438, 474, 720
BmrFI CCNGG 5 cut(s) 346, 548, 777, 981, 1119
BmrI ACTGGG 1 cut(s) 1063
BmsI GCATC 4 cut(s) 686, 948, 1135, 1165
BmuI ACTGGG 1 cut(s) 1063
BpiI GAAGAC 1 cut(s) 948
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu14I TTCGAA 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 684
BpuMI CCSGG 3 cut(s) 346, 548, 1119
BsaAI YACGTR 1 cut(s) 538
BsaBI GATNNNNATC 1 cut(s) 1253
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 2 cut(s) 169, 403
BsaJI CCNNGG 5 cut(s) 618, 776, 979, 1020, 1117
Bsc4I CCNNNNNNNGG 3 cut(s) 135, 415, 1151
Bse1I ACTGG 1 cut(s) 1069
Bse3DI GCAATG 4 cut(s) 369, 662, 842, 904
Bse8I GATNNNNATC 1 cut(s) 1253
BseBI CCWGG 2 cut(s) 777, 981
BseDI CCNNGG 5 cut(s) 618, 776, 979, 1020, 1117
BseGI GGATG 2 cut(s) 255, 1126
BseJI GATNNNNATC 1 cut(s) 1253
BseLI CCNNNNNNNGG 3 cut(s) 135, 415, 1151
BseMI GCAATG 4 cut(s) 369, 662, 842, 904
BseNI ACTGG 1 cut(s) 1069
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 723
BseXI GCAGC 3 cut(s) 584, 628, 948
BseYI CCCAGC 2 cut(s) 267, 1160
BsgI GTGCAG 4 cut(s) 469, 1035, 1041, 1047
Bsh1236I CGCG 1 cut(s) 577
BshFI GGCC 6 cut(s) 349, 365, 422, 775, 1155, 1202
BshNI GGYRCC 2 cut(s) 472, 718
BsiHKAI GWGCWC 1 cut(s) 450
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 4 cut(s) 346, 390, 548, 1119
BslFI GGGAC 3 cut(s) 250, 269, 514
BslI CCNNNNNNNGG 3 cut(s) 135, 415, 1151
BsmAI GTCTC 3 cut(s) 169, 403, 788
BsmFI GGGAC 3 cut(s) 250, 269, 514
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 6 cut(s) 349, 365, 422, 775, 1155, 1202
Bso31I GGTCTC 2 cut(s) 169, 403
BsoBI CYCGRG 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 316
Bsp1286I GDGCHC 4 cut(s) 102, 450, 548, 723
Bsp143I GATC 3 cut(s) 189, 567, 1188
Bsp19I CCATGG 1 cut(s) 618
BspACI CCGC 5 cut(s) 213, 404, 577, 1013, 1215
BspANI GGCC 6 cut(s) 349, 365, 422, 775, 1155, 1202
BspFNI CGCG 1 cut(s) 577
BspLI GGNNCC 3 cut(s) 438, 474, 720
BspMI ACCTGC 4 cut(s) 302, 1057, 1063, 1069
BspPI GGATC 1 cut(s) 575
BspQI GCTCTTC 1 cut(s) 278
BspT104I TTCGAA 1 cut(s) 316
BspT107I GGYRCC 2 cut(s) 472, 718
BspTNI GGTCTC 2 cut(s) 169, 403
BsrDI GCAATG 4 cut(s) 369, 662, 842, 904
BsrI ACTGG 1 cut(s) 1069
BssECI CCNNGG 5 cut(s) 618, 776, 979, 1020, 1117
BssMI GATC 3 cut(s) 189, 567, 1188
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 618
Bst2UI CCWGG 2 cut(s) 777, 981
Bst4CI ACNGT 3 cut(s) 145, 755, 874
Bst6I CTCTTC 3 cut(s) 188, 278, 969
BstACI GRCGYC 1 cut(s) 243
BstBAI YACGTR 1 cut(s) 538
BstBI TTCGAA 1 cut(s) 316
BstC8I GCNNGC 7 cut(s) 519, 561, 669, 800, 804, 833, 1180
BstDSI CCRYGG 1 cut(s) 618
BstF5I GGATG 2 cut(s) 255, 1126
BstFNI CGCG 1 cut(s) 577
BstHHI GCGC 1 cut(s) 577
BstKTI GATC 3 cut(s) 192, 570, 1191
BstMAI GTCTC 3 cut(s) 169, 403, 788
BstMBI GATC 3 cut(s) 189, 567, 1188
BstMWI GCNNNNNNNGC 7 cut(s) 371, 569, 638, 743, 812, 1166, 1175
BstNI CCWGG 2 cut(s) 777, 981
BstNSI RCATGY 1 cut(s) 835
BstSCI CCNGG 5 cut(s) 344, 546, 775, 979, 1117
BstSFI CTRYAG 1 cut(s) 1146
BstSLI GKGCMC 1 cut(s) 723
BstUI CGCG 1 cut(s) 577
BstV1I GCAGC 3 cut(s) 584, 628, 948
BstV2I GAAGAC 1 cut(s) 948
BstXI CCANNNNNNTGG 1 cut(s) 1076
BsuI GTATCC 1 cut(s) 1086
BsuRI GGCC 6 cut(s) 349, 365, 422, 775, 1155, 1202
BtgI CCRYGG 1 cut(s) 618
BtrI CACGTC 1 cut(s) 454
BtsCI GGATG 2 cut(s) 255, 1126
BtsIMutI CAGTG 4 cut(s) 141, 590, 751, 1116
BveI ACCTGC 4 cut(s) 302, 1057, 1063, 1069
Cac8I GCNNGC 7 cut(s) 519, 561, 669, 800, 804, 833, 1180
CfoI GCGC 1 cut(s) 577
Cfr13I GGNCC 5 cut(s) 406, 436, 773, 983, 1154
CseI GACGC 1 cut(s) 292
Csp6I GTAC 7 cut(s) 139, 235, 385, 580, 627, 793, 1114
CviAII CATG 4 cut(s) 619, 822, 832, 1031
CviQI GTAC 7 cut(s) 139, 235, 385, 580, 627, 793, 1114
DpnI GATC 3 cut(s) 191, 569, 1190
DpnII GATC 3 cut(s) 189, 567, 1188
EaeI YGGCCR 1 cut(s) 1200
Eam1104I CTCTTC 3 cut(s) 188, 278, 969
EarI CTCTTC 3 cut(s) 188, 278, 969
EciI GGCGGA 1 cut(s) 419
Eco130I CCWWGG 1 cut(s) 618
Eco24I GRGCYC 2 cut(s) 102, 548
Eco31I GGTCTC 2 cut(s) 169, 403
Eco47I GGWCC 3 cut(s) 406, 436, 983
Eco57I CTGAAG 2 cut(s) 950, 1092
Eco88I CYCGRG 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 775, 979
EcoT14I CCWWGG 1 cut(s) 618
EcoT38I GRGCYC 2 cut(s) 102, 548
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 4 cut(s) 622, 825, 835, 1034
FaqI GGGAC 3 cut(s) 250, 269, 514
FatI CATG 4 cut(s) 618, 821, 831, 1030
FauI CCCGC 1 cut(s) 1020
FbaI TGATCA 1 cut(s) 1188
FblI GTMKAC 4 cut(s) 89, 147, 306, 329
Fnu4HI GCNGC 3 cut(s) 573, 642, 937
FokI GGATG 2 cut(s) 242, 1113
FriOI GRGCYC 2 cut(s) 102, 548
Fsp4HI GCNGC 3 cut(s) 573, 642, 937
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 576
GluI GCNGC 3 cut(s) 573, 642, 937
GsaI CCCAGC 2 cut(s) 271, 1164
HaeIII GGCC 6 cut(s) 349, 365, 422, 775, 1155, 1202
HapII CCGG 4 cut(s) 346, 390, 548, 1119
HgaI GACGC 1 cut(s) 292
HhaI GCGC 1 cut(s) 577
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 4 cut(s) 622, 825, 835, 1034
Hin6I GCGC 1 cut(s) 575
HinP1I GCGC 1 cut(s) 575
HincII GTYRAC 2 cut(s) 90, 307
HindII GTYRAC 2 cut(s) 90, 307
HinfI GANTC 4 cut(s) 7, 313, 377, 781
HpaII CCGG 4 cut(s) 346, 390, 548, 1119
HphI GGTGA 4 cut(s) 70, 202, 283, 553
Hpy166II GTNNAC 9 cut(s) 90, 141, 148, 307, 330, 385, 758, 986, 1114
Hpy188I TCNGA 6 cut(s) 48, 169, 355, 436, 1075, 1174
Hpy188III TCNNGA 3 cut(s) 187, 701, 862
Hpy8I GTNNAC 9 cut(s) 90, 141, 148, 307, 330, 385, 758, 986, 1114
Hpy99I CGWCG 4 cut(s) 248, 308, 311, 455
HpyAV CCTTC 4 cut(s) 187, 360, 450, 1116
HpyCH4III ACNGT 3 cut(s) 145, 755, 874
HpyCH4IV ACGT 3 cut(s) 243, 453, 537
HpyF10VI GCNNNNNNNGC 7 cut(s) 371, 569, 638, 743, 812, 1166, 1175
HpySE526I ACGT 3 cut(s) 243, 453, 537
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 4 cut(s) 622, 825, 835, 1034
HspAI GCGC 1 cut(s) 575
Ksp22I TGATCA 1 cut(s) 1188
Kzo9I GATC 3 cut(s) 189, 567, 1188
LguI GCTCTTC 1 cut(s) 278
LmnI GCTCC 1 cut(s) 302
Lsp1109I GCAGC 3 cut(s) 584, 628, 948
LweI GCATC 4 cut(s) 686, 948, 1135, 1165
MaeI CTAG 1 cut(s) 56
MaeII ACGT 3 cut(s) 243, 453, 537
MaeIII GTNAC 6 cut(s) 76, 749, 848, 868, 901, 911
MalI GATC 3 cut(s) 191, 569, 1190
MboI GATC 3 cut(s) 189, 567, 1188
MboII GAAGA 5 cut(s) 28, 175, 265, 948, 956
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 4 cut(s) 102, 450, 548, 723
MlsI TGGCCA 1 cut(s) 1202
MluCI AATT 4 cut(s) 198, 424, 787, 992
MluNI TGGCCA 1 cut(s) 1202
MlyI GAGTC 1 cut(s) 790
MmeI TCCRAC 1 cut(s) 378
Mox20I TGGCCA 1 cut(s) 1202
MscI TGGCCA 1 cut(s) 1202
MseI TTAA 2 cut(s) 636, 1005
Msp20I TGGCCA 1 cut(s) 1202
MspI CCGG 4 cut(s) 346, 390, 548, 1119
MspR9I CCNGG 5 cut(s) 346, 548, 777, 981, 1119
MunI CAATTG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 619
MvaI CCWGG 2 cut(s) 777, 981
MvnI CGCG 1 cut(s) 577
MwoI GCNNNNNNNGC 7 cut(s) 371, 569, 638, 743, 812, 1166, 1175
NciI CCSGG 3 cut(s) 346, 548, 1119
NcoI CCATGG 1 cut(s) 618
NdeII GATC 3 cut(s) 189, 567, 1188
NlaIII CATG 4 cut(s) 622, 825, 835, 1034
NlaIV GGNNCC 3 cut(s) 438, 474, 720
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 3 cut(s) 76, 749, 901
NspI RCATGY 1 cut(s) 835
NspV TTCGAA 1 cut(s) 316
PaeI GCATGC 1 cut(s) 835
PaqCI CACCTGC 4 cut(s) 302, 1057, 1063, 1069
PciSI GCTCTTC 1 cut(s) 278
PctI GAATGC 1 cut(s) 619
PfeI GAWTC 3 cut(s) 7, 313, 377
PkrI GCNGC 3 cut(s) 574, 643, 938
PleI GAGTC 1 cut(s) 789
PpsI GAGTC 1 cut(s) 789
Ppu21I YACGTR 1 cut(s) 538
PsiI TTATAA 1 cut(s) 1261
Psp6I CCWGG 2 cut(s) 775, 979
PspFI CCCAGC 2 cut(s) 267, 1160
PspGI CCWGG 2 cut(s) 775, 979
PspN4I GGNNCC 3 cut(s) 438, 474, 720
PspPI GGNCC 5 cut(s) 406, 436, 773, 983, 1154
RsaI GTAC 7 cut(s) 140, 236, 386, 581, 628, 794, 1115
RsaNI GTAC 7 cut(s) 139, 235, 385, 580, 627, 793, 1114
SalI GTCGAC 2 cut(s) 88, 305
SapI GCTCTTC 1 cut(s) 278
SaqAI TTAA 2 cut(s) 636, 1005
SatI GCNGC 3 cut(s) 573, 642, 937
Sau3AI GATC 3 cut(s) 189, 567, 1188
Sau96I GGNCC 5 cut(s) 406, 436, 773, 983, 1154
ScaI AGTACT 1 cut(s) 628
SchI GAGTC 1 cut(s) 790
ScrFI CCNGG 5 cut(s) 346, 548, 777, 981, 1119
SduI GDGCHC 4 cut(s) 102, 450, 548, 723
SfaNI GCATC 4 cut(s) 686, 948, 1135, 1165
SfcI CTRYAG 1 cut(s) 1146
SfuI TTCGAA 1 cut(s) 316
SgrDI CGTCGACG 1 cut(s) 305
SinI GGWCC 3 cut(s) 406, 436, 983
SmlI CTYRAG 1 cut(s) 699
SmoI CTYRAG 1 cut(s) 699
SphI GCATGC 1 cut(s) 835
Sse9I AATT 4 cut(s) 198, 424, 787, 992
SsiI CCGC 5 cut(s) 213, 404, 577, 1013, 1215
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 5 cut(s) 344, 546, 775, 979, 1117
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 3 cut(s) 145, 755, 874
TaiI ACGT 3 cut(s) 246, 456, 540
TaqII GACCGA 1 cut(s) 611
TasI AATT 4 cut(s) 198, 424, 787, 992
TatI WGTACW 3 cut(s) 384, 626, 792
TfiI GAWTC 3 cut(s) 7, 313, 377
Tru1I TTAA 2 cut(s) 636, 1005
Tru9I TTAA 2 cut(s) 636, 1005
TscAI CASTG 4 cut(s) 148, 597, 758, 1116
TseFI GTSAC 3 cut(s) 76, 749, 901
TseI GCWGC 3 cut(s) 572, 641, 936
Tsp45I GTSAC 3 cut(s) 76, 749, 901
TspDTI ATGAA 4 cut(s) 620, 798, 810, 948
TspRI CASTG 4 cut(s) 148, 597, 758, 1116
VpaK11BI GGWCC 3 cut(s) 406, 436, 983
XapI RAATTY 1 cut(s) 992
XceI RCATGY 1 cut(s) 835
XmiI GTMKAC 4 cut(s) 89, 147, 306, 329
XspI CTAG 1 cut(s) 56
ZraI GACGTC 1 cut(s) 244
ZrmI AGTACT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.