Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010748

Physical Location & Seq

Genomic Coordinates Forward (+)

42468011 .. 42472595

Gene Structure 4585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG356600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGATAGGCCCTATTGTTGATAAGCTACCAATGCTTTGTTCAGAAGCAGAAATATCAAGGTACCTTAGAGCGCGAAACTGGAATACAAAGAAGGCAGGAAAGATGTTGAAAGACTCCATAAAATGGAGACTGGAATACAAGCCAGAGAAGATTCGCTGGGAAAATGTTGCTCATGAAGCAGAGACGGGAAAAATCTACAAAGCCAGTTACTCTGACAAGTATGGAAGGACAGTTCTTATAATGAGACCTGGTTTTCAGAACACAAGCGCGGTAAATGAACAGATCTTATATTTGGTATATTGCATGGAGAATGCCATAAATTCAAATCCAGATCACGAGCAGATGGTGTGGCTGATCAATTTCCAACTATGGAACACATCAAGTATATCATTGAAAGTGACTAGGGAAACAGCAAAGGTCCTGCAGAATCATTATCCTGAGAGATTGGCCCTTGGCATCCTTTATAATCCCCCAAAAATATTTGAGTCATTTTGGACGATGGTAAAGCCATTTTTTGAGCCTAAAACATTCAAGAAAGTGAAGTTTGTGTACTCTGATAACCCACAGAGCCTGAAGACAATGGCAGAGCTTTTCGATATAGAAAAGTTGGATGCTGCATTTGGTGGCAGAAATGCACGTGGTTTTGACTATGAAGCCTATGTACAAAGAATGAAAGAAGATGACAAGAAAATGTGTGATTTCATTGAGACTGGTTGTTCTCCATCTCTTCAACCATCAATTATGTCTGAATTGCAGCAGTCCGATTCAGTGGCTTCTGACCCTGGTTCTGAGGGCTCTGATGAAGCAGCTGGCTTATCATCCGGTGACGAAGCACCTGCTGCTTCTTCAAATATTATTGATGACAAAATGCAACAAGATGAACCCCGTCAAAATACCAGTGACGTTGCAAATGGTGACACAAAGAAACAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

311

Amino Acids

35.45

Weight (kDa)

5.83

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	61 - 209	2.4e-29	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	75 - 208	1.1e-07	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22180 AT1G22180 AT1G22180 AT1G22180
malus_domestica	MD12G1015100.v1.1 MD14G1013100.v1.1
prunus_persica	Prupe.7G025600_v2.0.a1
pyrus_communis	pycom12g01230 pycom14g01110
rosa_chinensis	RchiOBHm_Chr3g0495481
rosa_laevigata	RLG00000022618
rosa_multiflora	Rmu_sc0004755.1_g000029 Rmu_sc0005599.1_g000007
rosa_roxburghii	Rroxscaffold_6G00390500
rosa_rugosa	Rorug03G0273800
rosa_samantha	Rh3AG321300 Rh3BG356600 Rh3CG353400 Rh3DG355900
rosa_wichuraiana	Rw3G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	239, 465
AarI	CACCTGC	1 cut(s)	844
Acc36I	ACCTGC	1 cut(s)	844
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	60
AccB7I	CCANNNNNTGG	1 cut(s)	123
AccII	CGCG	2 cut(s)	73, 269
AciI	CCGC	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	593
AcvI	CACGTG	1 cut(s)	638
AfaI	GTAC	3 cut(s)	62, 551, 663
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	6 cut(s)	109, 324, 394, 532, 731, 849
AjnI	CCWGG	2 cut(s)	247, 781
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AloI	GAACNNNNNNTCC	2 cut(s)	216, 248
AluBI	AGCT	3 cut(s)	25, 589, 809
AluI	AGCT	3 cut(s)	25, 589, 809
Alw26I	GTCTC	4 cut(s)	121, 176, 238, 701
AlwNI	CAGNNNCTG	1 cut(s)	571
AoxI	GGCC	2 cut(s)	7, 447
ApeKI	GCWGC	4 cut(s)	614, 754, 806, 839
ApoI	RAATTY	1 cut(s)	319
Asp718I	GGTACC	1 cut(s)	60
AspLEI	GCGC	2 cut(s)	73, 269
AspS9I	GGNCC	3 cut(s)	8, 418, 448
AsuHPI	GGTGA	2 cut(s)	836, 926
AvaII	GGWCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	797
BarI	GAAGNNNNNNTAC	4 cut(s)	533, 565, 645, 677
BauI	CACGAG	1 cut(s)	335
BbrPI	CACGTG	1 cut(s)	638
BbsI	GAAGAC	1 cut(s)	581
BbvI	GCAGC	4 cut(s)	601, 766, 818, 826
BccI	CCATC	4 cut(s)	337, 493, 730, 742
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	2 cut(s)	249, 783
BclI	TGATCA	1 cut(s)	354
BcoDI	GTCTC	4 cut(s)	121, 176, 238, 701
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	844
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	4 cut(s)	615, 755, 807, 840
BlsI	GCNGC	4 cut(s)	616, 756, 808, 841
Bme1390I	CCNGG	2 cut(s)	249, 783
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	3 cut(s)	8, 418, 448
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	2 cut(s)	249, 783
BmsI	GCATC	2 cut(s)	465, 601
BpiI	GAAGAC	1 cut(s)	581
BsaAI	YACGTR	1 cut(s)	638
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	451, 781
BsaWI	WCCGGW	1 cut(s)	821
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	5 cut(s)	83, 135, 204, 715, 897
BseBI	CCWGG	2 cut(s)	249, 783
BseDI	CCNNGG	2 cut(s)	451, 781
BseGI	GGATG	3 cut(s)	456, 616, 818
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	429, 780
BseNI	ACTGG	5 cut(s)	83, 135, 204, 715, 897
BseXI	GCAGC	4 cut(s)	601, 766, 818, 826
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	2 cut(s)	73, 269
BshFI	GGCC	2 cut(s)	9, 449
BshNI	GGYRCC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	822
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	4 cut(s)	121, 176, 238, 701
BsmBI	CGTCTC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	9, 449
Bso31I	GGTCTC	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp1407I	TGTACA	1 cut(s)	661
Bsp143I	GATC	3 cut(s)	282, 331, 354
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	2 cut(s)	9, 449
BspCNI	CTCAG	2 cut(s)	430, 781
BspFNI	CGCG	2 cut(s)	73, 269
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	62
BspMAI	CTGCAG	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	844
BspT107I	GGYRCC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	238
BsrGI	TGTACA	1 cut(s)	661
BsrI	ACTGG	5 cut(s)	83, 135, 204, 715, 897
BssECI	CCNNGG	2 cut(s)	451, 781
BssMI	GATC	3 cut(s)	282, 331, 354
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	451
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	2 cut(s)	249, 783
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	732
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstAUI	TGTACA	1 cut(s)	661
BstBAI	YACGTR	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	811
BstDEI	CTNAG	3 cut(s)	65, 438, 789
BstF5I	GGATG	3 cut(s)	456, 616, 818
BstFNI	CGCG	2 cut(s)	73, 269
BstHHI	GCGC	2 cut(s)	73, 269
BstKTI	GATC	3 cut(s)	285, 334, 357
BstMAI	GTCTC	4 cut(s)	121, 176, 238, 701
BstMBI	GATC	3 cut(s)	282, 331, 354
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 176, 839
BstNI	CCWGG	2 cut(s)	249, 783
BstSCI	CCNGG	2 cut(s)	247, 781
BstSFI	CTRYAG	1 cut(s)	422
BstUI	CGCG	2 cut(s)	73, 269
BstV1I	GCAGC	4 cut(s)	601, 766, 818, 826
BstV2I	GAAGAC	1 cut(s)	581
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	9, 449
BtsCI	GGATG	3 cut(s)	456, 616, 818
BtsIMutI	CAGTG	2 cut(s)	774, 904
BveI	ACCTGC	1 cut(s)	844
Cac8I	GCNNGC	1 cut(s)	811
CaiI	CAGNNNCTG	1 cut(s)	571
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	2 cut(s)	73, 269
Cfr13I	GGNCC	3 cut(s)	8, 418, 448
CsiI	ACCWGGT	1 cut(s)	247
Csp6I	GTAC	3 cut(s)	61, 550, 662
CviAII	CATG	2 cut(s)	173, 304
CviQI	GTAC	3 cut(s)	61, 550, 662
DdeI	CTNAG	3 cut(s)	65, 438, 789
DpnI	GATC	3 cut(s)	284, 333, 356
DpnII	GATC	3 cut(s)	282, 331, 354
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
Eco130I	CCWWGG	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	797
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	593
Eco72I	CACGTG	1 cut(s)	638
EcoO109I	RGGNCCY	2 cut(s)	8, 418
EcoRII	CCWGG	2 cut(s)	247, 781
EcoT14I	CCWWGG	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	451
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	2 cut(s)	176, 307
FatI	CATG	2 cut(s)	172, 303
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	615, 755, 807, 840
FokI	GGATG	3 cut(s)	443, 623, 805
FriOI	GRGCYC	1 cut(s)	797
Fsp4HI	GCNGC	4 cut(s)	615, 755, 807, 840
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	2 cut(s)	72, 268
GluI	GCNGC	4 cut(s)	615, 755, 807, 840
GsaI	CCCAGC	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	9, 449
HapII	CCGG	1 cut(s)	822
HhaI	GCGC	2 cut(s)	73, 269
Hin1II	CATG	2 cut(s)	176, 307
Hin6I	GCGC	2 cut(s)	71, 267
HinP1I	GCGC	2 cut(s)	71, 267
HinfI	GANTC	5 cut(s)	113, 151, 427, 485, 764
HpaII	CCGG	1 cut(s)	822
HphI	GGTGA	2 cut(s)	836, 926
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	9 cut(s)	43, 214, 258, 556, 748, 763, 778, 790, 799
Hpy188III	TCNNGA	5 cut(s)	173, 329, 335, 437, 532
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	2 cut(s)	85, 219
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	2 cut(s)	637, 903
HpyCH4V	TGCA	7 cut(s)	303, 424, 617, 635, 754, 871, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 176, 839
HpyF3I	CTNAG	3 cut(s)	65, 438, 789
HpySE526I	ACGT	2 cut(s)	637, 903
Hsp92II	CATG	2 cut(s)	176, 307
HspAI	GCGC	2 cut(s)	71, 267
KpnI	GGTACC	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	282, 331, 354
Lsp1109I	GCAGC	4 cut(s)	601, 766, 818, 826
LweI	GCATC	2 cut(s)	465, 601
MabI	ACCWGGT	1 cut(s)	247
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	2 cut(s)	637, 903
MaeIII	GTNAC	5 cut(s)	206, 397, 824, 899, 914
MalI	GATC	3 cut(s)	284, 333, 356
MboI	GATC	3 cut(s)	282, 331, 354
MboII	GAAGA	5 cut(s)	160, 586, 689, 719, 837
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	797
MluCI	AATT	4 cut(s)	319, 358, 738, 749
MlyI	GAGTC	2 cut(s)	107, 494
MmeI	TCCRAC	2 cut(s)	388, 588
MnlI	CCTC	1 cut(s)	784
MspA1I	CMGCKG	1 cut(s)	809
MspI	CCGG	1 cut(s)	822
MspR9I	CCNGG	2 cut(s)	249, 783
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	2 cut(s)	249, 783
MvnI	CGCG	2 cut(s)	73, 269
MwoI	GCNNNNNNNGC	3 cut(s)	31, 176, 839
NdeII	GATC	3 cut(s)	282, 331, 354
NlaIII	CATG	2 cut(s)	176, 307
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	4 cut(s)	397, 824, 899, 914
PagI	TCATGA	1 cut(s)	172
PaqCI	CACCTGC	1 cut(s)	844
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	151, 427, 764
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	616, 756, 808, 841
PleI	GAGTC	2 cut(s)	107, 493
PmaCI	CACGTG	1 cut(s)	638
PmlI	CACGTG	1 cut(s)	638
PpsI	GAGTC	2 cut(s)	107, 493
Ppu21I	YACGTR	1 cut(s)	638
PpuMI	RGGWCCY	1 cut(s)	418
PsiI	TTATAA	2 cut(s)	239, 465
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	247, 781
PspCI	CACGTG	1 cut(s)	638
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	2 cut(s)	247, 781
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	3 cut(s)	8, 418, 448
PspPPI	RGGWCCY	1 cut(s)	418
PstI	CTGCAG	1 cut(s)	426
PstNI	CAGNNNCTG	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	282
PvuII	CAGCTG	1 cut(s)	809
RsaI	GTAC	3 cut(s)	62, 551, 663
RsaNI	GTAC	3 cut(s)	61, 550, 662
SatI	GCNGC	4 cut(s)	615, 755, 807, 840
Sau3AI	GATC	3 cut(s)	282, 331, 354
Sau96I	GGNCC	3 cut(s)	8, 418, 448
SchI	GAGTC	2 cut(s)	107, 494
ScrFI	CCNGG	2 cut(s)	249, 783
SduI	GDGCHC	1 cut(s)	797
SexAI	ACCWGGT	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	465, 601
SfcI	CTRYAG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	418
Sse9I	AATT	4 cut(s)	319, 358, 738, 749
SsiI	CCGC	1 cut(s)	269
SspI	AATATT	2 cut(s)	480, 853
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	247, 781
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	2 cut(s)	640, 906
TaqI	TCGA	1 cut(s)	594
TasI	AATT	4 cut(s)	319, 358, 738, 749
TatI	WGTACW	2 cut(s)	549, 661
TfiI	GAWTC	3 cut(s)	151, 427, 764
TscAI	CASTG	2 cut(s)	774, 904
TseFI	GTSAC	4 cut(s)	397, 824, 899, 914
TseI	GCWGC	4 cut(s)	614, 754, 806, 839
Tsp45I	GTSAC	4 cut(s)	397, 824, 899, 914
TspDTI	ATGAA	7 cut(s)	189, 291, 666, 686, 691, 816, 894
TspRI	CASTG	2 cut(s)	774, 904
Van91I	CCANNNNNTGG	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	319
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.