Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010748

Physical Location & Seq

Genomic Coordinates Forward (+)

43293242 .. 43295957

Gene Structure 2716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG355900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTCATTCAAAAAGCAGCGGGAAAGTACGATAGAGAAAACTTTGTTACCAGATGAGCAGCGAGCCAAGATTGATGAAGTCAAGAAGATGATAGGCCCTATTGTTGATAAGCTACCAATGCTTTGTTCAGAAGCAGAAATATCAAGGTACCTTAGAGCGCGAAACTGGAATACAAAGAAGGCAGGAAAGATGTTGAAAGACTCCATAAAATGGAGACTGGAATATAAGCCAGAGAAGATTCGCTGGGAAAATGTTGCTCATGAAGCAGAGACGGGAAAAATCTACAAAGCCAGTTACTCTGACAAGTATGGAAGGACAGTTCTTATAATGAGACCTGGTTTTCAGAACACAAGCGCGGTAAATGAACAGATCTTATATTTGGTATATTGCATGGAGAATGCCATAAATTCAAATCCAGATCACGAGCAGATGGTGTGGCTGATCAATTTCCAACTATGGAACACATCAAGTATATCATTGAAAGTGACTAGGGAAACAGCAAAGGTCCTGCAGAATCATTATCCTGAGAGATTGGGCCTTGGCATCCTTTATAATCCCCCAAAAATATTTGAGTCATTTTGGACGATGGTAAAGCCATTTTTTGAGCCTAAAACATTCAAGAAAGTGAAGTTTGTGTACTCTGATAACCCACAGAGCCTGAAGACAATGGCAGAGCTTTTCGATATAGATAAGTTGGATGCTGCATTTGGTGGCAGAAATGCATGTGGTTTTGACTATGAAGCCTATGCACAAAGAATGAAAGAAGATGACAAGAAAATGTGTGATTTCATTGAGACTGGTTGTTCTCCATCTCTTCAACCATCAATTATGTCTGAATTGCAGCAGTCCGATTTAGTGGCTTCTGACCCTGGTTCTGAGGGCTCTGATGAAGCAGCTGGCTTATCATCCGGTGACGAAGCACCTGCTGCTTCTTCAAATATTATTGATGACAAAATGCAACAAGTTGAACCCCGTCAAAATACCAGTGACGTTGCAAATGGTGACACAAAGAAACAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

340

Amino Acids

38.81

Weight (kDa)

6.4

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	90 - 238	8.1e-30	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	104 - 237	1e-06	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22180 AT1G22180 AT1G22180 AT1G22180
malus_domestica	MD12G1015100.v1.1 MD14G1013100.v1.1
prunus_persica	Prupe.7G025600_v2.0.a1
pyrus_communis	pycom12g01230 pycom14g01110
rosa_chinensis	RchiOBHm_Chr3g0495481
rosa_laevigata	RLG00000022618
rosa_multiflora	Rmu_sc0004755.1_g000029 Rmu_sc0005599.1_g000007
rosa_roxburghii	Rroxscaffold_6G00390500
rosa_rugosa	Rorug03G0273800
rosa_samantha	Rh3AG321300 Rh3BG356600 Rh3CG353400 Rh3DG355900
rosa_wichuraiana	Rw3G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	326, 552
AarI	CACCTGC	1 cut(s)	931
Acc36I	ACCTGC	1 cut(s)	931
Acc65I	GGTACC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	147
AccB7I	CCANNNNNTGG	1 cut(s)	210
AccII	CGCG	2 cut(s)	160, 356
AciI	CCGC	2 cut(s)	19, 356
AcsI	RAATTY	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	3 cut(s)	28, 149, 638
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	8 cut(s)	10, 196, 411, 481, 619, 818, 936, 968
AjnI	CCWGG	2 cut(s)	334, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	109, 141
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	3 cut(s)	112, 676, 896
AluI	AGCT	3 cut(s)	112, 676, 896
Alw26I	GTCTC	4 cut(s)	208, 263, 325, 788
AlwNI	CAGNNNCTG	1 cut(s)	658
AoxI	GGCC	2 cut(s)	94, 535
ApeKI	GCWGC	6 cut(s)	16, 58, 701, 841, 893, 926
ApoI	RAATTY	1 cut(s)	406
Asp718I	GGTACC	1 cut(s)	147
AspLEI	GCGC	2 cut(s)	160, 356
AspS9I	GGNCC	3 cut(s)	95, 505, 535
AsuHPI	GGTGA	2 cut(s)	923, 1013
AvaII	GGWCC	1 cut(s)	505
BanI	GGYRCC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	884
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
BauI	CACGAG	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	668
BbvI	GCAGC	6 cut(s)	28, 70, 688, 853, 905, 913
BccI	CCATC	4 cut(s)	424, 580, 817, 829
BcgI	CGANNNNNNTGC	2 cut(s)	905, 939
BciT130I	CCWGG	2 cut(s)	336, 870
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	4 cut(s)	208, 263, 325, 788
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	931
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	6 cut(s)	17, 59, 702, 842, 894, 927
BlsI	GCNGC	6 cut(s)	18, 60, 703, 843, 895, 928
Bme1390I	CCNGG	2 cut(s)	336, 870
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	3 cut(s)	95, 505, 535
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	2 cut(s)	336, 870
BmsI	GCATC	2 cut(s)	552, 688
BpiI	GAAGAC	1 cut(s)	668
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	538, 868
BsaWI	WCCGGW	1 cut(s)	908
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	5 cut(s)	170, 222, 291, 802, 984
BseBI	CCWGG	2 cut(s)	336, 870
BseDI	CCNNGG	2 cut(s)	538, 868
BseGI	GGATG	3 cut(s)	543, 703, 905
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	516, 867
BseNI	ACTGG	5 cut(s)	170, 222, 291, 802, 984
BseXI	GCAGC	6 cut(s)	28, 70, 688, 853, 905, 913
BseYI	CCCAGC	1 cut(s)	243
Bsh1236I	CGCG	2 cut(s)	160, 356
BshFI	GGCC	2 cut(s)	96, 537
BshNI	GGYRCC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	909
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	4 cut(s)	208, 263, 325, 788
BsmBI	CGTCTC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	2 cut(s)	96, 537
Bso31I	GGTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	884
Bsp143I	GATC	3 cut(s)	369, 418, 441
BspACI	CCGC	2 cut(s)	19, 356
BspANI	GGCC	2 cut(s)	96, 537
BspCNI	CTCAG	2 cut(s)	517, 868
BspFNI	CGCG	2 cut(s)	160, 356
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	149
BspMAI	CTGCAG	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	931
BspT107I	GGYRCC	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	325
BsrI	ACTGG	5 cut(s)	170, 222, 291, 802, 984
BssECI	CCNNGG	2 cut(s)	538, 868
BssMI	GATC	3 cut(s)	369, 418, 441
BssSI	CACGAG	1 cut(s)	422
BssT1I	CCWWGG	1 cut(s)	538
Bst2BI	CACGAG	1 cut(s)	422
Bst2UI	CCWGG	2 cut(s)	336, 870
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	819
BstAPI	GCANNNNNTGC	1 cut(s)	926
BstC8I	GCNNGC	2 cut(s)	63, 898
BstDEI	CTNAG	3 cut(s)	152, 525, 876
BstF5I	GGATG	3 cut(s)	543, 703, 905
BstFNI	CGCG	2 cut(s)	160, 356
BstHHI	GCGC	2 cut(s)	160, 356
BstKTI	GATC	3 cut(s)	372, 421, 444
BstMAI	GTCTC	4 cut(s)	208, 263, 325, 788
BstMBI	GATC	3 cut(s)	369, 418, 441
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 263, 926
BstNI	CCWGG	2 cut(s)	336, 870
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	2 cut(s)	334, 868
BstSFI	CTRYAG	1 cut(s)	509
BstUI	CGCG	2 cut(s)	160, 356
BstV1I	GCAGC	6 cut(s)	28, 70, 688, 853, 905, 913
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	96, 537
BtsCI	GGATG	3 cut(s)	543, 703, 905
BtsIMutI	CAGTG	1 cut(s)	991
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	2 cut(s)	63, 898
CaiI	CAGNNNCTG	1 cut(s)	658
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	2 cut(s)	160, 356
Cfr13I	GGNCC	3 cut(s)	95, 505, 535
CsiI	ACCWGGT	1 cut(s)	334
Csp6I	GTAC	3 cut(s)	27, 148, 637
CviAII	CATG	3 cut(s)	260, 391, 723
CviQI	GTAC	3 cut(s)	27, 148, 637
DdeI	CTNAG	3 cut(s)	152, 525, 876
DpnI	GATC	3 cut(s)	371, 420, 443
DpnII	GATC	3 cut(s)	369, 418, 441
Eam1104I	CTCTTC	1 cut(s)	819
EarI	CTCTTC	1 cut(s)	819
Eco130I	CCWWGG	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	884
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	680
EcoO109I	RGGNCCY	2 cut(s)	95, 505
EcoRII	CCWGG	2 cut(s)	334, 868
EcoT14I	CCWWGG	1 cut(s)	538
EcoT22I	ATGCAT	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	884
ErhI	CCWWGG	1 cut(s)	538
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	3 cut(s)	263, 394, 726
FatI	CATG	3 cut(s)	259, 390, 722
FauI	CCCGC	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	6 cut(s)	17, 59, 702, 842, 894, 927
FokI	GGATG	3 cut(s)	530, 710, 892
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	6 cut(s)	17, 59, 702, 842, 894, 927
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	2 cut(s)	159, 355
GluI	GCNGC	6 cut(s)	17, 59, 702, 842, 894, 927
GsaI	CCCAGC	1 cut(s)	247
HaeIII	GGCC	2 cut(s)	96, 537
HapII	CCGG	1 cut(s)	909
HhaI	GCGC	2 cut(s)	160, 356
Hin1II	CATG	3 cut(s)	263, 394, 726
Hin6I	GCGC	2 cut(s)	158, 354
HinP1I	GCGC	2 cut(s)	158, 354
HinfI	GANTC	4 cut(s)	200, 238, 514, 572
HpaII	CCGG	1 cut(s)	909
HphI	GGTGA	2 cut(s)	923, 1013
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	9 cut(s)	130, 301, 345, 643, 835, 850, 865, 877, 886
Hpy188III	TCNNGA	6 cut(s)	82, 260, 416, 422, 524, 619
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	2 cut(s)	172, 306
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	990
HpyCH4V	TGCA	8 cut(s)	390, 511, 704, 722, 749, 841, 958, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 263, 926
HpyF3I	CTNAG	3 cut(s)	152, 525, 876
HpySE526I	ACGT	1 cut(s)	990
Hsp92II	CATG	3 cut(s)	263, 394, 726
HspAI	GCGC	2 cut(s)	158, 354
KpnI	GGTACC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	369, 418, 441
Lsp1109I	GCAGC	6 cut(s)	28, 70, 688, 853, 905, 913
LweI	GCATC	2 cut(s)	552, 688
MabI	ACCWGGT	1 cut(s)	334
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	1 cut(s)	990
MaeIII	GTNAC	6 cut(s)	45, 293, 484, 911, 986, 1001
MalI	GATC	3 cut(s)	371, 420, 443
MboI	GATC	3 cut(s)	369, 418, 441
MboII	GAAGA	6 cut(s)	97, 247, 673, 776, 806, 924
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	884
MluCI	AATT	4 cut(s)	406, 445, 825, 836
MlyI	GAGTC	2 cut(s)	194, 581
MmeI	TCCRAC	2 cut(s)	475, 675
MnlI	CCTC	1 cut(s)	871
Mph1103I	ATGCAT	1 cut(s)	724
MspA1I	CMGCKG	2 cut(s)	19, 896
MspI	CCGG	1 cut(s)	909
MspR9I	CCNGG	2 cut(s)	336, 870
Mva1269I	GAATGC	1 cut(s)	403
MvaI	CCWGG	2 cut(s)	336, 870
MvnI	CGCG	2 cut(s)	160, 356
MwoI	GCNNNNNNNGC	3 cut(s)	118, 263, 926
NdeII	GATC	3 cut(s)	369, 418, 441
NlaIII	CATG	3 cut(s)	263, 394, 726
NlaIV	GGNNCC	1 cut(s)	149
NmuCI	GTSAC	4 cut(s)	484, 911, 986, 1001
NsiI	ATGCAT	1 cut(s)	724
NspI	RCATGY	1 cut(s)	726
PagI	TCATGA	1 cut(s)	259
PaqCI	CACCTGC	1 cut(s)	931
PctI	GAATGC	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	238, 514
PflMI	CCANNNNNTGG	1 cut(s)	210
PkrI	GCNGC	6 cut(s)	18, 60, 703, 843, 895, 928
PleI	GAGTC	2 cut(s)	194, 580
PpsI	GAGTC	2 cut(s)	194, 580
PpuMI	RGGWCCY	1 cut(s)	505
PsiI	TTATAA	2 cut(s)	326, 552
Psp5II	RGGWCCY	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	334, 868
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	2 cut(s)	334, 868
PspN4I	GGNNCC	1 cut(s)	149
PspPI	GGNCC	3 cut(s)	95, 505, 535
PspPPI	RGGWCCY	1 cut(s)	505
PstI	CTGCAG	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	658
PsuI	RGATCY	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	3 cut(s)	28, 149, 638
RsaNI	GTAC	3 cut(s)	27, 148, 637
SatI	GCNGC	6 cut(s)	17, 59, 702, 842, 894, 927
Sau3AI	GATC	3 cut(s)	369, 418, 441
Sau96I	GGNCC	3 cut(s)	95, 505, 535
SchI	GAGTC	2 cut(s)	194, 581
ScrFI	CCNGG	2 cut(s)	336, 870
SduI	GDGCHC	1 cut(s)	884
SetI	ASST	9 cut(s)	114, 149, 153, 337, 507, 678, 898, 925, 993
SexAI	ACCWGGT	1 cut(s)	334
SfaNI	GCATC	2 cut(s)	552, 688
SfcI	CTRYAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	505
Sse9I	AATT	4 cut(s)	406, 445, 825, 836
SsiI	CCGC	2 cut(s)	19, 356
SspI	AATATT	2 cut(s)	567, 940
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	334, 868
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	1 cut(s)	993
TaqI	TCGA	1 cut(s)	681
TasI	AATT	4 cut(s)	406, 445, 825, 836
TatI	WGTACW	1 cut(s)	636
TfiI	GAWTC	2 cut(s)	238, 514
TscAI	CASTG	1 cut(s)	991
TseFI	GTSAC	4 cut(s)	484, 911, 986, 1001
TseI	GCWGC	6 cut(s)	16, 58, 701, 841, 893, 926
Tsp45I	GTSAC	4 cut(s)	484, 911, 986, 1001
TspDTI	ATGAA	7 cut(s)	90, 276, 378, 753, 773, 778, 903
TspRI	CASTG	1 cut(s)	991
Van91I	CCANNNNNTGG	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	1 cut(s)	406
XceI	RCATGY	1 cut(s)	726
XspI	CTAG	1 cut(s)	489
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.