Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013375

Physical Location & Seq

Genomic Coordinates Reverse (-)

21422192 .. 21425379

Gene Structure 3188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGCAGCACCCAAAACCCTGTTGCAAAACCCAGACCTTCATCTTCCTCTGGGTTTTAAGCAATGTACTTCTTCTGGCGACCTCAAAGTCAACAATCGAGCCATGCTCCAACTCCGACTCGTGCAATGCTCTCCTCGGCTACAAGGTCTACACCGAGCTCAAAGTCTCCGAAGTAGCTTCACTCTTCCAGGTCGACCCAATCGCTATCCTCACCGCCAATGCCATCGACATTTCGTACCCCGACGTCGAAAACCACATTCTCCCCTCCCAGCTCTTCCTCAAAATCCCAATCATGTGTTCCTGCGTCGACGGAATCCGCAAGTCCGTTTCGACCCACTACAAGACCCAGCCTTCAGACACTCTCGCATCCATTGCCGACTCGATGTACTCGGGTTTGGTGTCTGCGGACCAGATTCGGGAGGCTAATTCGATTTCGGACCCGTCGGTGCTCGATGTGGGACAGACGCTTGTGGTGCCTCTGCCGTGTACTTGCTTCAATGGGACGGATAATCTGTTGCCAGCGATTTACTTGTCGTATGTGGTGACGCCGGATGACACGCTGGCGGGGATTGCGGCTAGGTATTCGACTACGCTGACGGATTTGATGAATGTTAATGCAATGGGGAGCTCGGCTATTAAGGCTGCTGATATTCTTGCAATTCCATTGCCTGCTTGTGCATCAAACTTTCCTAGCTATGCTTCAGACTACGGCTTAATTGTACCCAACGGGAGCTATGCAATTACAGCAAGTCACTGCCTTCAATGCAGTTGTGGTCCTGGGAGTCTCAATTTGTACTGTGAGCCTGCTTCATTAGCAGTTTCGTGTTCGAGCATGCAATGTAAAAACAGTAACCTCATGGTCGGGAACATTACAGCACAGCAAACTAGTGCTGGTTGCAATGTCAGTTCTTGCAACTATGGTGGTTTTGTGAATGGCTCCATAGTAACGACGTTGTCCACATCTCTTCGGCCTCGCTGCCCAGGACCACAACAATTTCCGCCACTCATAGCTCCACCAACTTCAGTAATCCGGGATACAACATTTGCACCAGCACCCTCACCCCAGTCCGATGGCTCTGGAACAGGAACACCCCAGTCTACGGTGCCTTCAACGACGTCCGGTTCACTTCCAGGTTTAGCCCCCATGGGTGGTCCTTCGGGGAGTTCTTCTGCTGCTTCTTCCCTGGTTAAGCCATTGACCAATTTCCCAAGTGCAGTTTTGTTACTCTTGTGCGTCAAGTTCATGATGGCCATCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005488 GO:0005539 GO:0005575 GO:0005623 GO:0005886 GO:0006955 GO:0008150 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0042834 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0071944 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

420

Amino Acids

43.64

Weight (kDa)

5.12

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM2_CERK1_LYK3_4_5	PF23472	111 - 160	5.2e-08	LYK3/4/5 LysM2 domain
LysM	PF01476	113 - 159	2.3e-09	LysM domain
LysM	PF01476	179 - 221	3.2e-08	LysM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21880 AT1G21880
fragaria_vesca	FvH4_2g26750
malus_domestica	MD08G1165500.v1.1 MD15G1351200.v1.1
prunus_persica	Prupe.1G500000_v2.0.a1
pyrus_communis	pycom12654g00100
rosa_chinensis	RchiOBHm_Chr6g0295631
rosa_laevigata	RLG00000011781
rosa_multiflora	Rmu_sc0005000.1_g000002 Rmu_sc0006802.1_g000011
rosa_roxburghii	Rroxscaffold_7G00172300
rosa_rugosa	Rorug06G0253000
rosa_samantha	Rh6AG366000 Rh6BG374100 Rh6CG380400 Rh6DG367200
rosa_wichuraiana	Rw6G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AatII	GACGTC	2 cut(s)	246, 1118
AccB1I	GGYRCC	2 cut(s)	472, 1102
AccI	GTMKAC	4 cut(s)	147, 192, 306, 1097
AciI	CCGC	6 cut(s)	213, 316, 404, 563, 572, 998
AcoI	YGGCCR	1 cut(s)	1248
AcuI	CTGAAG	3 cut(s)	336, 684, 1005
AcyI	GRCGYC	3 cut(s)	243, 545, 1115
AfaI	GTAC	6 cut(s)	66, 236, 386, 487, 720, 794
AfiI	CCNNNNNNNGG	3 cut(s)	415, 1099, 1148
AgsI	TTSAA	3 cut(s)	496, 761, 1110
AhlI	ACTAGT	1 cut(s)	884
AjnI	CCWGG	5 cut(s)	186, 775, 979, 1129, 1182
AjuI	GAANNNNNNNTTGG	2 cut(s)	280, 312
AluBI	AGCT	7 cut(s)	157, 176, 271, 627, 693, 732, 1010
AluI	AGCT	7 cut(s)	157, 176, 271, 627, 693, 732, 1010
Alw21I	GWGCWC	3 cut(s)	159, 450, 629
Alw26I	GTCTC	2 cut(s)	169, 788
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	2 cut(s)	968, 1248
ApeKI	GCWGC	4 cut(s)	4, 641, 975, 1172
AspS9I	GGNCC	5 cut(s)	406, 436, 773, 983, 1151
AsuC2I	CCSGG	1 cut(s)	1031
AsuHPI	GGTGA	3 cut(s)	202, 553, 1050
AvaI	CYCGRG	1 cut(s)	388
AvaII	GGWCC	5 cut(s)	406, 436, 773, 983, 1151
BalI	TGGCCA	1 cut(s)	1250
BanI	GGYRCC	2 cut(s)	472, 1102
BanII	GRGCYC	2 cut(s)	159, 629
BauI	CACGAG	1 cut(s)	118
Bbv12I	GWGCWC	3 cut(s)	159, 450, 629
BbvI	GCAGC	4 cut(s)	16, 628, 962, 1159
BccI	CCATC	4 cut(s)	230, 1064, 1240, 1259
BceAI	ACGGC	2 cut(s)	466, 724
BciT130I	CCWGG	5 cut(s)	188, 777, 981, 1131, 1184
BciVI	GTATCC	1 cut(s)	1027
BcnI	CCSGG	1 cut(s)	1031
BcoDI	GTCTC	2 cut(s)	169, 788
BcuI	ACTAGT	1 cut(s)	884
BfaI	CTAG	3 cut(s)	576, 690, 885
BfuI	GTATCC	1 cut(s)	1027
BisI	GCNGC	5 cut(s)	5, 573, 642, 976, 1173
BlsI	GCNGC	5 cut(s)	6, 574, 643, 977, 1174
Bme1390I	CCNGG	6 cut(s)	188, 777, 981, 1031, 1131, 1184
Bme18I	GGWCC	5 cut(s)	406, 436, 773, 983, 1151
BmeT110I	CYCGRG	1 cut(s)	388
BmgT120I	GGNCC	5 cut(s)	406, 436, 773, 983, 1151
BmiI	GGNNCC	4 cut(s)	438, 474, 937, 1104
BmrFI	CCNGG	6 cut(s)	188, 777, 981, 1031, 1131, 1184
BmrI	ACTGGG	2 cut(s)	1057, 1087
BmsI	GCATC	2 cut(s)	374, 686
BmuI	ACTGGG	2 cut(s)	1057, 1087
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpuMI	CCSGG	1 cut(s)	1031
BsaBI	GATNNNNATC	1 cut(s)	1250
BsaHI	GRCGYC	3 cut(s)	243, 545, 1115
BsaJI	CCNNGG	5 cut(s)	133, 776, 979, 1143, 1182
BsaWI	WCCGGW	1 cut(s)	1118
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 1099, 1148
Bse1I	ACTGG	2 cut(s)	1063, 1093
Bse3DI	GCAATG	7 cut(s)	67, 130, 369, 624, 662, 842, 904
Bse8I	GATNNNNATC	1 cut(s)	1250
BseBI	CCWGG	5 cut(s)	188, 777, 981, 1131, 1184
BseDI	CCNNGG	5 cut(s)	133, 776, 979, 1143, 1182
BseGI	GGATG	2 cut(s)	365, 556
BseJI	GATNNNNATC	1 cut(s)	1250
BseLI	CCNNNNNNNGG	3 cut(s)	415, 1099, 1148
BseMI	GCAATG	7 cut(s)	67, 130, 369, 624, 662, 842, 904
BseNI	ACTGG	2 cut(s)	1063, 1093
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	4 cut(s)	16, 628, 962, 1159
BseYI	CCCAGC	2 cut(s)	267, 345
BsgI	GTGCAG	1 cut(s)	1233
BshFI	GGCC	2 cut(s)	970, 1250
BshNI	GGYRCC	2 cut(s)	472, 1102
BsiHKAI	GWGCWC	3 cut(s)	159, 450, 629
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	3 cut(s)	548, 1030, 1119
BslFI	GGGAC	2 cut(s)	471, 514
BslI	CCNNNNNNNGG	3 cut(s)	415, 1099, 1148
BsmAI	GTCTC	2 cut(s)	169, 788
BsmFI	GGGAC	2 cut(s)	471, 514
BsnI	GGCC	2 cut(s)	970, 1250
BsoBI	CYCGRG	1 cut(s)	388
Bsp1286I	GDGCHC	3 cut(s)	159, 450, 629
Bsp19I	CCATGG	1 cut(s)	1143
BspACI	CCGC	6 cut(s)	213, 316, 404, 563, 572, 998
BspANI	GGCC	2 cut(s)	970, 1250
BspHI	TCATGA	1 cut(s)	1242
BspLI	GGNNCC	4 cut(s)	438, 474, 937, 1104
BspQI	GCTCTTC	1 cut(s)	278
BspT107I	GGYRCC	2 cut(s)	472, 1102
BsrDI	GCAATG	7 cut(s)	67, 130, 369, 624, 662, 842, 904
BsrI	ACTGG	2 cut(s)	1063, 1093
BssECI	CCNNGG	5 cut(s)	133, 776, 979, 1143, 1182
BssNI	GRCGYC	3 cut(s)	243, 545, 1115
BssSI	CACGAG	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	1143
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	5 cut(s)	188, 777, 981, 1131, 1184
Bst4CI	ACNGT	3 cut(s)	797, 848, 1102
Bst6I	CTCTTC	3 cut(s)	188, 278, 969
BstACI	GRCGYC	3 cut(s)	243, 545, 1115
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	5 cut(s)	519, 561, 669, 804, 833
BstDSI	CCRYGG	1 cut(s)	1143
BstF5I	GGATG	2 cut(s)	365, 556
BstMAI	GTCTC	2 cut(s)	169, 788
BstMWI	GCNNNNNNNGC	7 cut(s)	371, 472, 569, 638, 743, 762, 812
BstNI	CCWGG	5 cut(s)	188, 777, 981, 1131, 1184
BstNSI	RCATGY	1 cut(s)	835
BstSCI	CCNGG	6 cut(s)	186, 775, 979, 1029, 1129, 1182
BstV1I	GCAGC	4 cut(s)	16, 628, 962, 1159
BstXI	CCANNNNNNTGG	1 cut(s)	1070
BsuI	GTATCC	1 cut(s)	1027
BsuRI	GGCC	2 cut(s)	970, 1250
BtgI	CCRYGG	1 cut(s)	1143
BtsCI	GGATG	2 cut(s)	365, 556
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	1 cut(s)	751
Cac8I	GCNNGC	5 cut(s)	519, 561, 669, 804, 833
CciI	TCATGA	1 cut(s)	1242
Cfr13I	GGNCC	5 cut(s)	406, 436, 773, 983, 1151
CseI	GACGC	4 cut(s)	292, 472, 553, 1222
Csp6I	GTAC	6 cut(s)	65, 235, 385, 486, 719, 793
CspCI	CAANNNNNGTGG	2 cut(s)	901, 936
CviAII	CATG	6 cut(s)	102, 292, 832, 856, 1144, 1243
CviQI	GTAC	6 cut(s)	65, 235, 385, 486, 719, 793
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	1248
Eam1104I	CTCTTC	3 cut(s)	188, 278, 969
EarI	CTCTTC	3 cut(s)	188, 278, 969
EciI	GGCGGA	1 cut(s)	987
Ecl136II	GAGCTC	2 cut(s)	157, 627
Eco130I	CCWWGG	1 cut(s)	1143
Eco24I	GRGCYC	2 cut(s)	159, 629
Eco47I	GGWCC	5 cut(s)	406, 436, 773, 983, 1151
Eco53kI	GAGCTC	2 cut(s)	157, 627
Eco57I	CTGAAG	3 cut(s)	336, 684, 1005
Eco88I	CYCGRG	1 cut(s)	388
EcoICRI	GAGCTC	2 cut(s)	157, 627
EcoRII	CCWGG	5 cut(s)	186, 775, 979, 1129, 1182
EcoT14I	CCWWGG	1 cut(s)	1143
EcoT38I	GRGCYC	2 cut(s)	159, 629
ErhI	CCWWGG	1 cut(s)	1143
FaeI	CATG	6 cut(s)	105, 295, 835, 859, 1147, 1246
FaqI	GGGAC	2 cut(s)	471, 514
FatI	CATG	6 cut(s)	101, 291, 831, 855, 1143, 1242
FauI	CCCGC	1 cut(s)	556
FblI	GTMKAC	4 cut(s)	147, 192, 306, 1097
Fnu4HI	GCNGC	5 cut(s)	5, 573, 642, 976, 1173
FokI	GGATG	2 cut(s)	352, 563
FriOI	GRGCYC	2 cut(s)	159, 629
Fsp4HI	GCNGC	5 cut(s)	5, 573, 642, 976, 1173
FspBI	CTAG	3 cut(s)	576, 690, 885
GluI	GCNGC	5 cut(s)	5, 573, 642, 976, 1173
GsaI	CCCAGC	2 cut(s)	271, 349
HaeIII	GGCC	2 cut(s)	970, 1250
HapII	CCGG	3 cut(s)	548, 1030, 1119
HgaI	GACGC	4 cut(s)	292, 472, 553, 1222
Hin1I	GRCGYC	3 cut(s)	243, 545, 1115
Hin1II	CATG	6 cut(s)	105, 295, 835, 859, 1147, 1246
HincII	GTYRAC	3 cut(s)	90, 193, 307
HindII	GTYRAC	3 cut(s)	90, 193, 307
HinfI	GANTC	5 cut(s)	116, 312, 377, 412, 781
HpaII	CCGG	3 cut(s)	548, 1030, 1119
HphI	GGTGA	3 cut(s)	202, 553, 1050
Hpy166II	GTNNAC	8 cut(s)	90, 148, 193, 307, 486, 957, 1098, 1124
Hpy188I	TCNGA	6 cut(s)	115, 169, 355, 436, 703, 1069
Hpy188III	TCNNGA	4 cut(s)	416, 862, 1077, 1243
Hpy8I	GTNNAC	8 cut(s)	90, 148, 193, 307, 486, 957, 1098, 1124
Hpy99I	CGWCG	7 cut(s)	245, 248, 308, 311, 445, 952, 1117
HpyAV	CCTTC	5 cut(s)	46, 360, 767, 1116, 1164
HpyCH4III	ACNGT	3 cut(s)	797, 848, 1102
HpyCH4IV	ACGT	3 cut(s)	243, 950, 1115
HpyF10VI	GCNNNNNNNGC	7 cut(s)	371, 472, 569, 638, 743, 762, 812
HpySE526I	ACGT	3 cut(s)	243, 950, 1115
Hsp92I	GRCGYC	3 cut(s)	243, 545, 1115
Hsp92II	CATG	6 cut(s)	105, 295, 835, 859, 1147, 1246
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	5 cut(s)	110, 624, 729, 941, 1015
Lsp1109I	GCAGC	4 cut(s)	16, 628, 962, 1159
LweI	GCATC	2 cut(s)	374, 686
MaeI	CTAG	3 cut(s)	576, 690, 885
MaeII	ACGT	3 cut(s)	243, 950, 1115
MaeIII	GTNAC	5 cut(s)	541, 749, 848, 943, 1221
MboII	GAAGA	7 cut(s)	34, 62, 175, 265, 956, 1158, 1170
MhlI	GDGCHC	3 cut(s)	159, 450, 629
MlsI	TGGCCA	1 cut(s)	1250
MluCI	AATT	7 cut(s)	424, 657, 714, 738, 787, 992, 1201
MluNI	TGGCCA	1 cut(s)	1250
MlyI	GAGTC	3 cut(s)	110, 371, 790
MmeI	TCCRAC	2 cut(s)	132, 138
Mox20I	TGGCCA	1 cut(s)	1250
MscI	TGGCCA	1 cut(s)	1250
MseI	TTAA	5 cut(s)	56, 612, 636, 713, 1188
Msp20I	TGGCCA	1 cut(s)	1250
MspI	CCGG	3 cut(s)	548, 1030, 1119
MspR9I	CCNGG	6 cut(s)	188, 777, 981, 1031, 1131, 1184
MvaI	CCWGG	5 cut(s)	188, 777, 981, 1131, 1184
MwoI	GCNNNNNNNGC	7 cut(s)	371, 472, 569, 638, 743, 762, 812
NciI	CCSGG	1 cut(s)	1031
NcoI	CCATGG	1 cut(s)	1143
NlaIII	CATG	6 cut(s)	105, 295, 835, 859, 1147, 1246
NlaIV	GGNNCC	4 cut(s)	438, 474, 937, 1104
NmeAIII	GCCGAG	2 cut(s)	114, 608
NmuCI	GTSAC	2 cut(s)	541, 749
NspI	RCATGY	1 cut(s)	835
PaeI	GCATGC	1 cut(s)	835
PagI	TCATGA	1 cut(s)	1242
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	312, 412
PflFI	GACNNNGTC	1 cut(s)	952
PfoI	TCCNGGA	1 cut(s)	1029
PkrI	GCNGC	5 cut(s)	6, 574, 643, 977, 1174
PleI	GAGTC	3 cut(s)	110, 371, 789
PpsI	GAGTC	3 cut(s)	110, 371, 789
Psp124BI	GAGCTC	2 cut(s)	159, 629
Psp6I	CCWGG	5 cut(s)	186, 775, 979, 1129, 1182
PspFI	CCCAGC	2 cut(s)	267, 345
PspGI	CCWGG	5 cut(s)	186, 775, 979, 1129, 1182
PspN4I	GGNNCC	4 cut(s)	438, 474, 937, 1104
PspPI	GGNCC	5 cut(s)	406, 436, 773, 983, 1151
PsyI	GACNNNGTC	1 cut(s)	952
RsaI	GTAC	6 cut(s)	66, 236, 386, 487, 720, 794
RsaNI	GTAC	6 cut(s)	65, 235, 385, 486, 719, 793
SacI	GAGCTC	2 cut(s)	159, 629
SalI	GTCGAC	2 cut(s)	191, 305
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	5 cut(s)	56, 612, 636, 713, 1188
SatI	GCNGC	5 cut(s)	5, 573, 642, 976, 1173
Sau96I	GGNCC	5 cut(s)	406, 436, 773, 983, 1151
SchI	GAGTC	3 cut(s)	110, 371, 790
ScrFI	CCNGG	6 cut(s)	188, 777, 981, 1031, 1131, 1184
SduI	GDGCHC	3 cut(s)	159, 450, 629
SfaNI	GCATC	2 cut(s)	374, 686
SgrDI	CGTCGACG	1 cut(s)	305
SinI	GGWCC	5 cut(s)	406, 436, 773, 983, 1151
SpeI	ACTAGT	1 cut(s)	884
SphI	GCATGC	1 cut(s)	835
Sse9I	AATT	7 cut(s)	424, 657, 714, 738, 787, 992, 1201
SsiI	CCGC	6 cut(s)	213, 316, 404, 563, 572, 998
SspMI	CTAG	3 cut(s)	576, 690, 885
SstI	GAGCTC	2 cut(s)	159, 629
StyD4I	CCNGG	6 cut(s)	186, 775, 979, 1029, 1129, 1182
StyI	CCWWGG	1 cut(s)	1143
TaaI	ACNGT	3 cut(s)	797, 848, 1102
TaiI	ACGT	3 cut(s)	246, 953, 1118
TasI	AATT	7 cut(s)	424, 657, 714, 738, 787, 992, 1201
TatI	WGTACW	4 cut(s)	64, 384, 485, 792
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	2 cut(s)	312, 412
Tru1I	TTAA	5 cut(s)	56, 612, 636, 713, 1188
Tru9I	TTAA	5 cut(s)	56, 612, 636, 713, 1188
TscAI	CASTG	1 cut(s)	758
TseFI	GTSAC	2 cut(s)	541, 749
TseI	GCWGC	4 cut(s)	4, 641, 975, 1172
Tsp45I	GTSAC	2 cut(s)	541, 749
TspDTI	ATGAA	4 cut(s)	28, 620, 798, 1231
TspGWI	ACGGA	4 cut(s)	313, 324, 518, 611
TspRI	CASTG	1 cut(s)	758
Tth111I	GACNNNGTC	1 cut(s)	952
VpaK11BI	GGWCC	5 cut(s)	406, 436, 773, 983, 1151
XceI	RCATGY	1 cut(s)	835
XmiI	GTMKAC	4 cut(s)	147, 192, 306, 1097
XspI	CTAG	3 cut(s)	576, 690, 885
ZraI	GACGTC	2 cut(s)	244, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.