Rmu_sc0006802.1_g000011

lysM domain-containing GPI-anchored protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006802.1
Physical Location & Seq
Forward (+)
42905 .. 45056
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006802.1_g000011.1.cds

Sequence Viewer

Length: 1131 bp
atgctcggctacaaggtctacaccgagctcaaggtctccgaagtagcttccctcttccaggtcgaccccatctctatcctcaccgccaatgccatcgacatttcgtaccccgacgtcgaaaaccacattctgccctccgacctcttcctcaaaatcccaatcaactgttcctgcgtcgacggaatccgaaaatcggtgtcgacccactacaagacccggccctccgacaccttggcctccattgccgactcggtctactccggtttggtgtcggcggaccagattcgggaggctaattcgatttcggacccgtcggtgctggatgtgggacagacgcttgtggtgcccctgccgtgtacttgcttcaatgggacggataattcgttgccggcgatttacttgtcgtatgtggtgacccccgaggactcgctggcggggattgcggccaggtattcgactacgctgacggatttgatgaatgttaatgccatggggagctcggctgttagggcttctgatattatttcaattccattgcctgcctgtgcatcaaactttcctagctatgctgcagatcacggcttgattgtgcccaacgggagctatgccattacagcaagtcactgccttcaatgcagttgtggtcctgggagtctaaatttgtactgtgagcctgcttcattagcagtttcgtgttcaagcatgcaatgtaaaaacagtaacctcatggtgggcaacattacagcgcagcaaactagtgctggttgcaatgttagttcttgcaactatggtggtttcgtgaatggctccataatcacgacgttgtccacatctcttcggcctcgctgcccaggaccacaacaatttccaccgctcaaagccccacccacttcagtaatccgggatgcaacatttgcaccagcacctgcaccccagtctgatggctcgatagcaggagcaccccagtctacggtgccttcaacgacatccagttcacttccaggattagcgcccataggtggtccttccgggagttcttctgctgcttgctccttggttacgccattgaccaatttgccaagtgcagttttgttactcttgtgtgtcaagttcatgatggccatcttatga

Protein Analysis

376

Amino Acids

38.82

Weight (kDa)

4.95

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013375)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 934
AatII GACGTC 1 cut(s) 117
Acc36I ACCTGC 1 cut(s) 934
AccB1I GGYRCC 2 cut(s) 343, 973
AccBSI CCGCTC 1 cut(s) 874
AccI GTMKAC 6 cut(s) 18, 63, 177, 200, 255, 968
AciI CCGC 5 cut(s) 84, 275, 434, 443, 872
AcoI YGGCCR 2 cut(s) 444, 1119
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 876
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 3 cut(s) 107, 358, 665
AfiI CCNNNNNNNGG 6 cut(s) 58, 193, 286, 730, 970, 1019
AgsI TTSAA 5 cut(s) 367, 528, 632, 699, 981
AhlI ACTAGT 1 cut(s) 755
AjnI CCWGG 5 cut(s) 57, 446, 646, 850, 1000
AjuI GAANNNNNNNTTGG 2 cut(s) 151, 183
AluBI AGCT 5 cut(s) 28, 47, 498, 564, 603
AluI AGCT 5 cut(s) 28, 47, 498, 564, 603
Alw21I GWGCWC 3 cut(s) 30, 500, 961
Alw26I GTCTC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 926
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 5 cut(s) 218, 234, 444, 839, 1119
ApeKI GCWGC 4 cut(s) 569, 748, 846, 1043
ApoI RAATTY 1 cut(s) 658
ArsI GACNNNNNNTTYG 2 cut(s) 364, 396
AspLEI GCGC 2 cut(s) 748, 1012
AspS9I GGNCC 6 cut(s) 219, 277, 307, 644, 854, 1022
AsuC2I CCSGG 3 cut(s) 217, 902, 1030
AsuHPI GGTGA 2 cut(s) 73, 424
AvaI CYCGRG 1 cut(s) 419
AvaII GGWCC 5 cut(s) 277, 307, 644, 854, 1022
BaeGI GKGCMC 2 cut(s) 348, 594
BalI TGGCCA 1 cut(s) 1121
BanI GGYRCC 2 cut(s) 343, 973
BanII GRGCYC 2 cut(s) 30, 500
Bbv12I GWGCWC 3 cut(s) 30, 500, 961
BbvI GCAGC 4 cut(s) 556, 760, 833, 1030
BccI CCATC 5 cut(s) 77, 101, 935, 1111, 1130
BceAI ACGGC 2 cut(s) 337, 595
BciT130I CCWGG 5 cut(s) 59, 448, 648, 852, 1002
BcnI CCSGG 3 cut(s) 217, 902, 1030
BcoDI GTCTC 1 cut(s) 40
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 2 cut(s) 561, 756
BfmI CTRYAG 1 cut(s) 570
BfoI RGCGCY 1 cut(s) 1013
BfuAI ACCTGC 1 cut(s) 934
BisI GCNGC 5 cut(s) 444, 570, 749, 847, 1044
BlsI GCNGC 5 cut(s) 445, 571, 750, 848, 1045
Bme1390I CCNGG 8 cut(s) 59, 217, 448, 648, 852, 902, 1002, 1030
Bme18I GGWCC 5 cut(s) 277, 307, 644, 854, 1022
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 6 cut(s) 219, 277, 307, 644, 854, 1022
BmiI GGNNCC 4 cut(s) 309, 345, 808, 975
BmrFI CCNGG 8 cut(s) 59, 217, 448, 648, 852, 902, 1002, 1030
BmrI ACTGGG 2 cut(s) 928, 958
BmsI GCATC 2 cut(s) 557, 895
BmuI ACTGGG 2 cut(s) 928, 958
BpuEI CTTGAG 1 cut(s) 14
BpuMI CCSGG 3 cut(s) 217, 902, 1030
BsaBI GATNNNNATC 1 cut(s) 1121
BsaHI GRCGYC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 6 cut(s) 231, 420, 489, 647, 850, 1053
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 193, 286, 730, 970, 1019
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 3 cut(s) 934, 964, 990
Bse3DI GCAATG 4 cut(s) 240, 533, 713, 775
Bse8I GATNNNNATC 1 cut(s) 1121
BseBI CCWGG 5 cut(s) 59, 448, 648, 852, 1002
BseDI CCNNGG 6 cut(s) 231, 420, 489, 647, 850, 1053
BseGI GGATG 3 cut(s) 328, 910, 986
BseJI GATNNNNATC 1 cut(s) 1121
BseLI CCNNNNNNNGG 6 cut(s) 58, 193, 286, 730, 970, 1019
BseMI GCAATG 4 cut(s) 240, 533, 713, 775
BseNI ACTGG 3 cut(s) 934, 964, 990
BseSI GKGCMC 2 cut(s) 348, 594
BseXI GCAGC 4 cut(s) 556, 760, 833, 1030
BsgI GTGCAG 2 cut(s) 912, 1104
BshFI GGCC 5 cut(s) 220, 236, 446, 841, 1121
BshNI GGYRCC 2 cut(s) 343, 973
BsiHKAI GWGCWC 3 cut(s) 30, 500, 961
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 5 cut(s) 217, 261, 389, 901, 1029
BslFI GGGAC 2 cut(s) 342, 385
BslI CCNNNNNNNGG 6 cut(s) 58, 193, 286, 730, 970, 1019
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 2 cut(s) 342, 385
BsnI GGCC 5 cut(s) 220, 236, 446, 841, 1121
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 419
Bsp1286I GDGCHC 5 cut(s) 30, 348, 500, 594, 961
Bsp143I GATC 1 cut(s) 574
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 5 cut(s) 84, 275, 434, 443, 872
BspANI GGCC 5 cut(s) 220, 236, 446, 841, 1121
BspHI TCATGA 1 cut(s) 1113
BspLI GGNNCC 4 cut(s) 309, 345, 808, 975
BspMAI CTGCAG 1 cut(s) 574
BspMI ACCTGC 1 cut(s) 934
BspT107I GGYRCC 2 cut(s) 343, 973
BspTNI GGTCTC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 874
BsrDI GCAATG 4 cut(s) 240, 533, 713, 775
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 3 cut(s) 934, 964, 990
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 6 cut(s) 231, 420, 489, 647, 850, 1053
BssMI GATC 1 cut(s) 574
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 3 cut(s) 231, 489, 1053
Bst2UI CCWGG 5 cut(s) 59, 448, 648, 852, 1002
Bst4CI ACNGT 4 cut(s) 167, 668, 719, 973
Bst6I CTCTTC 3 cut(s) 59, 149, 840
BstACI GRCGYC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 914
BstC8I GCNNGC 6 cut(s) 390, 432, 540, 675, 704, 1048
BstDSI CCRYGG 1 cut(s) 489
BstEII GGTNACC 1 cut(s) 412
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 3 cut(s) 328, 910, 986
BstH2I RGCGCY 1 cut(s) 1013
BstHHI GCGC 2 cut(s) 748, 1012
BstKTI GATC 1 cut(s) 577
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 574
BstMWI GCNNNNNNNGC 8 cut(s) 242, 343, 440, 509, 614, 633, 683, 914
BstNI CCWGG 5 cut(s) 59, 448, 648, 852, 1002
BstNSI RCATGY 1 cut(s) 706
BstPI GGTNACC 1 cut(s) 412
BstSCI CCNGG 8 cut(s) 57, 215, 446, 646, 850, 900, 1000, 1028
BstSFI CTRYAG 1 cut(s) 570
BstSLI GKGCMC 2 cut(s) 348, 594
BstV1I GCAGC 4 cut(s) 556, 760, 833, 1030
BstXI CCANNNNNNTGG 1 cut(s) 941
BsuRI GGCC 5 cut(s) 220, 236, 446, 841, 1121
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 3 cut(s) 328, 910, 986
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 1 cut(s) 622
BveI ACCTGC 1 cut(s) 934
Cac8I GCNNGC 6 cut(s) 390, 432, 540, 675, 704, 1048
CaiI CAGNNNCTG 1 cut(s) 926
CciI TCATGA 1 cut(s) 1113
CfoI GCGC 2 cut(s) 748, 1012
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 6 cut(s) 219, 277, 307, 644, 854, 1022
CseI GACGC 2 cut(s) 163, 343
Csp6I GTAC 3 cut(s) 106, 357, 664
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviAII CATG 4 cut(s) 490, 703, 727, 1114
CviQI GTAC 3 cut(s) 106, 357, 664
DpnI GATC 1 cut(s) 576
DpnII GATC 1 cut(s) 574
EaeI YGGCCR 2 cut(s) 444, 1119
Eam1104I CTCTTC 3 cut(s) 59, 149, 840
EarI CTCTTC 3 cut(s) 59, 149, 840
EciI GGCGGA 1 cut(s) 290
Ecl136II GAGCTC 2 cut(s) 28, 498
Eco130I CCWWGG 3 cut(s) 231, 489, 1053
Eco24I GRGCYC 2 cut(s) 30, 500
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 5 cut(s) 277, 307, 644, 854, 1022
Eco53kI GAGCTC 2 cut(s) 28, 498
Eco57I CTGAAG 1 cut(s) 876
Eco88I CYCGRG 1 cut(s) 419
Eco91I GGTNACC 1 cut(s) 412
EcoICRI GAGCTC 2 cut(s) 28, 498
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 412
EcoRII CCWGG 5 cut(s) 57, 446, 646, 850, 1000
EcoT14I CCWWGG 3 cut(s) 231, 489, 1053
EcoT38I GRGCYC 2 cut(s) 30, 500
ErhI CCWWGG 3 cut(s) 231, 489, 1053
FaeI CATG 4 cut(s) 493, 706, 730, 1117
FaqI GGGAC 2 cut(s) 342, 385
FatI CATG 4 cut(s) 489, 702, 726, 1113
FauI CCCGC 1 cut(s) 427
FblI GTMKAC 6 cut(s) 18, 63, 177, 200, 255, 968
Fnu4HI GCNGC 5 cut(s) 444, 570, 749, 847, 1044
FokI GGATG 3 cut(s) 335, 917, 973
FriOI GRGCYC 2 cut(s) 30, 500
Fsp4HI GCNGC 5 cut(s) 444, 570, 749, 847, 1044
FspBI CTAG 2 cut(s) 561, 756
GlaI GCGC 2 cut(s) 747, 1011
GluI GCNGC 5 cut(s) 444, 570, 749, 847, 1044
HaeII RGCGCY 1 cut(s) 1013
HaeIII GGCC 5 cut(s) 220, 236, 446, 841, 1121
HapII CCGG 5 cut(s) 217, 261, 389, 901, 1029
HgaI GACGC 2 cut(s) 163, 343
HhaI GCGC 2 cut(s) 748, 1012
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 4 cut(s) 493, 706, 730, 1117
Hin6I GCGC 2 cut(s) 746, 1010
HinP1I GCGC 2 cut(s) 746, 1010
HincII GTYRAC 3 cut(s) 64, 178, 201
HindII GTYRAC 3 cut(s) 64, 178, 201
HinfI GANTC 5 cut(s) 183, 248, 283, 425, 652
HpaII CCGG 5 cut(s) 217, 261, 389, 901, 1029
HphI GGTGA 2 cut(s) 73, 424
Hpy166II GTNNAC 9 cut(s) 19, 64, 178, 201, 256, 357, 828, 969, 995
Hpy188I TCNGA 7 cut(s) 40, 139, 188, 226, 307, 517, 940
Hpy188III TCNNGA 4 cut(s) 287, 799, 817, 1114
Hpy8I GTNNAC 9 cut(s) 19, 64, 178, 201, 256, 357, 828, 969, 995
Hpy99I CGWCG 6 cut(s) 116, 119, 179, 182, 316, 823
HpyAV CCTTC 3 cut(s) 638, 987, 1035
HpyCH4III ACNGT 4 cut(s) 167, 668, 719, 973
HpyCH4IV ACGT 2 cut(s) 114, 821
HpyF10VI GCNNNNNNNGC 8 cut(s) 242, 343, 440, 509, 614, 633, 683, 914
HpySE526I ACGT 2 cut(s) 114, 821
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 4 cut(s) 493, 706, 730, 1117
HspAI GCGC 2 cut(s) 746, 1010
KroI GCCGGC 1 cut(s) 388
KroNI GCCGGC 1 cut(s) 390
Kzo9I GATC 1 cut(s) 574
LmnI GCTCC 5 cut(s) 495, 600, 812, 956, 1055
Lsp1109I GCAGC 4 cut(s) 556, 760, 833, 1030
LweI GCATC 2 cut(s) 557, 895
MaeI CTAG 2 cut(s) 561, 756
MaeII ACGT 2 cut(s) 114, 821
MaeIII GTNAC 5 cut(s) 412, 620, 719, 1057, 1092
MalI GATC 1 cut(s) 576
MbiI CCGCTC 1 cut(s) 874
MboI GATC 1 cut(s) 574
MboII GAAGA 4 cut(s) 46, 136, 827, 1029
MhlI GDGCHC 5 cut(s) 30, 348, 500, 594, 961
MlsI TGGCCA 1 cut(s) 1121
MluCI AATT 6 cut(s) 295, 379, 528, 658, 863, 1072
MluNI TGGCCA 1 cut(s) 1121
MlyI GAGTC 3 cut(s) 242, 419, 661
MmeI TCCRAC 2 cut(s) 162, 249
Mox20I TGGCCA 1 cut(s) 1121
MroNI GCCGGC 1 cut(s) 388
MscI TGGCCA 1 cut(s) 1121
MseI TTAA 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 1121
MspI CCGG 5 cut(s) 217, 261, 389, 901, 1029
MspR9I CCNGG 8 cut(s) 59, 217, 448, 648, 852, 902, 1002, 1030
MvaI CCWGG 5 cut(s) 59, 448, 648, 852, 1002
MwoI GCNNNNNNNGC 8 cut(s) 242, 343, 440, 509, 614, 633, 683, 914
NaeI GCCGGC 1 cut(s) 390
NciI CCSGG 3 cut(s) 217, 902, 1030
NcoI CCATGG 1 cut(s) 489
NdeII GATC 1 cut(s) 574
NgoMIV GCCGGC 1 cut(s) 388
NlaIII CATG 4 cut(s) 493, 706, 730, 1117
NlaIV GGNNCC 4 cut(s) 309, 345, 808, 975
NmeAIII GCCGAG 1 cut(s) 479
NmuCI GTSAC 2 cut(s) 412, 620
NspI RCATGY 1 cut(s) 706
PaeI GCATGC 1 cut(s) 706
PagI TCATGA 1 cut(s) 1113
PaqCI CACCTGC 1 cut(s) 934
PcsI WCGNNNNNNNCGW 2 cut(s) 380, 389
PdiI GCCGGC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 183, 283
PflFI GACNNNGTC 2 cut(s) 251, 823
PfoI TCCNGGA 3 cut(s) 900, 1000, 1028
PkrI GCNGC 5 cut(s) 445, 571, 750, 848, 1045
PleI GAGTC 3 cut(s) 242, 419, 660
PpsI GAGTC 3 cut(s) 242, 419, 660
Psp124BI GAGCTC 2 cut(s) 30, 500
Psp6I CCWGG 5 cut(s) 57, 446, 646, 850, 1000
PspEI GGTNACC 1 cut(s) 412
PspGI CCWGG 5 cut(s) 57, 446, 646, 850, 1000
PspN4I GGNNCC 4 cut(s) 309, 345, 808, 975
PspPI GGNCC 6 cut(s) 219, 277, 307, 644, 854, 1022
PstI CTGCAG 1 cut(s) 574
PstNI CAGNNNCTG 1 cut(s) 926
PsyI GACNNNGTC 2 cut(s) 251, 823
RsaI GTAC 3 cut(s) 107, 358, 665
RsaNI GTAC 3 cut(s) 106, 357, 664
SacI GAGCTC 2 cut(s) 30, 500
SalI GTCGAC 3 cut(s) 62, 176, 199
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 5 cut(s) 444, 570, 749, 847, 1044
Sau3AI GATC 1 cut(s) 574
Sau96I GGNCC 6 cut(s) 219, 277, 307, 644, 854, 1022
SchI GAGTC 3 cut(s) 242, 419, 661
ScrFI CCNGG 8 cut(s) 59, 217, 448, 648, 852, 902, 1002, 1030
SduI GDGCHC 5 cut(s) 30, 348, 500, 594, 961
SfaNI GCATC 2 cut(s) 557, 895
SfcI CTRYAG 1 cut(s) 570
SgrDI CGTCGACG 1 cut(s) 176
SinI GGWCC 5 cut(s) 277, 307, 644, 854, 1022
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SpeI ACTAGT 1 cut(s) 755
SphI GCATGC 1 cut(s) 706
Sse9I AATT 6 cut(s) 295, 379, 528, 658, 863, 1072
SsiI CCGC 5 cut(s) 84, 275, 434, 443, 872
SspMI CTAG 2 cut(s) 561, 756
SstI GAGCTC 2 cut(s) 30, 500
StyD4I CCNGG 8 cut(s) 57, 215, 446, 646, 850, 900, 1000, 1028
StyI CCWWGG 3 cut(s) 231, 489, 1053
TaaI ACNGT 4 cut(s) 167, 668, 719, 973
TaiI ACGT 2 cut(s) 117, 824
TaqI TCGA 8 cut(s) 63, 96, 117, 177, 200, 299, 455, 947
TaqII GACCGA 1 cut(s) 241
TasI AATT 6 cut(s) 295, 379, 528, 658, 863, 1072
TatI WGTACW 2 cut(s) 356, 663
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 2 cut(s) 183, 283
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 1 cut(s) 629
TseFI GTSAC 2 cut(s) 412, 620
TseI GCWGC 4 cut(s) 569, 748, 846, 1043
Tsp45I GTSAC 2 cut(s) 412, 620
TspDTI ATGAA 3 cut(s) 491, 669, 1102
TspGWI ACGGA 3 cut(s) 195, 389, 482
TspRI CASTG 1 cut(s) 629
Tth111I GACNNNGTC 2 cut(s) 251, 823
VpaK11BI GGWCC 5 cut(s) 277, 307, 644, 854, 1022
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 1 cut(s) 658
XceI RCATGY 1 cut(s) 706
XmiI GTMKAC 6 cut(s) 18, 63, 177, 200, 255, 968
XspI CTAG 2 cut(s) 561, 756
ZraI GACGTC 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.