pycom08g19070

phosphoinositide phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0006129
Physical Location & Seq
Forward (+)
19120118 .. 19122143
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19070.1

Sequence Viewer

Length: 558 bp
ATGCATGAAATACAGTTGAAAAGCCCAAATTGGCTTTTTGGCCAGAGAAAATACGAAGAAAGTGGCTCTGCACCAAAAGTTACTTCACATGAAATTGGTAATGGAGGATCCCATAACAAGACAGGGGTTGATGGATTTTGTGACTTGAATTGGCTTTCTTCTGAAGCCGATGATAATGAGGAGGATATCTTCCAGAGGTACCTTTCAATGACATCAGTAGATGAAGCCAATGGGTGGTACGGTGGGACACTGCTAGGTGATCAAGATGAAAGCAGTGAGATATATAAGCACTATGCTGAGTTATGTCAGGGCCGTGGCATTGAGCCTTTAAAAAATGATGGTGAAATGGAGAAGCACTATGCTGATGCTCTTCATATGGGAACAATTAACATTGTAGATGATGCAGCTGTTGAGGTAGAGATGGAAGCCGCCCTCAAGGAATACGACCAAATTGGTAGTGATCTCGGGAGCATCCCCGCATCGTGTAAATCGTTAGCGGAAGATCCGAGCTGGTTGACGAGGTGGATCATTGGCGAAGAGAAAGTTGAGAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0000902 GO:0003674 GO:0003824 GO:0004438 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005794 GO:0005811 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006996 GO:0007010 GO:0007033 GO:0007272 GO:0007275 GO:0007399 GO:0007610 GO:0007626 GO:0008150 GO:0008152 GO:0008366 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009826 GO:0009832 GO:0009987 GO:0010008 GO:0010720 GO:0010927 GO:0010975 GO:0010976 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0022008 GO:0022607 GO:0030154 GO:0030182 GO:0031090 GO:0031344 GO:0031346 GO:0031410 GO:0031641 GO:0031642 GO:0031644 GO:0031645 GO:0031901 GO:0031902 GO:0031982 GO:0031984 GO:0032288 GO:0032501 GO:0032502 GO:0032989 GO:0034593 GO:0034595 GO:0034596 GO:0036092 GO:0040007 GO:0042546 GO:0042552 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043473 GO:0043812 GO:0043813 GO:0044057 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048646 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051241 GO:0051960 GO:0051961 GO:0051962 GO:0052744 GO:0052866 GO:0060284 GO:0060560 GO:0065007 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0090407 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0106018 GO:0120035 GO:1901576 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syja_N

Protein Analysis

186

Amino Acids

20.63

Weight (kDa)

4.41

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 198
AccB7I CCANNNNNTGG 1 cut(s) 234
AciI CCGC 3 cut(s) 429, 477, 497
AclWI GGATC 4 cut(s) 102, 115, 497, 533
AcoI YGGCCR 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 2 cut(s) 200, 239
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 3 cut(s) 19, 148, 207
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
AluBI AGCT 2 cut(s) 407, 510
AluI AGCT 2 cut(s) 407, 510
AlwI GGATC 4 cut(s) 102, 115, 497, 533
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 2 cut(s) 40, 310
ApeKI GCWGC 1 cut(s) 404
Asp718I GGTACC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 2 cut(s) 269, 353
AvaI CYCGRG 1 cut(s) 464
BalI TGGCCA 1 cut(s) 42
BamHI GGATCC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 416
BccI CCATC 3 cut(s) 125, 332, 415
BceAI ACGGC 1 cut(s) 297
BclI TGATCA 1 cut(s) 259
BfaI CTAG 1 cut(s) 254
BisI GCNGC 2 cut(s) 405, 429
BlsI GCNGC 2 cut(s) 406, 430
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 109, 200
BmsI GCATC 4 cut(s) 355, 391, 480, 488
BpuEI CTTGAG 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 416
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 2 cut(s) 42, 312
BshNI GGYRCC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 464
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 2 cut(s) 42, 312
BsoBI CYCGRG 1 cut(s) 464
Bsp143I GATC 5 cut(s) 107, 259, 460, 502, 525
BspACI CCGC 3 cut(s) 429, 477, 497
BspANI GGCC 2 cut(s) 42, 312
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 109, 200
BspPI GGATC 4 cut(s) 102, 115, 497, 533
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 5 cut(s) 107, 259, 460, 502, 525
Bst4CI ACNGT 2 cut(s) 15, 242
Bst6I CTCTTC 2 cut(s) 375, 531
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 471
BstKTI GATC 5 cut(s) 110, 262, 463, 505, 528
BstMBI GATC 5 cut(s) 107, 259, 460, 502, 525
BstV1I GCAGC 1 cut(s) 416
BstX2I RGATCY 2 cut(s) 107, 502
BstYI RGATCY 2 cut(s) 107, 502
BsuRI GGCC 2 cut(s) 42, 312
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 471
BtsI GCAGTG 2 cut(s) 248, 280
BtsIMutI CAGTG 2 cut(s) 248, 280
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 2 cut(s) 199, 238
CviAII CATG 2 cut(s) 5, 89
CviQI GTAC 2 cut(s) 199, 238
DdeI CTNAG 1 cut(s) 297
DpnI GATC 5 cut(s) 109, 261, 462, 504, 527
DpnII GATC 5 cut(s) 107, 259, 460, 502, 525
DraI TTTAAA 1 cut(s) 330
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 375, 531
EarI CTCTTC 2 cut(s) 375, 531
Eco32I GATATC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 464
EcoRV GATATC 1 cut(s) 187
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 92
FaqI GGGAC 1 cut(s) 259
FatI CATG 2 cut(s) 4, 88
FauI CCCGC 1 cut(s) 484
FauNDI CATATG 1 cut(s) 375
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 405, 429
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 2 cut(s) 405, 429
FspBI CTAG 1 cut(s) 254
GluI GCNGC 2 cut(s) 405, 429
HaeIII GGCC 2 cut(s) 42, 312
Hin1II CATG 2 cut(s) 8, 92
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HphI GGTGA 2 cut(s) 269, 353
Hpy166II GTNNAC 1 cut(s) 516
Hpy188I TCNGA 2 cut(s) 163, 507
Hpy188III TCNNGA 3 cut(s) 193, 263, 466
Hpy8I GTNNAC 1 cut(s) 516
HpyCH4III ACNGT 2 cut(s) 15, 242
HpyCH4V TGCA 3 cut(s) 4, 71, 404
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 2 cut(s) 8, 92
KpnI GGTACC 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 5 cut(s) 107, 259, 460, 502, 525
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 468
LpnPI CCDG 5 cut(s) 56, 108, 206, 293, 496
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 4 cut(s) 355, 391, 480, 488
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 79, 140
MalI GATC 5 cut(s) 109, 261, 462, 504, 527
MboI GATC 5 cut(s) 107, 259, 460, 502, 525
MboII GAAGA 6 cut(s) 68, 150, 181, 362, 512, 548
MflI RGATCY 2 cut(s) 107, 502
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 5 cut(s) 28, 93, 148, 384, 450
MluNI TGGCCA 1 cut(s) 42
MnlI CCTC 8 cut(s) 98, 172, 175, 189, 406, 443, 513, 543
Mox20I TGGCCA 1 cut(s) 42
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 42
MseI TTAA 2 cut(s) 329, 387
Msp20I TGGCCA 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 407
NdeI CATATG 1 cut(s) 375
NdeII GATC 5 cut(s) 107, 259, 460, 502, 525
NlaIII CATG 2 cut(s) 8, 92
NlaIV GGNNCC 2 cut(s) 109, 200
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 488
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 2 cut(s) 406, 430
PspN4I GGNNCC 2 cut(s) 109, 200
PspPI GGNCC 1 cut(s) 310
PsuI RGATCY 2 cut(s) 107, 502
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 2 cut(s) 200, 239
RsaNI GTAC 2 cut(s) 199, 238
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 329, 387
SatI GCNGC 2 cut(s) 405, 429
Sau3AI GATC 5 cut(s) 107, 259, 460, 502, 525
Sau96I GGNCC 1 cut(s) 310
SetI ASST 7 cut(s) 200, 204, 259, 409, 417, 512, 524
SfaNI GCATC 4 cut(s) 355, 391, 480, 488
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 5 cut(s) 28, 93, 148, 384, 450
SsiI CCGC 3 cut(s) 429, 477, 497
SspMI CTAG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 15, 242
TasI AATT 5 cut(s) 28, 93, 148, 384, 450
TauI GCSGC 1 cut(s) 431
Tru1I TTAA 2 cut(s) 329, 387
Tru9I TTAA 2 cut(s) 329, 387
TscAI CASTG 2 cut(s) 255, 280
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 5 cut(s) 21, 105, 237, 282, 362
TspRI CASTG 2 cut(s) 255, 280
Van91I CCANNNNNTGG 1 cut(s) 234
XspI CTAG 1 cut(s) 254
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.