Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005599.1

Orthogroup ID

OG0010748

Physical Location & Seq

Genomic Coordinates Reverse (-)

36245 .. 36688

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005599.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgcagatggtaaagccattttttgagcctaaaacattcaagaaagtgaagtttgtgtactctgataacccacagagcctgaagacaatggcagagcttttcgatatagataagttggatgctgcatttggtggcagaaatgcatgtggttttgactatgaagcctatgcacaaagaatgaaagaagatgacaagaaaatgtgtgatttcattgagactggttgttctccatctcttcaaccatcaattatgtctgaattgcagcagtccgattcagtggcttctgaccctggttctgagggctctgatgaagcagctggcttatcatccggtgacgaagcacctgctgcttcttcaaatattattgatgacaaaatgcaacaagttgaaccccgtcaaaataccagtgacgttgcaaatggtgacacaaagaaacaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

147

Amino Acids

16.11

Weight (kDa)

4.5

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22180 AT1G22180 AT1G22180 AT1G22180
malus_domestica	MD12G1015100.v1.1 MD14G1013100.v1.1
prunus_persica	Prupe.7G025600_v2.0.a1
pyrus_communis	pycom12g01230 pycom14g01110
rosa_chinensis	RchiOBHm_Chr3g0495481
rosa_laevigata	RLG00000022618
rosa_multiflora	Rmu_sc0004755.1_g000029 Rmu_sc0005599.1_g000007
rosa_roxburghii	Rroxscaffold_6G00390500
rosa_rugosa	Rorug03G0273800
rosa_samantha	Rh3AG321300 Rh3BG356600 Rh3CG353400 Rh3DG355900
rosa_wichuraiana	Rw3G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	59
AgsI	TTSAA	4 cut(s)	40, 239, 357, 389
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	2 cut(s)	97, 317
AluI	AGCT	2 cut(s)	97, 317
Alw26I	GTCTC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	79
ApeKI	GCWGC	4 cut(s)	122, 262, 314, 347
AsuHPI	GGTGA	2 cut(s)	344, 434
BanII	GRGCYC	1 cut(s)	305
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	4 cut(s)	109, 274, 326, 334
BccI	CCATC	2 cut(s)	238, 250
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	4 cut(s)	123, 263, 315, 348
BlsI	GCNGC	4 cut(s)	124, 264, 316, 349
Bme1390I	CCNGG	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	223, 405
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	2 cut(s)	124, 326
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	2 cut(s)	223, 405
BseXI	GCAGC	4 cut(s)	109, 274, 326, 334
BsiSI	CCGG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	223, 405
BssECI	CCNNGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	124, 326
BstMAI	GTCTC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	4 cut(s)	109, 274, 326, 334
BstV2I	GAAGAC	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	124, 326
BtsIMutI	CAGTG	2 cut(s)	282, 412
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	319
CaiI	CAGNNNCTG	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	9 cut(s)	16, 28, 78, 97, 164, 281, 303, 317, 321
CviKI_1	RGCY	9 cut(s)	16, 28, 78, 97, 164, 281, 303, 317, 321
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	305
FaeI	CATG	1 cut(s)	147
FaiI	YATR	5 cut(s)	107, 145, 159, 168, 251
FatI	CATG	1 cut(s)	143
Fnu4HI	GCNGC	4 cut(s)	123, 263, 315, 348
FokI	GGATG	2 cut(s)	131, 313
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	4 cut(s)	123, 263, 315, 348
GluI	GCNGC	4 cut(s)	123, 263, 315, 348
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	1 cut(s)	147
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	2 cut(s)	344, 434
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	6 cut(s)	64, 256, 271, 286, 298, 307
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	7 cut(s)	4, 125, 143, 170, 262, 379, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	1 cut(s)	147
LpnPI	CCDG	8 cut(s)	92, 204, 276, 303, 303, 343, 357, 418
Lsp1109I	GCAGC	4 cut(s)	109, 274, 326, 334
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	3 cut(s)	332, 407, 422
MboII	GAAGA	4 cut(s)	94, 197, 227, 345
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	2 cut(s)	246, 257
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	1 cut(s)	292
Mph1103I	ATGCAT	1 cut(s)	145
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	347
NlaIII	CATG	1 cut(s)	147
NmuCI	GTSAC	3 cut(s)	332, 407, 422
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	4 cut(s)	124, 264, 316, 349
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SatI	GCNGC	4 cut(s)	123, 263, 315, 348
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	4 cut(s)	99, 319, 346, 414
SfaNI	GCATC	1 cut(s)	109
Sse9I	AATT	2 cut(s)	246, 257
SspI	AATATT	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	289
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	246, 257
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	272
TscAI	CASTG	2 cut(s)	282, 412
TseFI	GTSAC	3 cut(s)	332, 407, 422
TseI	GCWGC	4 cut(s)	122, 262, 314, 347
Tsp45I	GTSAC	3 cut(s)	332, 407, 422
TspDTI	ATGAA	4 cut(s)	174, 194, 199, 324
TspRI	CASTG	2 cut(s)	282, 412
XceI	RCATGY	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.