Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010016

Physical Location & Seq

Genomic Coordinates Forward (+)

8083184 .. 8089273

Gene Structure 6090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2955 bp

ATGTCCAAATCTCGGGCAGTTGTGGAGCTCACCGCTCGTTTCGATCTCGGCGGCGACGATAAGATCCGAGCTTTATCTCTCTCACCTATCTCCGATTCTCAAACCCTAGTATACCTCGGAACCTACTCCGGATCTCTGATTCTCCTATCTCTCGACACTTTAACTAATACCGTCTCGCGTCTCGCAAGTGTATCGCTGAGCCCTTCTCCTGTTGAGTCTATCTTTGTACTCGGCGAGGAAAGAGGGAGAGTTCTAGCTCTCTGCAATGGTTACTTGTTCTTATTGGATTCGCTTCTTTCTCAACCAGCTAAGAGATTGGGTGGTTTATTGAAAGGGATCAATGTGATTGCTAAGAGAGTAAGAGGACGTGATTCGTCGAGTACTGACTTGTTGCCTTCTGAGATTTCAACGGATTCTAGCTCGAGTAAGAAGTTTCTTCAGTTGCTTGGTGCTGGGAATCTTGTGAGTGATGTTAGAGGTAATGATTCTAGACATGAGAGAGTCCAACAAGGTCACTATGTTTTCGCTGTTGCTATTGGTGAGAGAATGTTGCTGATTGAACTTCAATGTGCTGAAAAAGAAGGATTAAGTGGTTCCTTTGTTGTTTTGAAAGAGATTCTGGGAATTGGTGGGATCAAAACTTTGGTTTGGCTTGATGATTATGTTATTGCGGGAACTGTTAAAGGTTATAGTTTGATCTCGTGTGTCACTGGTCTAAGTGGGGTTATTTTCACATTGCCTGATGTTTCTGGACCGCCGCTGCTTAAATTGCTCTGTAAAGAGTGGAAAGTGTTGTTGTTGGTGGACAATGTTGGAGTTGTTGTGGACACAAATGGTCAGCCTATTGGAGGGAGCCTTGTGTTTCGGAGGAGGCCTGATTCTGTTGGAGAATTGTCTTTCTACTTGGTGACTGTTGGAGATGGAAAAATGGAAATACATCAGAAGAAGTCTGGTGCTTGTGTTCAATCAGTTAGTTTTGGTCCTCAAGGATGTGGGCCTTCACTTTTGGCCGCAGATGAGGCAGGAGACGGAAACCTTTTGGTTGTCACTACCTTGTCAAAGCTTATTTTTTATCGGAGAGTGCCTTATGAAGAACAGATTAAAGACCTCTTGAGGAAAAAGAGATATAGAGAAACCATCTCCTTGGTGGAGGAACTTGACTCACAGGGGGAAATTTCGAAAGACATGCTTTCGTTTCTTCATGCTCAAATAGGGTATCTACTGCTTTTTGATTTGCGCTTTGAGGAAGCTGTGAATCAATTTTTGAAGTCAGAAAAAATGGAACCTTCTGAAGTTTTTCCTTTTATCATGCGGGATCCTAATCGCTGGTCTTTGGTGGTTCCAAGAAACAGATACTGGGGACTGCATCCTCCCCCAGCTCCTTTCGAAGATGTTGTAGATAATGGGCTGATGGCCATCCAGAGAGCCAATTTTCTTAGAAAAGCAGGAATGGACACTCCGGTTGACGAAGAGTTTTTCTCAGATCCCCCTAGTAGAGCTGATTTACTGGATTCAGCAATTAAAAACATAACCAGGTACCTCGAGATATCACGTGAGAAGGGCTTAACTCTCCCAGTGAGGGAGGGAATAGACACGCTTCTAATGCTTCTTTACAGAGCATTAAACCGTGTTGAAGATATGGAGAATCTTGCATCTTCCGGTAATAACTGTGTTGTGGAGGAGTTGGAGACTCTTCTAACTGAATCTGGACACTTACGGACACTTGCATTCCTCTATGCAACTAAGGGGATGGGTGCGAAGGCTCTTGCTATTTGGCGTCTCTTTACGAAGAATTATTCATCTGGTCTATGGCAAGACTCAGATGACTTGGTACCCTATTTACACGATAACGAGCTCATTAGGTTATCTGGTAAAGAGGCTGCTGCCGCAGAAGCAGCCAGAATTCTTGAGGAACCCTGTGATCCAGAACTGGCATTGCAGCATCTTAGTTGGATTGCAGATGTAAACCCATTGTTTGCTATCCAAGTCTTGACGTCAGATAAAAGGACAGAAGAGCTTTCGCCAGAGCAAGTGATCCAAGCTATTGATCCCAAAAAGGTTGAAATCATACAGAGGTACTTCCAATGGTTGATTGAGGAAAGAGACTACACTGACCCGCAGCTGCATACATCGTATGCTCTCTCACTTGCCAGATCAGCACTTGAGTGTGTTGAAGTTCAAAATGGTATCCAAGAAGCTGATGTTCCAAATGGTAGTGAGGCACATGATAGCAATGTTGGAAGTATTTCTTTGTTTGAAGTTGACGTACGAGAAAGATTGCAGGCCTTTTTGCAGTCTTCAGATCTATATGATCCTGAAGAAATCTTGGAATTGGTAGAAGGATCAGAACTGTGGTTGGAAAAGGCAATCCTATACCGAAGGATTGGGAAGGAGACATTGGTCCTCCAAATTCTTGCTCTGAAGCTTGAGGATTGTGCAGCTGCAGAGCAATATTGTGTAGAGATTGGAAGACCAGATGCATTTATGCAGTTGCTTGATATGTACCTGGATCCTCAAAATGGTAAAGAACCTATGTTCAAGGCTGCTGTTCGTCTGCTCCACAACCACGGGGAATCCCTTGATCCTTTGCAAGTATTGGACAAATTGTCTCCTGATATGCCCTTAAAACTGGCATCAGATACAATTTTGAGAATGCTGAGGGCTCGGGTTCATCATCATCGTCAAGGCCAGATCGTACACAATATCTCTCGTGCATTGGATGTAGACTCGAGGTTAGCAAGATTAGAAGAAAGATCACGTCACATGCAGATAAATGATGAGAGCCTCTGTGATTCCTGCTATGCCCGTCTGGGAACTAAATTATTTGCTATGTACCCCGACGATACCATTGTCTGTTACAAGTGTTACCGACGCCTGGGTGAATCAAAGTCAGTAACAGGCCGCGACTTCAAACGAGATGTTCTGATAAAACCCGGTTGGTTAGTTAACCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009987 GO:0010015 GO:0012505 GO:0022622 GO:0023052 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046332 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0097708 GO:0099023 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

CNH Clathrin Vps39_1 Vps39_2

Protein Analysis

984

Amino Acids

109.9

Weight (kDa)

5.28

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps39_1	PF10366	530 - 602	4.3e-07	Vacuolar sorting protein 39 domain 1
Clathrin	PF00637	758 - 839	5e-06	Region in Clathrin and VPS
zf-Vps39_C	PF10367	919 - 958	6.4e-14	Vacuolar sorting protein 39 C-terminal zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22860
fragaria_vesca	FvH4_3g11790
malus_domestica	MD05G1259300.v1.1 MD10G1238900.v1.1
prunus_persica	Prupe.4G105500_v2.0.a1 Prupe.4G105500_v2.0.a1 Prupe.4G105500_v2.0.a1
pyrus_communis	pycom05g24370 pycom10g19990
rosa_chinensis	RchiOBHm_Chr5g0019211
rosa_laevigata	RLG00000032428
rosa_multiflora	Rmu_co8432961.1_g000001 Rmu_sc0002561.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058780 Rroxscaffold_1G00074160
rosa_rugosa	Rorug05G0048300
rosa_samantha	Rh5AG139700 Rh5BG138700 Rh5CG150100 Rh5DG139300
rosa_wichuraiana	Rw5G012420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1997
Acc65I	GGTACC	2 cut(s)	1536, 1831
AccB1I	GGYRCC	2 cut(s)	1536, 1831
AccBSI	CCGCTC	1 cut(s)	35
AccI	GTMKAC	2 cut(s)	111, 2724
AccII	CGCG	2 cut(s)	178, 2904
AccIII	TCCGGA	1 cut(s)	128
AcoI	YGGCCR	2 cut(s)	1008, 1413
AcsI	RAATTY	3 cut(s)	1173, 1902, 2409
AcuI	CTGAAG	5 cut(s)	422, 1311, 2283, 2337, 2441
AcvI	CACGTG	1 cut(s)	1553
AcyI	GRCGYC	3 cut(s)	1777, 1994, 2872
AfaI	GTAC	9 cut(s)	228, 382, 1538, 1833, 2078, 2268, 2504, 2697, 2834
AfiI	CCNNNNNNNGG	5 cut(s)	12, 848, 1579, 2519, 2875
AgeI	ACCGGT	1 cut(s)	2949
AhdI	GACNNNNNGTC	1 cut(s)	2605
AjiI	CACGTC	2 cut(s)	368, 2759
AjnI	CCWGG	3 cut(s)	1532, 2505, 2874
AjuI	GAANNNNNNNTTGG	2 cut(s)	2381, 2413
AleI	CACNNNNGTG	1 cut(s)	2164
Alw21I	GWGCWC	2 cut(s)	30, 1857
Alw26I	GTCTC	8 cut(s)	178, 185, 1020, 1682, 1784, 2097, 2387, 2613
AlwNI	CAGNNNCTG	1 cut(s)	1356
Ama87I	CYCGRG	5 cut(s)	12, 421, 1541, 2664, 2728
Aor13HI	TCCGGA	1 cut(s)	128
AoxI	GGCC	7 cut(s)	872, 995, 1008, 1413, 2283, 2686, 2899
ApoI	RAATTY	3 cut(s)	1173, 1902, 2409
AsiGI	ACCGGT	1 cut(s)	2949
Asp700I	GAANNNNTTC	2 cut(s)	1296, 2245
Asp718I	GGTACC	2 cut(s)	1536, 1831
AspLEI	GCGC	1 cut(s)	1239
AspS9I	GGNCC	4 cut(s)	752, 980, 995, 2401
AsuC2I	CCSGG	1 cut(s)	2934
AsuHPI	GGTGA	5 cut(s)	22, 75, 551, 919, 2891
AsuII	TTCGAA	2 cut(s)	1178, 1386
AvaI	CYCGRG	5 cut(s)	12, 421, 1541, 2664, 2728
AvaII	GGWCC	3 cut(s)	752, 980, 2401
BaeI	ACNNNNGTAYC	2 cut(s)	2835, 2868
BalI	TGGCCA	1 cut(s)	1415
BamHI	GGATCC	2 cut(s)	1315, 2509
BanI	GGYRCC	2 cut(s)	1536, 1831
BanII	GRGCYC	4 cut(s)	30, 203, 1857, 2665
BarI	GAAGNNNNNNTAC	2 cut(s)	2250, 2282
BauI	CACGAG	2 cut(s)	700, 2709
BbrPI	CACGTG	1 cut(s)	1553
BbsI	GAAGAC	2 cut(s)	2289, 2476
Bbv12I	GWGCWC	2 cut(s)	30, 1857
BbvCI	CCTCAGC	1 cut(s)	2657
BccI	CCATC	5 cut(s)	914, 1145, 1405, 1424, 1744
BcgI	CGANNNNNNTGC	4 cut(s)	174, 208, 1168, 1202
BciT130I	CCWGG	3 cut(s)	1534, 2507, 2876
BciVI	GTATCC	1 cut(s)	2198
BcnI	CCSGG	1 cut(s)	2934
BcoDI	GTCTC	8 cut(s)	178, 185, 1020, 1682, 1784, 2097, 2387, 2613
BfaI	CTAG	5 cut(s)	107, 254, 417, 489, 1491
BfmI	CTRYAG	1 cut(s)	2442
BfuI	GTATCC	1 cut(s)	2198
BglII	AGATCT	1 cut(s)	2302
BlpI	GCTNAGC	1 cut(s)	197
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	4 cut(s)	1534, 2507, 2876, 2934
Bme18I	GGWCC	3 cut(s)	752, 980, 2401
BmeRI	GACNNNNNGTC	1 cut(s)	2605
BmeT110I	CYCGRG	5 cut(s)	12, 421, 1541, 2664, 2728
BmgBI	CACGTC	2 cut(s)	368, 2759
BmgT120I	GGNCC	4 cut(s)	752, 980, 995, 2401
BmrFI	CCNGG	4 cut(s)	1534, 2507, 2876, 2934
BmrI	ACTGGG	2 cut(s)	1366, 1568
BmsI	GCATC	5 cut(s)	1375, 1661, 1951, 2467, 2642
BmuI	ACTGGG	2 cut(s)	1366, 1568
BoxI	GACNNNNGTC	1 cut(s)	2399
BpiI	GAAGAC	2 cut(s)	2289, 2476
BplI	GAGNNNNNCTC	4 cut(s)	190, 222, 1463, 1495
Bpu10I	CCTNAGC	1 cut(s)	2657
Bpu1102I	GCTNAGC	1 cut(s)	197
Bpu14I	TTCGAA	2 cut(s)	1178, 1386
BpuEI	CTTGAG	5 cut(s)	969, 1132, 1928, 2183, 2447
BpuMI	CCSGG	1 cut(s)	2934
BsaAI	YACGTR	1 cut(s)	1553
BsaBI	GATNNNNATC	2 cut(s)	1320, 1415
BsaHI	GRCGYC	3 cut(s)	1777, 1994, 2872
BsaJI	CCNNGG	4 cut(s)	115, 1143, 2566, 2875
BsaWI	WCCGGW	4 cut(s)	128, 1459, 1658, 2949
BsaXI	ACNNNNNCTCC	2 cut(s)	807, 837
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 848, 1579, 2519, 2875
Bse118I	RCCGGY	1 cut(s)	2949
Bse1I	ACTGG	6 cut(s)	715, 1361, 1512, 1574, 1935, 2634
Bse3DI	GCAATG	4 cut(s)	271, 734, 1934, 2239
Bse8I	GATNNNNATC	2 cut(s)	1320, 1415
BseAI	TCCGGA	1 cut(s)	128
BseBI	CCWGG	3 cut(s)	1534, 2507, 2876
BseDI	CCNNGG	4 cut(s)	115, 1143, 2566, 2875
BseGI	GGATG	5 cut(s)	995, 1366, 1416, 1755, 2725
BseJI	GATNNNNATC	2 cut(s)	1320, 1415
BseLI	CCNNNNNNNGG	5 cut(s)	12, 848, 1579, 2519, 2875
BseMI	GCAATG	4 cut(s)	271, 734, 1934, 2239
BseMII	CTCAG	5 cut(s)	188, 390, 1494, 1833, 2648
BseNI	ACTGG	6 cut(s)	715, 1361, 1512, 1574, 1935, 2634
BseRI	GAGGAG	2 cut(s)	883, 1694
BseYI	CCCAGC	2 cut(s)	452, 1375
BsgI	GTGCAG	1 cut(s)	2457
Bsh1236I	CGCG	2 cut(s)	178, 2904
BshFI	GGCC	7 cut(s)	874, 997, 1010, 1415, 2285, 2688, 2901
BshNI	GGYRCC	2 cut(s)	1536, 1831
BshTI	ACCGGT	1 cut(s)	2949
BsiHKAI	GWGCWC	2 cut(s)	30, 1857
BsiHKCI	CYCGRG	5 cut(s)	12, 421, 1541, 2664, 2728
BsiSI	CCGG	5 cut(s)	129, 1460, 1659, 2934, 2950
BsiWI	CGTACG	1 cut(s)	2266
BslFI	GGGAC	1 cut(s)	1374
BslI	CCNNNNNNNGG	5 cut(s)	12, 848, 1579, 2519, 2875
BsmAI	GTCTC	8 cut(s)	178, 185, 1020, 1682, 1784, 2097, 2387, 2613
BsmBI	CGTCTC	4 cut(s)	178, 185, 1020, 1784
BsmFI	GGGAC	1 cut(s)	1374
BsmI	GAATGC	2 cut(s)	1727, 2658
BsnI	GGCC	7 cut(s)	874, 997, 1010, 1415, 2285, 2688, 2901
BsoBI	CYCGRG	5 cut(s)	12, 421, 1541, 2664, 2728
Bsp119I	TTCGAA	2 cut(s)	1178, 1386
Bsp1286I	GDGCHC	4 cut(s)	30, 203, 1857, 2665
Bsp13I	TCCGGA	1 cut(s)	128
Bsp1720I	GCTNAGC	1 cut(s)	197
BspANI	GGCC	7 cut(s)	874, 997, 1010, 1415, 2285, 2688, 2901
BspCNI	CTCAG	5 cut(s)	189, 391, 1493, 1832, 2649
BspEI	TCCGGA	1 cut(s)	128
BspFNI	CGCG	2 cut(s)	178, 2904
BspMAI	CTGCAG	1 cut(s)	2446
BspQI	GCTCTTC	1 cut(s)	2007
BspT104I	TTCGAA	2 cut(s)	1178, 1386
BspT107I	GGYRCC	2 cut(s)	1536, 1831
BsrBI	CCGCTC	1 cut(s)	35
BsrDI	GCAATG	4 cut(s)	271, 734, 1934, 2239
BsrFI	RCCGGY	1 cut(s)	2949
BsrI	ACTGG	6 cut(s)	715, 1361, 1512, 1574, 1935, 2634
BssAI	RCCGGY	1 cut(s)	2949
BssECI	CCNNGG	4 cut(s)	115, 1143, 2566, 2875
BssNAI	GTATAC	1 cut(s)	112
BssNI	GRCGYC	3 cut(s)	1777, 1994, 2872
BssSI	CACGAG	2 cut(s)	700, 2709
BssT1I	CCWWGG	1 cut(s)	1143
Bst1107I	GTATAC	1 cut(s)	112
Bst2BI	CACGAG	2 cut(s)	700, 2709
Bst2UI	CCWGG	3 cut(s)	1534, 2507, 2876
Bst4CI	ACNGT	6 cut(s)	172, 679, 913, 1628, 1670, 2352
Bst6I	CTCTTC	3 cut(s)	1464, 1698, 2007
BstACI	GRCGYC	3 cut(s)	1777, 1994, 2872
BstBAI	YACGTR	1 cut(s)	1553
BstBI	TTCGAA	2 cut(s)	1178, 1386
BstC8I	GCNNGC	1 cut(s)	2283
BstDSI	CCRYGG	1 cut(s)	2566
BstENI	CCTNNNNNAGG	1 cut(s)	846
BstF5I	GGATG	5 cut(s)	995, 1366, 1416, 1755, 2725
BstFNI	CGCG	2 cut(s)	178, 2904
BstHHI	GCGC	1 cut(s)	1239
BstMAI	GTCTC	8 cut(s)	178, 185, 1020, 1682, 1784, 2097, 2387, 2613
BstMWI	GCNNNNNNNGC	7 cut(s)	769, 1019, 1603, 1886, 1892, 1895, 2156
BstNI	CCWGG	3 cut(s)	1534, 2507, 2876
BstNSI	RCATGY	2 cut(s)	1189, 2767
BstPAI	GACNNNNGTC	1 cut(s)	2399
BstSCI	CCNGG	4 cut(s)	1532, 2505, 2874, 2932
BstSFI	CTRYAG	1 cut(s)	2442
BstUI	CGCG	2 cut(s)	178, 2904
BstV2I	GAAGAC	2 cut(s)	2289, 2476
BstX2I	RGATCY	6 cut(s)	63, 131, 1315, 1483, 2302, 2509
BstXI	CCANNNNNNTGG	1 cut(s)	1144
BstYI	RGATCY	6 cut(s)	63, 131, 1315, 1483, 2302, 2509
BstZ17I	GTATAC	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	2198
BsuRI	GGCC	7 cut(s)	874, 997, 1010, 1415, 2285, 2688, 2901
BtgI	CCRYGG	1 cut(s)	2566
BtrI	CACGTC	2 cut(s)	368, 2759
BtsCI	GGATG	5 cut(s)	995, 1366, 1416, 1755, 2725
BtsIMutI	CAGTG	3 cut(s)	708, 1581, 2109
Cac8I	GCNNGC	1 cut(s)	2283
CaiI	CAGNNNCTG	1 cut(s)	1356
CfoI	GCGC	1 cut(s)	1239
Cfr10I	RCCGGY	1 cut(s)	2949
Cfr13I	GGNCC	4 cut(s)	752, 980, 995, 2401
CseI	GACGC	3 cut(s)	167, 1766, 2880
CsiI	ACCWGGT	1 cut(s)	1532
Csp6I	GTAC	9 cut(s)	227, 381, 1537, 1832, 2077, 2267, 2503, 2696, 2833
CspAI	ACCGGT	1 cut(s)	2949
CviAII	CATG	6 cut(s)	494, 1186, 1202, 1309, 2225, 2764
CviQI	GTAC	9 cut(s)	227, 381, 1537, 1832, 2077, 2267, 2503, 2696, 2833
DriI	GACNNNNNGTC	1 cut(s)	2605
EaeI	YGGCCR	2 cut(s)	1008, 1413
Eam1104I	CTCTTC	3 cut(s)	1464, 1698, 2007
Eam1105I	GACNNNNNGTC	1 cut(s)	2605
EarI	CTCTTC	3 cut(s)	1464, 1698, 2007
Ecl136II	GAGCTC	2 cut(s)	28, 1855
Eco130I	CCWWGG	1 cut(s)	1143
Eco147I	AGGCCT	2 cut(s)	874, 2285
Eco24I	GRGCYC	4 cut(s)	30, 203, 1857, 2665
Eco32I	GATATC	1 cut(s)	1548
Eco47I	GGWCC	3 cut(s)	752, 980, 2401
Eco53kI	GAGCTC	2 cut(s)	28, 1855
Eco57I	CTGAAG	5 cut(s)	422, 1311, 2283, 2337, 2441
Eco72I	CACGTG	1 cut(s)	1553
Eco88I	CYCGRG	5 cut(s)	12, 421, 1541, 2664, 2728
EcoICRI	GAGCTC	2 cut(s)	28, 1855
EcoNI	CCTNNNNNAGG	1 cut(s)	846
EcoRI	GAATTC	1 cut(s)	1902
EcoRII	CCWGG	3 cut(s)	1532, 2505, 2874
EcoRV	GATATC	1 cut(s)	1548
EcoT14I	CCWWGG	1 cut(s)	1143
EcoT22I	ATGCAT	1 cut(s)	2482
EcoT38I	GRGCYC	4 cut(s)	30, 203, 1857, 2665
ErhI	CCWWGG	1 cut(s)	1143
Esp3I	CGTCTC	4 cut(s)	178, 185, 1020, 1784
FaeI	CATG	6 cut(s)	497, 1189, 1205, 1312, 2228, 2767
FalI	AAGNNNNNCTT	4 cut(s)	1173, 1205, 2233, 2265
FaqI	GGGAC	1 cut(s)	1374
FatI	CATG	6 cut(s)	493, 1185, 1201, 1308, 2224, 2763
FauI	CCCGC	3 cut(s)	664, 1305, 2124
FblI	GTMKAC	2 cut(s)	111, 2724
FokI	GGATG	5 cut(s)	1002, 1353, 1403, 1762, 2732
FriOI	GRGCYC	4 cut(s)	30, 203, 1857, 2665
FspBI	CTAG	5 cut(s)	107, 254, 417, 489, 1491
GlaI	GCGC	1 cut(s)	1238
GsaI	CCCAGC	2 cut(s)	456, 1379
HaeIII	GGCC	7 cut(s)	874, 997, 1010, 1415, 2285, 2688, 2901
HapII	CCGG	5 cut(s)	129, 1460, 1659, 2934, 2950
HgaI	GACGC	3 cut(s)	167, 1766, 2880
HhaI	GCGC	1 cut(s)	1239
Hin1I	GRCGYC	3 cut(s)	1777, 1994, 2872
Hin1II	CATG	6 cut(s)	497, 1189, 1205, 1312, 2228, 2767
Hin6I	GCGC	1 cut(s)	1237
HinP1I	GCGC	1 cut(s)	1237
HincII	GTYRAC	3 cut(s)	1465, 2263, 2947
HindII	GTYRAC	3 cut(s)	1465, 2263, 2947
HindIII	AAGCTT	2 cut(s)	1061, 2423
HpaI	GTTAAC	1 cut(s)	2947
HpaII	CCGG	5 cut(s)	129, 1460, 1659, 2934, 2950
HphI	GGTGA	5 cut(s)	22, 75, 551, 919, 2891
Hpy166II	GTNNAC	9 cut(s)	112, 805, 826, 1465, 1966, 2263, 2698, 2725, 2947
Hpy8I	GTNNAC	9 cut(s)	112, 805, 826, 1465, 1966, 2263, 2698, 2725, 2947
Hpy99I	CGWCG	4 cut(s)	59, 379, 2843, 2874
HpyCH4III	ACNGT	6 cut(s)	172, 679, 913, 1628, 1670, 2352
HpyCH4IV	ACGT	5 cut(s)	367, 1552, 1994, 2265, 2758
HpyF10VI	GCNNNNNNNGC	7 cut(s)	769, 1019, 1603, 1886, 1892, 1895, 2156
HpySE526I	ACGT	5 cut(s)	367, 1552, 1994, 2265, 2758
Hsp92I	GRCGYC	3 cut(s)	1777, 1994, 2872
Hsp92II	CATG	6 cut(s)	497, 1189, 1205, 1312, 2228, 2767
HspAI	GCGC	1 cut(s)	1237
Kpn2I	TCCGGA	1 cut(s)	128
KpnI	GGTACC	2 cut(s)	1540, 1835
KspAI	GTTAAC	1 cut(s)	2947
LguI	GCTCTTC	1 cut(s)	2007
LmnI	GCTCC	4 cut(s)	25, 852, 1384, 2562
LweI	GCATC	5 cut(s)	1375, 1661, 1951, 2467, 2642
MabI	ACCWGGT	1 cut(s)	1532
MaeI	CTAG	5 cut(s)	107, 254, 417, 489, 1491
MaeII	ACGT	5 cut(s)	367, 1552, 1994, 2265, 2758
MaeIII	GTNAC	9 cut(s)	269, 512, 706, 907, 1045, 2759, 2855, 2864, 2893
MbiI	CCGCTC	1 cut(s)	35
MflI	RGATCY	6 cut(s)	63, 131, 1315, 1483, 2302, 2509
MhlI	GDGCHC	4 cut(s)	30, 203, 1857, 2665
MlsI	TGGCCA	1 cut(s)	1415
MluNI	TGGCCA	1 cut(s)	1415
MlyI	GAGTC	6 cut(s)	224, 510, 1154, 1684, 1811, 2720
MmeI	TCCRAC	8 cut(s)	529, 793, 865, 895, 1665, 1931, 2218, 2337
Mox20I	TGGCCA	1 cut(s)	1415
Mph1103I	ATGCAT	1 cut(s)	2482
MroI	TCCGGA	1 cut(s)	128
MroXI	GAANNNNTTC	2 cut(s)	1296, 2245
MscI	TGGCCA	1 cut(s)	1415
MslI	CAYNNNNRTG	1 cut(s)	2164
Msp20I	TGGCCA	1 cut(s)	1415
MspA1I	CMGCKG	3 cut(s)	760, 2122, 2441
MspI	CCGG	5 cut(s)	129, 1460, 1659, 2934, 2950
MspR9I	CCNGG	4 cut(s)	1534, 2507, 2876, 2934
Mva1269I	GAATGC	2 cut(s)	1727, 2658
MvaI	CCWGG	3 cut(s)	1534, 2507, 2876
MvnI	CGCG	2 cut(s)	178, 2904
MwoI	GCNNNNNNNGC	7 cut(s)	769, 1019, 1603, 1886, 1892, 1895, 2156
NciI	CCSGG	1 cut(s)	2934
NlaIII	CATG	6 cut(s)	497, 1189, 1205, 1312, 2228, 2767
NmeAIII	GCCGAG	2 cut(s)	27, 210
NmuCI	GTSAC	5 cut(s)	512, 706, 907, 1045, 2759
NsiI	ATGCAT	1 cut(s)	2482
NspI	RCATGY	2 cut(s)	1189, 2767
NspV	TTCGAA	2 cut(s)	1178, 1386
OliI	CACNNNNGTG	1 cut(s)	2164
PaeR7I	CTCGAG	3 cut(s)	421, 1541, 2728
PceI	AGGCCT	2 cut(s)	874, 2285
PciSI	GCTCTTC	1 cut(s)	2007
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	2 cut(s)	1727, 2658
PdmI	GAANNNNTTC	2 cut(s)	1296, 2245
Pfl23II	CGTACG	1 cut(s)	2266
PinAI	ACCGGT	1 cut(s)	2949
PleI	GAGTC	6 cut(s)	223, 509, 1154, 1684, 1811, 2720
PmaCI	CACGTG	1 cut(s)	1553
PmlI	CACGTG	1 cut(s)	1553
PpsI	GAGTC	6 cut(s)	223, 509, 1154, 1684, 1811, 2720
Ppu21I	YACGTR	1 cut(s)	1553
PshAI	GACNNNNGTC	1 cut(s)	2399
Psp124BI	GAGCTC	2 cut(s)	30, 1857
Psp6I	CCWGG	3 cut(s)	1532, 2505, 2874
PspCI	CACGTG	1 cut(s)	1553
PspFI	CCCAGC	2 cut(s)	452, 1375
PspGI	CCWGG	3 cut(s)	1532, 2505, 2874
PspLI	CGTACG	1 cut(s)	2266
PspPI	GGNCC	4 cut(s)	752, 980, 995, 2401
PspXI	VCTCGAGB	2 cut(s)	421, 2728
PstI	CTGCAG	1 cut(s)	2446
PstNI	CAGNNNCTG	1 cut(s)	1356
PsuI	RGATCY	6 cut(s)	63, 131, 1315, 1483, 2302, 2509
PvuII	CAGCTG	2 cut(s)	2122, 2441
RsaI	GTAC	9 cut(s)	228, 382, 1538, 1833, 2078, 2268, 2504, 2697, 2834
RsaNI	GTAC	9 cut(s)	227, 381, 1537, 1832, 2077, 2267, 2503, 2696, 2833
RseI	CAYNNNNRTG	1 cut(s)	2164
SacI	GAGCTC	2 cut(s)	30, 1857
SapI	GCTCTTC	1 cut(s)	2007
Sau96I	GGNCC	4 cut(s)	752, 980, 995, 2401
ScaI	AGTACT	1 cut(s)	382
SchI	GAGTC	6 cut(s)	224, 510, 1154, 1684, 1811, 2720
ScrFI	CCNGG	4 cut(s)	1534, 2507, 2876, 2934
SduI	GDGCHC	4 cut(s)	30, 203, 1857, 2665
SexAI	ACCWGGT	1 cut(s)	1532
SfaNI	GCATC	5 cut(s)	1375, 1661, 1951, 2467, 2642
SfcI	CTRYAG	1 cut(s)	2442
Sfr274I	CTCGAG	3 cut(s)	421, 1541, 2728
SfuI	TTCGAA	2 cut(s)	1178, 1386
SinI	GGWCC	3 cut(s)	752, 980, 2401
SlaI	CTCGAG	3 cut(s)	421, 1541, 2728
SmiMI	CAYNNNNRTG	1 cut(s)	2164
SmlI	CTYRAG	8 cut(s)	421, 984, 1111, 1541, 1907, 2162, 2426, 2728
SmoI	CTYRAG	8 cut(s)	421, 984, 1111, 1541, 1907, 2162, 2426, 2728
SseBI	AGGCCT	2 cut(s)	874, 2285
SspI	AATATT	1 cut(s)	2453
SspMI	CTAG	5 cut(s)	107, 254, 417, 489, 1491
SstI	GAGCTC	2 cut(s)	30, 1857
StuI	AGGCCT	2 cut(s)	874, 2285
StyD4I	CCNGG	4 cut(s)	1532, 2505, 2874, 2932
StyI	CCWWGG	1 cut(s)	1143
TaaI	ACNGT	6 cut(s)	172, 679, 913, 1628, 1670, 2352
TaiI	ACGT	5 cut(s)	370, 1555, 1997, 2268, 2761
TaqI	TCGA	8 cut(s)	42, 153, 377, 422, 1178, 1386, 1542, 2729
TatI	WGTACW	2 cut(s)	226, 380
TauI	GCSGC	5 cut(s)	54, 760, 1013, 1889, 2904
TscAI	CASTG	3 cut(s)	715, 1581, 2116
TseFI	GTSAC	5 cut(s)	512, 706, 907, 1045, 2759
Tsp45I	GTSAC	5 cut(s)	512, 706, 907, 1045, 2759
TspDTI	ATGAA	4 cut(s)	1104, 1190, 1788, 2660
TspGWI	ACGGA	3 cut(s)	425, 1044, 1732
TspRI	CASTG	3 cut(s)	715, 1581, 2116
VpaK11BI	GGWCC	3 cut(s)	752, 980, 2401
XagI	CCTNNNNNAGG	1 cut(s)	846
XapI	RAATTY	3 cut(s)	1173, 1902, 2409
XbaI	TCTAGA	1 cut(s)	488
XceI	RCATGY	2 cut(s)	1189, 2767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1144
XhoI	CTCGAG	3 cut(s)	421, 1541, 2728
XmiI	GTMKAC	2 cut(s)	111, 2724
XmnI	GAANNNNTTC	2 cut(s)	1296, 2245
XspI	CTAG	5 cut(s)	107, 254, 417, 489, 1491
ZraI	GACGTC	1 cut(s)	1995
ZrmI	AGTACT	1 cut(s)	382
Zsp2I	ATGCAT	1 cut(s)	2482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.