Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006129

Physical Location & Seq

Genomic Coordinates Reverse (-)

7994166 .. 8002989

Gene Structure 8824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2739 bp

ATGGCGAAATCGGAAAACTCAACGACTTCGACTTTCTCTTCTTTCGCCAACAAGATTCAACCGTCCAACGATGCAGAGTCCGATCCCGATTCGTATGCCCTCGAGAAATTCAAACTCTACGAAACCAGAGCGAGGTTTTATCTAGTAGGGAGTGATAGGAATAAAAGATTCTTCAGAGTGTTGAAGATTGATCGTTCAGAGCCATCTGAGCTTAATATTAGTGAAGATCCTGTTGTATATTCGCCTCAAGAGATCAAGAGTCTGCTTCAGCGTATCGCTGAAGGCAATCGTGCCACGGGAGGATTGGCTTTTGTGGCCAAAGTCTATGGAATTGCTGGTTGTGCTAAGTTTATGGAGTCATACTATTTAGTTTTGGTTACAAAACGGCGACAGATTGGATGTATATGCGGGCATGCGATATATGCTATTGATGAAAGTCAAATGATCAGTGTTCCACATGCAACTATTCAATCTGATGTTGCGAATTCCAAAACTGAACTAAGGTACAAGAAGCTTCTGTCAAGTGTAGATTTGACAAAAGATTTCTTCTACAGTTACACTTACCCTATAATGCAAAGCTTGCAAAAGAATGTTCTATCATCTGGTGAGGAAGGGATGCCTTATGATAACATATTCGTATGGAATTCGTATCTGACGCAGCCTATTCGATCAAGGTGCAACAACACTATTTGGACACTGGCATTAGTTCATGGGCACTTTAAGCAGATAAGACTATCAATATATGGAAGAGACTTCAGTGTTACTTTAGTCTCCAGACGTTCTCGACATTTTGCAGGCACACGTTACTTGAAAAGGGGAGTGAATGATCGTGGAAGGGTTGCAAATGATGTTGAAACAGAACAACTTGTTCTTGATGATGAAGCTGGATCATGCAAAGGAAAAATGAGCTCAGTGGTGCAGATGCGAGGGTCAATTCCACTCTTTTGGTCACAAGAGGCCTCCAGATTTAGTCCTAAGCCTGATATCTTCTTACAGAGGTATGACCCTACATATGAGTCAACCAAAATGCATTTTGAAGACCTGGTGAATCGATATGGGAATCCGATCATTGTGCTCAACTTAATTAAGACAGTTGAGAAAAGGCCAAGGGAAATGGTGCTAAGACGTGAGTTTGCGAATGCTGTGGGTTATCTAAATTCAATTTTTCGTGAAGAAAATCATCTCAAATTCATCCACTGGGATTTCCATAAATTTGCGAAGAGCAAGTCGGCGAATGTATTGGCTGTTTTGGGTGCTGTAGCAAGCGAAGCCCTTGATTTGACTGGATTATATTTCAGCGGCAAGCCTAAAATTGTTAAGAAGAAGGCTAGCCAACTTAGTCATGCTAACACTGCAAGGGAACCTTCTCTGCGTGATCTAAGAGCTTACTCTGCGGAACTTTCAAGGGGTGAGAGTGCAAATGATATACTTAGTGCTCTTGCTAATCGAGAGAAAGAGATGAAGCTAACCCAACAAAAAAAAGACGAGGGAACTAATTCTTCAGCTCCTCGTTACCAAAGTGGTGTTCTGCGTACTAACTGTATCGATTGCTTGGATCGAACAAATGTAGCACAGTATGCATATGGTTTGGCTGCTTTAGGCCGGCAGCTGCATGCAATGGGTTTGAGCGATACACCTAAGATCGACCCTGACAGTAGCATAGCTGCTGCACTTATGGATATGTACCAGAGCATGGGAGATGCCCTTGCACAACAATATGGCGGCTCAGCTGCTCATAACACTGTTTTCCCAGAAAGGCAGGGGAAATGGAAGGCCACGACACAGTCTAGAGAGTTTCTCAAGTCTATCAAACGATACTACAGCAATACCTACACTGATGGCGAAAAGCAAGACGCCATAAACTTATTCTTGGGCTACTTTCAACCTCAGGAAGGGAAACCTGCGCTCTGGGAGCTGGATTCTGATTACTATCTCCATGTTTCAGGGATTGGAGATGATATTTTCCCAGATATCGGGGTCCAGTCCATTGCTAAACCTATGAGTGGTATTGGAGTCAATCTTGCACCAGTGCCAGCTTTCAGAGACGACTTCTCGCGGAAGAAGCTGACATCGTTTGACAAACTGATAGAGCAGACATGCAGTTCAATAAAGAACGTGAGGCTTTGTAGTGAGACAGACCAAAGGCCAGGTGGCAACACTGGAAGCACTGGTGTGGCTCCTGATGCAGCTGAGATTCAACTCAAGAGCCCCAATTGGCTGTTTGGTTCAAGAAAGCCCGAAGAGAGTAGCTCTGCCACAAAATCTGGTGCAGACGATAGTGAGAAAGGAGTAACCTCGACTGAGAGAGTCAACGATTTCTGCAACTTGGACTGGCTTTCTAAGTCCGACCGTCATCAAGGAGATATCTTCCAAAGGTATCTATCGATTACATCAACCAATGAAGCCAATGGTTGGTATGGTGGCACTCTCCTCGGTGACCAAGATGAAAACAGCGAAATTTACAGACATTACGCCCAATTCTGTCAGTGTCCAGCGATGGAACCATTTGAGAACGATCATGAGTTTGAACAGAACTTTGCGGAAGTTCTCCGCATGAACACAATCGATGTAATGGACATTGAAGAAGAAGAAACGGAGATGGAAAGCGATTTCAATGAATACACTCAGATCGGTAGCGATCTCGGGATCATTCCAATGCAATGCAAACACTTTGCTAGTGATCCTTGTTGGCTAGCCAGATGGCTTGTCGGAGATGATAAGGTCCCGAAGGTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005794 GO:0005811 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009826 GO:0009832 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031090 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0031984 GO:0032502 GO:0032989 GO:0034593 GO:0034595 GO:0036092 GO:0040007 GO:0042546 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043813 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0048589 GO:0048856 GO:0048869 GO:0052866 GO:0060560 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090407 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0106018 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syja_N

Protein Analysis

912

Amino Acids

102.81

Weight (kDa)

6.17

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	109 - 405	7e-82	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22620
fragaria_vesca	FvH4_5g32060 FvH4_5g32060 FvH4_5g32060 FvH4_5g32060 FvH4_5g32060 FvH4_5g32060
malus_domestica	MD08G1219600.v1.1 MD15G1408200.v1.1
prunus_persica	Prupe.1G552900_v2.0.a1 Prupe.1G552900_v2.0.a1 Prupe.1G552900_v2.0.a1 Prupe.1G552900_v2.0.a1
pyrus_communis	pycom08g19060 pycom08g19070 pycom15g36440 pycom15g36450
rosa_chinensis	RchiOBHm_Chr7g0228111
rosa_laevigata	RLG00000001589
rosa_multiflora	Rmu_sc0005840.1_g000015
rosa_roxburghii	Rroxscaffold_3G00231490
rosa_rugosa	Rorug07G0245700
rosa_samantha	Rh7AG399800 Rh7BG381200 Rh7CG418000 Rh7DG395900
rosa_wichuraiana	Rw7G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1909
AccB7I	CCANNNNNTGG	2 cut(s)	1693, 2412
AccII	CGCG	1 cut(s)	2056
AciI	CCGC	7 cut(s)	408, 1299, 1394, 1722, 2056, 2540, 2551
AclWI	GGATC	6 cut(s)	77, 221, 895, 1563, 2654, 2675
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	7 cut(s)	107, 484, 643, 1156, 1187, 1211, 2457
AcuI	CTGAAG	5 cut(s)	157, 251, 300, 739, 1485
AcyI	GRCGYC	1 cut(s)	1854
AfaI	GTAC	3 cut(s)	506, 1534, 1685
AfiI	CCNNNNNNNGG	6 cut(s)	132, 1693, 1892, 1973, 2003, 2412
AflIII	ACRYGT	1 cut(s)	800
AjiI	CACGTC	1 cut(s)	1127
AjnI	CCWGG	2 cut(s)	1041, 2146
AjuI	GAANNNNNNNTTGG	2 cut(s)	1509, 1541
AleI	CACNNNNGTG	1 cut(s)	2171
Alw21I	GWGCWC	3 cut(s)	911, 1077, 1438
Alw26I	GTCTC	4 cut(s)	744, 775, 2037, 2126
AlwI	GGATC	6 cut(s)	77, 221, 895, 1563, 2654, 2675
Ama87I	CYCGRG	2 cut(s)	101, 2642
AoxI	GGCC	6 cut(s)	315, 957, 1103, 1600, 1773, 2144
ApeKI	GCWGC	8 cut(s)	658, 1592, 1606, 1609, 1664, 1667, 1730, 2186
ApoI	RAATTY	7 cut(s)	107, 484, 643, 1156, 1187, 1211, 2457
ArsI	GACNNNNNNTTYG	2 cut(s)	1211, 1243
Asp700I	GAANNNNTTC	1 cut(s)	1495
AspLEI	GCGC	1 cut(s)	1906
AspS9I	GGNCC	2 cut(s)	1978, 2722
AsuHPI	GGTGA	4 cut(s)	617, 1057, 1421, 2447
AsuNHI	GCTAGC	2 cut(s)	1328, 2692
AvaI	CYCGRG	2 cut(s)	101, 2642
AvaII	GGWCC	2 cut(s)	1978, 2722
AxyI	CCTNAGG	1 cut(s)	1887
BaeGI	GKGCMC	1 cut(s)	717
BalI	TGGCCA	1 cut(s)	317
BanII	GRGCYC	2 cut(s)	911, 2210
BbsI	GAAGAC	1 cut(s)	1044
Bbv12I	GWGCWC	3 cut(s)	911, 1077, 1438
BbvI	GCAGC	8 cut(s)	670, 1579, 1596, 1618, 1651, 1654, 1717, 2198
BccI	CCATC	5 cut(s)	211, 1832, 2491, 2593, 2694
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	2 cut(s)	1043, 2148
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	4 cut(s)	744, 775, 2037, 2126
BfaI	CTAG	5 cut(s)	143, 1329, 1788, 2676, 2693
BfmI	CTRYAG	3 cut(s)	550, 1257, 1819
BfuAI	ACCTGC	1 cut(s)	1909
BlpI	GCTNAGC	1 cut(s)	1726
Bme1390I	CCNGG	2 cut(s)	1043, 2148
Bme18I	GGWCC	2 cut(s)	1978, 2722
BmeT110I	CYCGRG	2 cut(s)	101, 2642
BmgBI	CACGTC	1 cut(s)	1127
BmgT120I	GGNCC	2 cut(s)	1978, 2722
BmiI	GGNNCC	5 cut(s)	1362, 1979, 2178, 2502, 2724
BmrFI	CCNGG	2 cut(s)	1043, 2148
BmrI	ACTGGG	1 cut(s)	1207
BmsI	GCATC	5 cut(s)	61, 606, 912, 1690, 2173
BmtI	GCTAGC	2 cut(s)	1332, 2696
BmuI	ACTGGG	1 cut(s)	1207
BpiI	GAAGAC	1 cut(s)	1044
BplI	GAGNNNNNCTC	4 cut(s)	1782, 1814, 2234, 2266
BpmI	CTGGAG	2 cut(s)	757, 946
Bpu10I	CCTNAGC	1 cut(s)	975
Bpu1102I	GCTNAGC	1 cut(s)	1726
BpuEI	CTTGAG	3 cut(s)	231, 1784, 2186
Bsa29I	ATCGAT	4 cut(s)	1051, 1545, 2384, 2565
BsaBI	GATNNNNATC	1 cut(s)	1929
BsaHI	GRCGYC	1 cut(s)	1854
BsaJI	CCNNGG	3 cut(s)	294, 1106, 2431
Bsc4I	CCNNNNNNNGG	6 cut(s)	132, 1693, 1892, 1973, 2003, 2412
Bse118I	RCCGGY	1 cut(s)	1602
Bse1I	ACTGG	8 cut(s)	702, 1202, 1288, 1981, 2027, 2164, 2173, 2336
Bse21I	CCTNAGG	1 cut(s)	1887
Bse3DI	GCAATG	3 cut(s)	1623, 1986, 2666
Bse8I	GATNNNNATC	1 cut(s)	1929
BseBI	CCWGG	2 cut(s)	1043, 2148
BseCI	ATCGAT	4 cut(s)	1051, 1545, 2384, 2565
BseDI	CCNNGG	3 cut(s)	294, 1106, 2431
BseGI	GGATG	3 cut(s)	404, 621, 1191
BseJI	GATNNNNATC	1 cut(s)	1929
BseLI	CCNNNNNNNGG	6 cut(s)	132, 1693, 1892, 1973, 2003, 2412
BseMI	GCAATG	3 cut(s)	1623, 1986, 2666
BseMII	CTCAG	7 cut(s)	198, 924, 1740, 1901, 2181, 2292, 2639
BseNI	ACTGG	8 cut(s)	702, 1202, 1288, 1981, 2027, 2164, 2173, 2336
BseRI	GAGGAG	2 cut(s)	1497, 2420
BseSI	GKGCMC	1 cut(s)	717
BseXI	GCAGC	8 cut(s)	670, 1579, 1596, 1618, 1651, 1654, 1717, 2198
BsgI	GTGCAG	3 cut(s)	938, 1653, 2289
Bsh1236I	CGCG	1 cut(s)	2056
Bsh1285I	CGRYCG	1 cut(s)	2350
BshFI	GGCC	6 cut(s)	317, 959, 1105, 1602, 1775, 2146
BshVI	ATCGAT	4 cut(s)	1051, 1545, 2384, 2565
BsiEI	CGRYCG	1 cut(s)	2350
BsiHKAI	GWGCWC	3 cut(s)	911, 1077, 1438
BsiHKCI	CYCGRG	2 cut(s)	101, 2642
BsiSI	CCGG	1 cut(s)	1603
BslFI	GGGAC	1 cut(s)	2708
BslI	CCNNNNNNNGG	6 cut(s)	132, 1693, 1892, 1973, 2003, 2412
BsmAI	GTCTC	4 cut(s)	744, 775, 2037, 2126
BsmBI	CGTCTC	1 cut(s)	2037
BsmFI	GGGAC	1 cut(s)	2708
BsmI	GAATGC	1 cut(s)	1144
BsnI	GGCC	6 cut(s)	317, 959, 1105, 1602, 1775, 2146
BsoBI	CYCGRG	2 cut(s)	101, 2642
Bsp1286I	GDGCHC	5 cut(s)	717, 911, 1077, 1438, 2210
Bsp1720I	GCTNAGC	1 cut(s)	1726
BspACI	CCGC	7 cut(s)	408, 1299, 1394, 1722, 2056, 2540, 2551
BspANI	GGCC	6 cut(s)	317, 959, 1105, 1602, 1775, 2146
BspCNI	CTCAG	7 cut(s)	199, 923, 1739, 1900, 2182, 2293, 2638
BspDI	ATCGAT	4 cut(s)	1051, 1545, 2384, 2565
BspFNI	CGCG	1 cut(s)	2056
BspHI	TCATGA	1 cut(s)	2518
BspLI	GGNNCC	5 cut(s)	1362, 1979, 2178, 2502, 2724
BspMI	ACCTGC	1 cut(s)	1909
BspOI	GCTAGC	2 cut(s)	1332, 2696
BspPI	GGATC	6 cut(s)	77, 221, 895, 1563, 2654, 2675
BspQI	GCTCTTC	1 cut(s)	1214
BsrDI	GCAATG	3 cut(s)	1623, 1986, 2666
BsrFI	RCCGGY	1 cut(s)	1602
BsrI	ACTGG	8 cut(s)	702, 1202, 1288, 1981, 2027, 2164, 2173, 2336
BssAI	RCCGGY	1 cut(s)	1602
BssECI	CCNNGG	3 cut(s)	294, 1106, 2431
BssNI	GRCGYC	1 cut(s)	1854
BssT1I	CCWWGG	1 cut(s)	1106
Bst2UI	CCWGG	2 cut(s)	1043, 2148
Bst4CI	ACNGT	9 cut(s)	63, 554, 1093, 1541, 1575, 1655, 1744, 1785, 2351
Bst6I	CTCTTC	4 cut(s)	43, 742, 1214, 2235
BstACI	GRCGYC	1 cut(s)	1854
BstAPI	GCANNNNNTGC	2 cut(s)	580, 1577
BstDSI	CCRYGG	1 cut(s)	294
BstEII	GGTNACC	1 cut(s)	2435
BstENI	CCTNNNNNAGG	1 cut(s)	1890
BstF5I	GGATG	3 cut(s)	404, 621, 1191
BstFNI	CGCG	1 cut(s)	2056
BstHHI	GCGC	1 cut(s)	1906
BstMAI	GTCTC	4 cut(s)	744, 775, 2037, 2126
BstMCI	CGRYCG	1 cut(s)	2350
BstNI	CCWGG	2 cut(s)	1043, 2148
BstNSI	RCATGY	4 cut(s)	416, 461, 1616, 2100
BstPI	GGTNACC	1 cut(s)	2435
BstSCI	CCNGG	2 cut(s)	1041, 2146
BstSFI	CTRYAG	3 cut(s)	550, 1257, 1819
BstSLI	GKGCMC	1 cut(s)	717
BstUI	CGCG	1 cut(s)	2056
BstV1I	GCAGC	8 cut(s)	670, 1579, 1596, 1618, 1651, 1654, 1717, 2198
BstV2I	GAAGAC	1 cut(s)	1044
BstX2I	RGATCY	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	945
BstYI	RGATCY	1 cut(s)	226
Bsu15I	ATCGAT	4 cut(s)	1051, 1545, 2384, 2565
Bsu36I	CCTNAGG	1 cut(s)	1887
BsuRI	GGCC	6 cut(s)	317, 959, 1105, 1602, 1775, 2146
BsuTUI	ATCGAT	4 cut(s)	1051, 1545, 2384, 2565
BtgI	CCRYGG	1 cut(s)	294
BtgZI	GCGATG	1 cut(s)	2510
BtrI	CACGTC	1 cut(s)	1127
BtsCI	GGATG	3 cut(s)	404, 621, 1191
BtsI	GCAGTG	1 cut(s)	1350
BveI	ACCTGC	1 cut(s)	1909
CciI	TCATGA	1 cut(s)	2518
CfoI	GCGC	1 cut(s)	1906
Cfr10I	RCCGGY	1 cut(s)	1602
Cfr13I	GGNCC	2 cut(s)	1978, 2722
ClaI	ATCGAT	4 cut(s)	1051, 1545, 2384, 2565
CseI	GACGC	2 cut(s)	664, 1862
CsiI	ACCWGGT	1 cut(s)	1041
Csp6I	GTAC	3 cut(s)	505, 1533, 1684
CviQI	GTAC	3 cut(s)	505, 1533, 1684
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	4 cut(s)	43, 742, 1214, 2235
EarI	CTCTTC	4 cut(s)	43, 742, 1214, 2235
Ecl136II	GAGCTC	1 cut(s)	909
Eco130I	CCWWGG	1 cut(s)	1106
Eco147I	AGGCCT	1 cut(s)	959
Eco24I	GRGCYC	2 cut(s)	911, 2210
Eco32I	GATATC	3 cut(s)	985, 1972, 2365
Eco47I	GGWCC	2 cut(s)	1978, 2722
Eco53kI	GAGCTC	1 cut(s)	909
Eco57I	CTGAAG	5 cut(s)	157, 251, 300, 739, 1485
Eco81I	CCTNAGG	1 cut(s)	1887
Eco88I	CYCGRG	2 cut(s)	101, 2642
Eco91I	GGTNACC	1 cut(s)	2435
EcoICRI	GAGCTC	1 cut(s)	909
EcoNI	CCTNNNNNAGG	1 cut(s)	1890
EcoO109I	RGGNCCY	1 cut(s)	2722
EcoO65I	GGTNACC	1 cut(s)	2435
EcoRI	GAATTC	2 cut(s)	484, 643
EcoRII	CCWGG	2 cut(s)	1041, 2146
EcoRV	GATATC	3 cut(s)	985, 1972, 2365
EcoT14I	CCWWGG	1 cut(s)	1106
EcoT22I	ATGCAT	2 cut(s)	1032, 1582
EcoT38I	GRGCYC	2 cut(s)	911, 2210
ErhI	CCWWGG	1 cut(s)	1106
Esp3I	CGTCTC	1 cut(s)	2037
FalI	AAGNNNNNCTT	2 cut(s)	1348, 1380
FaqI	GGGAC	1 cut(s)	2708
FauI	CCCGC	1 cut(s)	401
FauNDI	CATATG	2 cut(s)	1012, 1582
FbaI	TGATCA	1 cut(s)	444
FokI	GGATG	3 cut(s)	411, 628, 1178
FriOI	GRGCYC	2 cut(s)	911, 2210
FspBI	CTAG	5 cut(s)	143, 1329, 1788, 2676, 2693
GlaI	GCGC	1 cut(s)	1905
GsuI	CTGGAG	2 cut(s)	757, 946
HaeIII	GGCC	6 cut(s)	317, 959, 1105, 1602, 1775, 2146
HapII	CCGG	1 cut(s)	1603
HgaI	GACGC	2 cut(s)	664, 1862
HhaI	GCGC	1 cut(s)	1906
Hin1I	GRCGYC	1 cut(s)	1854
Hin6I	GCGC	1 cut(s)	1904
HinP1I	GCGC	1 cut(s)	1904
HincII	GTYRAC	2 cut(s)	1020, 2311
HindII	GTYRAC	2 cut(s)	1020, 2311
HindIII	AAGCTT	2 cut(s)	512, 577
HpaII	CCGG	1 cut(s)	1603
HphI	GGTGA	4 cut(s)	617, 1057, 1421, 2447
Hpy166II	GTNNAC	2 cut(s)	1020, 2311
Hpy8I	GTNNAC	2 cut(s)	1020, 2311
HpyAV	CCTTC	8 cut(s)	275, 605, 828, 1318, 1374, 1765, 1886, 2722
HpyCH4III	ACNGT	9 cut(s)	63, 554, 1093, 1541, 1575, 1655, 1744, 1785, 2351
HpyCH4IV	ACGT	4 cut(s)	778, 802, 1126, 2115
HpySE526I	ACGT	4 cut(s)	778, 802, 1126, 2115
Hsp92I	GRCGYC	1 cut(s)	1854
HspAI	GCGC	1 cut(s)	1904
KroI	GCCGGC	1 cut(s)	1602
KroNI	GCCGGC	1 cut(s)	1604
Ksp22I	TGATCA	1 cut(s)	444
LguI	GCTCTTC	1 cut(s)	1214
LmnI	GCTCC	3 cut(s)	1510, 1912, 2182
Lsp1109I	GCAGC	8 cut(s)	670, 1579, 1596, 1618, 1651, 1654, 1717, 2198
LweI	GCATC	5 cut(s)	61, 606, 912, 1690, 2173
MabI	ACCWGGT	1 cut(s)	1041
MaeI	CTAG	5 cut(s)	143, 1329, 1788, 2676, 2693
MaeII	ACGT	4 cut(s)	778, 802, 1126, 2115
MaeIII	GTNAC	8 cut(s)	376, 554, 760, 803, 948, 1511, 2290, 2435
MfeI	CAATTG	1 cut(s)	2212
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	5 cut(s)	717, 911, 1077, 1438, 2210
MlsI	TGGCCA	1 cut(s)	317
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	6 cut(s)	86, 268, 365, 1025, 2022, 2316
MmeI	TCCRAC	3 cut(s)	90, 2370, 2689
Mox20I	TGGCCA	1 cut(s)	317
Mph1103I	ATGCAT	2 cut(s)	1032, 1582
MroNI	GCCGGC	1 cut(s)	1602
MroXI	GAANNNNTTC	1 cut(s)	1495
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	6 cut(s)	213, 720, 1082, 1086, 1317, 2737
MslI	CAYNNNNRTG	2 cut(s)	2171, 2654
Msp20I	TGGCCA	1 cut(s)	317
MspA1I	CMGCKG	4 cut(s)	1299, 1609, 1730, 2189
MspI	CCGG	1 cut(s)	1603
MspR9I	CCNGG	2 cut(s)	1043, 2148
MunI	CAATTG	1 cut(s)	2212
Mva1269I	GAATGC	1 cut(s)	1144
MvaI	CCWGG	2 cut(s)	1043, 2148
MvnI	CGCG	1 cut(s)	2056
NaeI	GCCGGC	1 cut(s)	1604
NdeI	CATATG	2 cut(s)	1012, 1582
NgoMIV	GCCGGC	1 cut(s)	1602
NheI	GCTAGC	2 cut(s)	1328, 2692
NlaIV	GGNNCC	5 cut(s)	1362, 1979, 2178, 2502, 2724
NmuCI	GTSAC	2 cut(s)	948, 2435
NsiI	ATGCAT	2 cut(s)	1032, 1582
NspI	RCATGY	4 cut(s)	416, 461, 1616, 2100
OliI	CACNNNNGTG	1 cut(s)	2171
PacI	TTAATTAA	1 cut(s)	1086
PaeI	GCATGC	2 cut(s)	416, 1616
PaeR7I	CTCGAG	1 cut(s)	101
PagI	TCATGA	1 cut(s)	2518
PceI	AGGCCT	1 cut(s)	959
PciSI	GCTCTTC	1 cut(s)	1214
PctI	GAATGC	1 cut(s)	1144
PdiI	GCCGGC	1 cut(s)	1604
PdmI	GAANNNNTTC	1 cut(s)	1495
PfeI	GAWTC	7 cut(s)	55, 89, 168, 1048, 1060, 1919, 2194
PflFI	GACNNNGTC	1 cut(s)	1783
PflMI	CCANNNNNTGG	2 cut(s)	1693, 2412
PleI	GAGTC	6 cut(s)	85, 267, 364, 1024, 2021, 2315
PpsI	GAGTC	6 cut(s)	85, 267, 364, 1024, 2021, 2315
PpuMI	RGGWCCY	1 cut(s)	2722
Psp124BI	GAGCTC	1 cut(s)	911
Psp5II	RGGWCCY	1 cut(s)	2722
Psp6I	CCWGG	2 cut(s)	1041, 2146
PspEI	GGTNACC	1 cut(s)	2435
PspGI	CCWGG	2 cut(s)	1041, 2146
PspN4I	GGNNCC	5 cut(s)	1362, 1979, 2178, 2502, 2724
PspPI	GGNCC	2 cut(s)	1978, 2722
PspPPI	RGGWCCY	1 cut(s)	2722
PsuI	RGATCY	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	1783
PvuII	CAGCTG	3 cut(s)	1609, 1730, 2189
RsaI	GTAC	3 cut(s)	506, 1534, 1685
RsaNI	GTAC	3 cut(s)	505, 1533, 1684
RseI	CAYNNNNRTG	2 cut(s)	2171, 2654
SacI	GAGCTC	1 cut(s)	911
SapI	GCTCTTC	1 cut(s)	1214
SaqAI	TTAA	6 cut(s)	213, 720, 1082, 1086, 1317, 2737
Sau96I	GGNCC	2 cut(s)	1978, 2722
SchI	GAGTC	6 cut(s)	86, 268, 365, 1025, 2022, 2316
ScrFI	CCNGG	2 cut(s)	1043, 2148
SduI	GDGCHC	5 cut(s)	717, 911, 1077, 1438, 2210
SexAI	ACCWGGT	1 cut(s)	1041
SfaNI	GCATC	5 cut(s)	61, 606, 912, 1690, 2173
SfcI	CTRYAG	3 cut(s)	550, 1257, 1819
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	2 cut(s)	1978, 2722
SlaI	CTCGAG	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	2171, 2654
SmlI	CTYRAG	4 cut(s)	101, 246, 1799, 2201
SmoI	CTYRAG	4 cut(s)	101, 246, 1799, 2201
SphI	GCATGC	2 cut(s)	416, 1616
SseBI	AGGCCT	1 cut(s)	959
SsiI	CCGC	7 cut(s)	408, 1299, 1394, 1722, 2056, 2540, 2551
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	5 cut(s)	143, 1329, 1788, 2676, 2693
SstI	GAGCTC	1 cut(s)	911
StuI	AGGCCT	1 cut(s)	959
StyD4I	CCNGG	2 cut(s)	1041, 2146
StyI	CCWWGG	1 cut(s)	1106
TaaI	ACNGT	9 cut(s)	63, 554, 1093, 1541, 1575, 1655, 1744, 1785, 2351
TaiI	ACGT	4 cut(s)	781, 805, 1129, 2118
TauI	GCSGC	2 cut(s)	1302, 1725
TfiI	GAWTC	7 cut(s)	55, 89, 168, 1048, 1060, 1919, 2194
Tru1I	TTAA	6 cut(s)	213, 720, 1082, 1086, 1317, 2737
Tru9I	TTAA	6 cut(s)	213, 720, 1082, 1086, 1317, 2737
TseFI	GTSAC	2 cut(s)	948, 2435
TseI	GCWGC	8 cut(s)	658, 1592, 1606, 1609, 1664, 1667, 1730, 2186
Tsp45I	GTSAC	2 cut(s)	948, 2435
TspDTI	ATGAA	9 cut(s)	447, 698, 894, 1180, 1475, 2415, 2460, 2570, 2631
TspGWI	ACGGA	1 cut(s)	2609
Tth111I	GACNNNGTC	1 cut(s)	1783
Van91I	CCANNNNNTGG	2 cut(s)	1693, 2412
VpaK11BI	GGWCC	2 cut(s)	1978, 2722
XagI	CCTNNNNNAGG	1 cut(s)	1890
XapI	RAATTY	7 cut(s)	107, 484, 643, 1156, 1187, 1211, 2457
XbaI	TCTAGA	1 cut(s)	1787
XceI	RCATGY	4 cut(s)	416, 461, 1616, 2100
XcmI	CCANNNNNNNNNTGG	2 cut(s)	301, 2147
XhoI	CTCGAG	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	1495
XspI	CTAG	5 cut(s)	143, 1329, 1788, 2676, 2693
Zsp2I	ATGCAT	2 cut(s)	1032, 1582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.