Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010748

Physical Location & Seq

Genomic Coordinates Reverse (-)

7828326 .. 7830424

Gene Structure 2099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCTTAAAGAAACACTAAAATGGAGGGCTCAATACAAACCTGAGGAGATTCGATGGGAGGAGATAGCACGAGAAGCTGAGACCGGAAAAATATACCGAGCTAATTGTACCGATAAGTATGGAAGAACAGTTCTTGTTATGAGACCAAGTTGCCAGAATACAAAATCATATAAAGGGCAGATTAGAATCTTGGTGTACTGTATGGAAAATGCAATCTTGAACCTACCAGATAACCAAGAGCAAATGGTTTGGCTAATCGATTTTCACGGTTTCAACATGTCTCATATCTCCTTGAAAGTGTCTCGAGAAACCGCTCATGTGTTACAAGAACATTACCCTGAACGCTTAGGCTTGGCCATTGTATACAACCCGCCTAAGATTTTTGAGTCGTTTTATAAGATGGTGAAACCATTTTTAGAGCCAAAGACCAGCAACAAGGTGAAATTTGTCTACTCAGATGATAACCTCAGCAACAAGCTTCTGGAGGATCTTTTCGATATGGAGCAACTCGAGGTTGCATTTGGTGGAAAAAACAGCGATGCGGGTTTCAATTTTGAGAAATATGCTGAGAGAATGAGAGAGGATGATTTGAAGTTCTATGGAAACACCACAGTGTCATCAACCTCAGCTCATTTGACTAACTCAGATTCTGAAGTTTCAGACTCTGAGATGAAGTATTTGGAGGACAAAGAAGATGAGACTATAGAGAATGGAACTTTGCAATCTCCTTTAGATACAACAAAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

249

Amino Acids

28.99

Weight (kDa)

5.22

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	28 - 176	5.3e-36	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	41 - 156	9.4e-10	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22180 AT1G22180 AT1G22180 AT1G22180
malus_domestica	MD12G1015100.v1.1 MD14G1013100.v1.1
prunus_persica	Prupe.7G025600_v2.0.a1
pyrus_communis	pycom12g01230 pycom14g01110
rosa_chinensis	RchiOBHm_Chr3g0495481
rosa_laevigata	RLG00000022618
rosa_multiflora	Rmu_sc0004755.1_g000029 Rmu_sc0005599.1_g000007
rosa_roxburghii	Rroxscaffold_6G00390500
rosa_rugosa	Rorug03G0273800
rosa_samantha	Rh3AG321300 Rh3BG356600 Rh3CG353400 Rh3DG355900
rosa_wichuraiana	Rw3G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AccBSI	CCGCTC	1 cut(s)	314
AccI	GTMKAC	2 cut(s)	363, 450
AciI	CCGC	3 cut(s)	312, 371, 542
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	2 cut(s)	109, 197
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	5 cut(s)	220, 274, 295, 550, 592
AleI	CACNNNNGTG	1 cut(s)	611
AloI	GAACNNNNNNTCC	2 cut(s)	114, 146
AluBI	AGCT	4 cut(s)	77, 101, 478, 629
AluI	AGCT	4 cut(s)	77, 101, 478, 629
Alw26I	GTCTC	5 cut(s)	74, 136, 285, 306, 692
AlwI	GGATC	1 cut(s)	495
AlwNI	CAGNNNCTG	2 cut(s)	650, 665
Ama87I	CYCGRG	2 cut(s)	303, 509
AoxI	GGCC	1 cut(s)	354
ApoI	RAATTY	1 cut(s)	443
AsuHPI	GGTGA	2 cut(s)	415, 451
AvaI	CYCGRG	2 cut(s)	303, 509
AxyI	CCTNAGG	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	31
BauI	CACGAG	1 cut(s)	69
BbvCI	CCTCAGC	2 cut(s)	467, 625
BccI	CCATC	2 cut(s)	48, 394
BcoDI	GTCTC	5 cut(s)	74, 136, 285, 306, 692
BfmI	CTRYAG	1 cut(s)	702
BmeT110I	CYCGRG	2 cut(s)	303, 509
BmsI	GCATC	1 cut(s)	529
BpmI	CTGGAG	1 cut(s)	503
Bpu10I	CCTNAGC	3 cut(s)	346, 467, 625
Bsa29I	ATCGAT	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	185
BsaI	GGTCTC	2 cut(s)	74, 136
BsaWI	WCCGGW	1 cut(s)	83
Bse21I	CCTNAGG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	258
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	185
BseMII	CTCAG	8 cut(s)	33, 69, 468, 481, 558, 639, 657, 657
BseRI	GAGGAG	2 cut(s)	59, 74
BshFI	GGCC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	258
BsiHKCI	CYCGRG	2 cut(s)	303, 509
BsiSI	CCGG	1 cut(s)	84
BsmAI	GTCTC	5 cut(s)	74, 136, 285, 306, 692
BsnI	GGCC	1 cut(s)	356
Bso31I	GGTCTC	2 cut(s)	74, 136
BsoBI	CYCGRG	2 cut(s)	303, 509
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	487
BspACI	CCGC	3 cut(s)	312, 371, 542
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	8 cut(s)	34, 70, 467, 480, 559, 638, 656, 658
BspDI	ATCGAT	1 cut(s)	258
BspPI	GGATC	1 cut(s)	495
BspTNI	GGTCTC	2 cut(s)	74, 136
BsrBI	CCGCTC	1 cut(s)	314
BssMI	GATC	1 cut(s)	487
BssNAI	GTATAC	1 cut(s)	364
BssSI	CACGAG	1 cut(s)	69
Bst1107I	GTATAC	1 cut(s)	364
Bst2BI	CACGAG	1 cut(s)	69
Bst4CI	ACNGT	4 cut(s)	130, 200, 269, 613
BstF5I	GGATG	1 cut(s)	589
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	5 cut(s)	74, 136, 285, 306, 692
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	702
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BstZ17I	GTATAC	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	258
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	356
BsuTUI	ATCGAT	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	552
BtsCI	GGATG	1 cut(s)	589
BtsIMutI	CAGTG	1 cut(s)	618
CaiI	CAGNNNCTG	2 cut(s)	650, 665
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	108, 196
CviAII	CATG	2 cut(s)	277, 317
CviJI	RGCY	9 cut(s)	29, 77, 101, 253, 351, 356, 421, 478, 629
CviKI_1	RGCY	9 cut(s)	29, 77, 101, 253, 351, 356, 421, 478, 629
CviQI	GTAC	2 cut(s)	108, 196
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	31
Eco31I	GGTCTC	2 cut(s)	74, 136
Eco57I	CTGAAG	1 cut(s)	672
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	2 cut(s)	303, 509
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	2 cut(s)	280, 320
FatI	CATG	2 cut(s)	276, 316
FauI	CCCGC	2 cut(s)	378, 535
FblI	GTMKAC	2 cut(s)	363, 450
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	2 cut(s)	280, 320
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	5 cut(s)	49, 186, 386, 647, 662
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	2 cut(s)	415, 451
Hpy166II	GTNNAC	3 cut(s)	196, 364, 451
Hpy188I	TCNGA	5 cut(s)	457, 646, 652, 661, 667
Hpy188III	TCNNGA	4 cut(s)	217, 303, 305, 482
Hpy8I	GTNNAC	3 cut(s)	196, 364, 451
HpyCH4III	ACNGT	4 cut(s)	130, 200, 269, 613
HpyCH4V	TGCA	3 cut(s)	212, 518, 721
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	280, 320
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	1 cut(s)	502
LpnPI	CCDG	7 cut(s)	54, 97, 167, 240, 351, 442, 467
LweI	GCATC	1 cut(s)	529
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	1 cut(s)	489
MbiI	CCGCTC	1 cut(s)	314
MboI	GATC	1 cut(s)	487
MboII	GAAGA	2 cut(s)	135, 704
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	3 cut(s)	103, 443, 550
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	2 cut(s)	395, 656
MnlI	CCTC	9 cut(s)	18, 37, 52, 476, 478, 505, 574, 634, 676
Mox20I	TGGCCA	1 cut(s)	356
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	2 cut(s)	19, 611
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	2 cut(s)	280, 320
NspI	RCATGY	1 cut(s)	280
OliI	CACNNNNGTG	1 cut(s)	611
PaeR7I	CTCGAG	2 cut(s)	303, 509
PciI	ACATGT	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	49, 186, 647
PleI	GAGTC	2 cut(s)	394, 656
PpsI	GAGTC	2 cut(s)	394, 656
PscI	ACATGT	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	396
PspXI	VCTCGAGB	1 cut(s)	509
PstNI	CAGNNNCTG	2 cut(s)	650, 665
PsuI	RGATCY	1 cut(s)	487
RsaI	GTAC	2 cut(s)	109, 197
RsaNI	GTAC	2 cut(s)	108, 196
RseI	CAYNNNNRTG	2 cut(s)	19, 611
SaqAI	TTAA	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	487
SchI	GAGTC	2 cut(s)	395, 656
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	702
Sfr274I	CTCGAG	2 cut(s)	303, 509
SlaI	CTCGAG	2 cut(s)	303, 509
SmiMI	CAYNNNNRTG	2 cut(s)	19, 611
SmlI	CTYRAG	2 cut(s)	303, 509
SmoI	CTYRAG	2 cut(s)	303, 509
Sse9I	AATT	3 cut(s)	103, 443, 550
SsiI	CCGC	3 cut(s)	312, 371, 542
TaaI	ACNGT	4 cut(s)	130, 200, 269, 613
TaqI	TCGA	5 cut(s)	52, 258, 304, 495, 510
TasI	AATT	3 cut(s)	103, 443, 550
TatI	WGTACW	1 cut(s)	195
TfiI	GAWTC	3 cut(s)	49, 186, 647
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	618
TspDTI	ATGAA	1 cut(s)	686
TspRI	CASTG	1 cut(s)	618
XapI	RAATTY	1 cut(s)	443
XceI	RCATGY	1 cut(s)	280
XhoI	CTCGAG	2 cut(s)	303, 509
XmiI	GTMKAC	2 cut(s)	363, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.