Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010748

Physical Location & Seq

Genomic Coordinates Forward (+)

4115152 .. 4118983

Gene Structure 3832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G025600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTCATTCAAAAAGCGGGAAGGTACAATAGAGAAAGCTTTGACACAGGAAGAGCAGCTGCTCAAGATTTATGAAGTCAGACATATGATAGGTCCTATTGCTGATAAGCTACCAGCCATTTGTTCAGAAGAATCAATAGCAAGGTACCTAAGAGCACGGAACTGGAATACGAAGAAGGCAGGTAAGATGTTGAAAGAAACAATAAAATGGAGGATGGAGTACAAGCCAGAGAAGATCCGATGGGAAAACATTGCTCCTGAGGCGGAGACAGGAAAAATTTACAAAGCCAATTACGTTGACAAGTGTGGAAGGACCGTTCTTATCATGAGGCCTGGTTTTCAGAACACAAATGCAGTAAATGGGCAGATCATGTATTTAGTATATTGCATGGAGAATGCAATGTTGAATTTGAATTTAGATCAAGAACAGATGGTTTGGCTAATTGATTTTCAACGGTGGAGCTCATCAAGCATATCATTGAAGGTGACTAGGGAAACCGCTAAGGTCCTGCAGAATCATTACCCTGAGAGATTGGGCCTTGGTATCCTCTATAATCCACCAAAAATATTCGAGTCCTTTTGGACGATGGTAAAACCATTTCTAGAGCCCAAAACATACAAGAAGATGAAGTTTGTGTACTCTGACAACCCACAGAGCCAGAAGACAATGGAGGATCTTTTCCATATGGACAAGTTGGAATCTGCATTTGGTGGAAAAAATTCATTTGGTTTTGACTATCAAGCTTATGCACAAAGAATGAGGGAAGATGACAAGAAGATGTCTAGTTTTATTGACTCCGGTTGTTCGCCTTCAGTTATATCCGAGTTGCAGCAGTCAGATGCACTAACTTCTGACCATTGTTCTGAGGTCTCTGATGAAGGTGGCTGCTCATCATGTGATGAAGCAGCTTCTTCGAACTTAGACGTTGTTGATGAGAAGATACAAAGCCAACCACTTGACAGCAAAGATGTTGCAAATGGCAACACAACATTACCTAAAGAAATGCAAATGAGTGAGCTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

342

Amino Acids

39.13

Weight (kDa)

5.97

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22180 AT1G22180 AT1G22180 AT1G22180
malus_domestica	MD12G1015100.v1.1 MD14G1013100.v1.1
prunus_persica	Prupe.7G025600_v2.0.a1
pyrus_communis	pycom12g01230 pycom14g01110
rosa_chinensis	RchiOBHm_Chr3g0495481
rosa_laevigata	RLG00000022618
rosa_multiflora	Rmu_sc0004755.1_g000029 Rmu_sc0005599.1_g000007
rosa_roxburghii	Rroxscaffold_6G00390500
rosa_rugosa	Rorug03G0273800
rosa_samantha	Rh3AG321300 Rh3BG356600 Rh3CG353400 Rh3DG355900
rosa_wichuraiana	Rw3G028080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	170
Acc65I	GGTACC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	144
AciI	CCGC	3 cut(s)	16, 263, 498
AclWI	GGATC	2 cut(s)	229, 681
AcsI	RAATTY	4 cut(s)	276, 406, 412, 718
AcuI	CTGAAG	1 cut(s)	795
AfaI	GTAC	4 cut(s)	25, 146, 221, 638
AgsI	TTSAA	6 cut(s)	10, 193, 406, 412, 452, 481
AjnI	CCWGG	1 cut(s)	331
AjuI	GAANNNNNNNTTGG	2 cut(s)	690, 722
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	7 cut(s)	38, 58, 109, 462, 743, 908, 1018
AluI	AGCT	7 cut(s)	38, 58, 109, 462, 743, 908, 1018
Alw21I	GWGCWC	2 cut(s)	157, 464
Alw26I	GTCTC	2 cut(s)	260, 874
AlwI	GGATC	2 cut(s)	229, 681
AoxI	GGCC	2 cut(s)	329, 535
ApeKI	GCWGC	5 cut(s)	55, 58, 829, 885, 905
ApoI	RAATTY	4 cut(s)	276, 406, 412, 718
Asp700I	GAANNNNTTC	1 cut(s)	718
Asp718I	GGTACC	1 cut(s)	144
AspS9I	GGNCC	4 cut(s)	92, 312, 505, 535
AsuHPI	GGTGA	1 cut(s)	496
AsuII	TTCGAA	1 cut(s)	914
AvaII	GGWCC	3 cut(s)	92, 312, 505
AxyI	CCTNAGG	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	144
BanII	GRGCYC	2 cut(s)	464, 609
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	2 cut(s)	157, 464
BbvI	GCAGC	5 cut(s)	45, 67, 841, 872, 917
BccI	CCATC	4 cut(s)	208, 234, 424, 580
BcgI	CGANNNNNNTGC	2 cut(s)	894, 928
BciT130I	CCWGG	1 cut(s)	333
BciVI	GTATCC	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	260, 874
BfaI	CTAG	3 cut(s)	489, 602, 783
BfmI	CTRYAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	554
BisI	GCNGC	5 cut(s)	56, 59, 830, 886, 906
BlsI	GCNGC	5 cut(s)	57, 60, 831, 887, 907
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	3 cut(s)	92, 312, 505
BmgT120I	GGNCC	4 cut(s)	92, 312, 505, 535
BmiI	GGNNCC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	829
BpiI	GAAGAC	1 cut(s)	668
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu14I	TTCGAA	1 cut(s)	914
BpuEI	CTTGAG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	874
BsaJI	CCNNGG	1 cut(s)	538
BsaWI	WCCGGW	1 cut(s)	797
Bse1I	ACTGG	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	258
Bse3DI	GCAATG	2 cut(s)	249, 405
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	1 cut(s)	219
BseMI	GCAATG	2 cut(s)	249, 405
BseMII	CTCAG	3 cut(s)	249, 516, 855
BseNI	ACTGG	1 cut(s)	167
BseXI	GCAGC	5 cut(s)	45, 67, 841, 872, 917
BshFI	GGCC	2 cut(s)	331, 537
BshNI	GGYRCC	1 cut(s)	144
BsiHKAI	GWGCWC	2 cut(s)	157, 464
BsiSI	CCGG	1 cut(s)	798
BsmAI	GTCTC	2 cut(s)	260, 874
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	331, 537
Bso31I	GGTCTC	1 cut(s)	874
Bsp119I	TTCGAA	1 cut(s)	914
Bsp1286I	GDGCHC	3 cut(s)	157, 464, 609
Bsp143I	GATC	4 cut(s)	234, 366, 418, 673
BspACI	CCGC	3 cut(s)	16, 263, 498
BspANI	GGCC	2 cut(s)	331, 537
BspCNI	CTCAG	3 cut(s)	250, 517, 856
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	146
BspMAI	CTGCAG	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	2 cut(s)	229, 681
BspQI	GCTCTTC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	914
BspT107I	GGYRCC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	874
BsrDI	GCAATG	2 cut(s)	249, 405
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	4 cut(s)	234, 366, 418, 673
BssT1I	CCWWGG	1 cut(s)	538
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	316, 456
Bst6I	CTCTTC	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	914
BstC8I	GCNNGC	1 cut(s)	1020
BstDEI	CTNAG	6 cut(s)	149, 258, 501, 525, 864, 919
BstF5I	GGATG	1 cut(s)	219
BstKTI	GATC	4 cut(s)	237, 369, 421, 676
BstMAI	GTCTC	2 cut(s)	260, 874
BstMBI	GATC	4 cut(s)	234, 366, 418, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 468
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	509
BstV1I	GCAGC	5 cut(s)	45, 67, 841, 872, 917
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	2 cut(s)	234, 673
BstYI	RGATCY	2 cut(s)	234, 673
Bsu36I	CCTNAGG	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	331, 537
BtsCI	GGATG	1 cut(s)	219
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	1020
CciI	TCATGA	1 cut(s)	324
Cfr13I	GGNCC	4 cut(s)	92, 312, 505, 535
Csp6I	GTAC	4 cut(s)	24, 145, 220, 637
CviAII	CATG	5 cut(s)	325, 370, 388, 894, 1023
CviQI	GTAC	4 cut(s)	24, 145, 220, 637
DdeI	CTNAG	6 cut(s)	149, 258, 501, 525, 864, 919
DpnI	GATC	4 cut(s)	236, 368, 420, 675
DpnII	GATC	4 cut(s)	234, 366, 418, 673
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	538
Eco147I	AGGCCT	1 cut(s)	331
Eco24I	GRGCYC	2 cut(s)	464, 609
Eco31I	GGTCTC	1 cut(s)	874
Eco47I	GGWCC	3 cut(s)	92, 312, 505
Eco53kI	GAGCTC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	795
Eco81I	CCTNAGG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	462
EcoO109I	RGGNCCY	2 cut(s)	92, 505
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	538
EcoT38I	GRGCYC	2 cut(s)	464, 609
ErhI	CCWWGG	1 cut(s)	538
FaeI	CATG	5 cut(s)	328, 373, 391, 897, 1026
FatI	CATG	5 cut(s)	324, 369, 387, 893, 1022
FauI	CCCGC	1 cut(s)	9
FauNDI	CATATG	2 cut(s)	84, 684
Fnu4HI	GCNGC	5 cut(s)	56, 59, 830, 886, 906
FokI	GGATG	1 cut(s)	226
FriOI	GRGCYC	2 cut(s)	464, 609
Fsp4HI	GCNGC	5 cut(s)	56, 59, 830, 886, 906
FspBI	CTAG	3 cut(s)	489, 602, 783
GluI	GCNGC	5 cut(s)	56, 59, 830, 886, 906
HaeIII	GGCC	2 cut(s)	331, 537
HapII	CCGG	1 cut(s)	798
Hin1II	CATG	5 cut(s)	328, 373, 391, 897, 1026
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	2 cut(s)	36, 741
HinfI	GANTC	5 cut(s)	131, 514, 572, 698, 794
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	2 cut(s)	298, 637
Hpy188III	TCNNGA	5 cut(s)	64, 257, 325, 422, 602
Hpy8I	GTNNAC	2 cut(s)	298, 637
HpyAV	CCTTC	6 cut(s)	14, 169, 303, 475, 819, 872
HpyCH4III	ACNGT	2 cut(s)	316, 456
HpyCH4IV	ACGT	2 cut(s)	294, 924
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 468
HpyF3I	CTNAG	6 cut(s)	149, 258, 501, 525, 864, 919
HpySE526I	ACGT	2 cut(s)	294, 924
Hsp92II	CATG	5 cut(s)	328, 373, 391, 897, 1026
KpnI	GGTACC	1 cut(s)	148
Kzo9I	GATC	4 cut(s)	234, 366, 418, 673
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	2 cut(s)	259, 459
Lsp1109I	GCAGC	5 cut(s)	45, 67, 841, 872, 917
LweI	GCATC	1 cut(s)	829
MaeI	CTAG	3 cut(s)	489, 602, 783
MaeII	ACGT	2 cut(s)	294, 924
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	4 cut(s)	236, 368, 420, 675
MboI	GATC	4 cut(s)	234, 366, 418, 673
MflI	RGATCY	2 cut(s)	234, 673
MhlI	GDGCHC	3 cut(s)	157, 464, 609
MluCI	AATT	6 cut(s)	276, 289, 406, 412, 441, 718
MlyI	GAGTC	2 cut(s)	581, 788
MmeI	TCCRAC	1 cut(s)	675
MnlI	CCTC	7 cut(s)	204, 253, 321, 557, 664, 753, 859
MroXI	GAANNNNTTC	1 cut(s)	718
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	260, 468
NdeI	CATATG	2 cut(s)	84, 684
NdeII	GATC	4 cut(s)	234, 366, 418, 673
NlaIII	CATG	5 cut(s)	328, 373, 391, 897, 1026
NlaIV	GGNNCC	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	484
NspV	TTCGAA	1 cut(s)	914
PagI	TCATGA	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	45
PctI	GAATGC	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	718
PfeI	GAWTC	3 cut(s)	131, 514, 698
PkrI	GCNGC	5 cut(s)	57, 60, 831, 887, 907
PleI	GAGTC	2 cut(s)	580, 788
PpsI	GAGTC	2 cut(s)	580, 788
PpuMI	RGGWCCY	2 cut(s)	92, 505
Psp124BI	GAGCTC	1 cut(s)	464
Psp5II	RGGWCCY	2 cut(s)	92, 505
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	4 cut(s)	92, 312, 505, 535
PspPPI	RGGWCCY	2 cut(s)	92, 505
PstI	CTGCAG	1 cut(s)	513
PsuI	RGATCY	2 cut(s)	234, 673
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	4 cut(s)	25, 146, 221, 638
RsaNI	GTAC	4 cut(s)	24, 145, 220, 637
SacI	GAGCTC	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	45
SatI	GCNGC	5 cut(s)	56, 59, 830, 886, 906
Sau3AI	GATC	4 cut(s)	234, 366, 418, 673
Sau96I	GGNCC	4 cut(s)	92, 312, 505, 535
SchI	GAGTC	2 cut(s)	581, 788
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	3 cut(s)	157, 464, 609
SfaNI	GCATC	1 cut(s)	829
SfcI	CTRYAG	1 cut(s)	509
SfuI	TTCGAA	1 cut(s)	914
SinI	GGWCC	3 cut(s)	92, 312, 505
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	6 cut(s)	276, 289, 406, 412, 441, 718
SseBI	AGGCCT	1 cut(s)	331
SsiI	CCGC	3 cut(s)	16, 263, 498
SspI	AATATT	1 cut(s)	567
SspMI	CTAG	3 cut(s)	489, 602, 783
SstI	GAGCTC	1 cut(s)	464
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	2 cut(s)	316, 456
TaiI	ACGT	2 cut(s)	297, 927
TaqI	TCGA	2 cut(s)	570, 914
TasI	AATT	6 cut(s)	276, 289, 406, 412, 441, 718
TatI	WGTACW	2 cut(s)	219, 636
TfiI	GAWTC	3 cut(s)	131, 514, 698
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	5 cut(s)	55, 58, 829, 885, 905
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	5 cut(s)	87, 641, 711, 891, 915
TspGWI	ACGGA	1 cut(s)	172
VpaK11BI	GGWCC	3 cut(s)	92, 312, 505
XapI	RAATTY	4 cut(s)	276, 406, 412, 718
XbaI	TCTAGA	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	718
XspI	CTAG	3 cut(s)	489, 602, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.