Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8432961.1

Orthogroup ID

OG0010016

Physical Location & Seq

Genomic Coordinates Reverse (-)

51 .. 1199

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8432961.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atggccaagcctgagccgagggctcgcactgtccttgaaccgctgtcatacttcaatctatctgagcagtctcgtgcgccggttagatccctcgctatctccaatgtgtctgattcgcagtgtctaatataccttgggactcagtttggagggctatttttgttctctgtagacaataaggatctcaatgctgcatctgcgtccgatccttcgaacaacccttcggtcccacagagcattaagtttgtgcgaaacgtcttggttggaaattcctcggtggactatatacatgtgtttggtgagattgggaagctgttggtgcttttggatggctttttgtttttggttgattcacttctgctgcagccagtgaagaagttgagtttcctgagaggaatttctgtcattactaggagattgcgaagtagtgaatcagagtgctcaaatttgtcagaaggtgctgccagttcatcagagtatacgagcacaagtcagcggtttttgaaaaaattgggaggtgggataagagcaaatggcttgaaaatgaaagaatcaacacagcaccgggtgggcaatcatgtcttttctgtcgtgattgggaaaagattgatattgatagagtttgttttgagtaatagagtaggtaaaagtgaccaagacatcgatgatgggtcttttgttattctaaaagaaattccatgtatcgatggggttatggccatggtatggctcaatgattcgataattgtgagcacacttaatgggtatactttgttttcatgtgttacgggacaaagtggtgtcatattttcgttaccagatgtttctagtccaccacggcttaaactgttgtgtaaagaatggaatgttctcttgttggtggacaatgtaggcatcatagcaaatgcccacgggcagccggttggtgggagccttgtgttccatcgtgacccagattctattggagagatatcttcatatgtggttgttgcaagggatggaaagatggaactgtatcataagaaaacaggtcggtgtgttcagatggtcacttttggtggtgaaggggttggagggccttgcattgttgcggatgaggaagatggaagtggaaaacttattgtcgttgcaacacccactaaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0023052 GO:0046332 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

CNH Clathrin Vps39_1 Vps39_2

Protein Analysis

382

Amino Acids

41.25

Weight (kDa)

7.59

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22860
fragaria_vesca	FvH4_3g11790
malus_domestica	MD05G1259300.v1.1 MD10G1238900.v1.1
prunus_persica	Prupe.4G105500_v2.0.a1 Prupe.4G105500_v2.0.a1 Prupe.4G105500_v2.0.a1
pyrus_communis	pycom05g24370 pycom10g19990
rosa_chinensis	RchiOBHm_Chr5g0019211
rosa_laevigata	RLG00000032428
rosa_multiflora	Rmu_co8432961.1_g000001 Rmu_sc0002561.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058780 Rroxscaffold_1G00074160
rosa_rugosa	Rorug05G0048300
rosa_samantha	Rh5AG139700 Rh5BG138700 Rh5CG150100 Rh5DG139300
rosa_wichuraiana	Rw5G012420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	726
AccI	GTMKAC	3 cut(s)	171, 479, 767
AciI	CCGC	3 cut(s)	41, 496, 1091
AclWI	GGATC	3 cut(s)	81, 189, 200
AcoI	YGGCCR	2 cut(s)	3, 717
AcsI	RAATTY	4 cut(s)	268, 396, 445, 693
AdeI	CACNNNGTG	1 cut(s)	568
AfiI	CCNNNNNNNGG	2 cut(s)	726, 926
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	4 cut(s)	38, 55, 505, 541
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
Alw21I	GWGCWC	3 cut(s)	443, 488, 755
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	3 cut(s)	81, 189, 200
AoxI	GGCC	3 cut(s)	3, 717, 1076
ApeKI	GCWGC	5 cut(s)	191, 361, 364, 461, 916
ApoI	RAATTY	4 cut(s)	268, 396, 445, 693
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	2 cut(s)	226, 1076
AsuC2I	CCSGG	1 cut(s)	566
AsuHPI	GGTGA	2 cut(s)	311, 1073
AsuII	TTCGAA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	226
BalI	TGGCCA	2 cut(s)	5, 719
BanII	GRGCYC	1 cut(s)	25
BauI	CACGAG	1 cut(s)	72
Bbv12I	GWGCWC	3 cut(s)	443, 488, 755
BbvI	GCAGC	5 cut(s)	178, 348, 376, 448, 928
BccI	CCATC	8 cut(s)	323, 662, 701, 951, 992, 1000, 1039, 1097
BceAI	ACGGC	1 cut(s)	854
BcnI	CCSGG	1 cut(s)	566
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	2 cut(s)	411, 828
BfmI	CTRYAG	2 cut(s)	168, 362
BisI	GCNGC	5 cut(s)	192, 362, 365, 462, 917
BlsI	GCNGC	5 cut(s)	193, 363, 366, 463, 918
Bme1390I	CCNGG	1 cut(s)	566
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	226, 1076
BmiI	GGNNCC	2 cut(s)	228, 932
BmrFI	CCNGG	1 cut(s)	566
BmsI	GCATC	2 cut(s)	203, 903
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu14I	TTCGAA	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	566
Bsa29I	ATCGAT	2 cut(s)	663, 705
BsaJI	CCNNGG	6 cut(s)	17, 133, 273, 720, 836, 910
Bsc4I	CCNNNNNNNGG	2 cut(s)	726, 926
Bse118I	RCCGGY	2 cut(s)	79, 919
Bse1I	ACTGG	2 cut(s)	368, 465
BseCI	ATCGAT	2 cut(s)	663, 705
BseDI	CCNNGG	6 cut(s)	17, 133, 273, 720, 836, 910
BseGI	GGATG	3 cut(s)	334, 1003, 1099
BseLI	CCNNNNNNNGG	2 cut(s)	726, 926
BseMII	CTCAG	3 cut(s)	54, 155, 380
BseNI	ACTGG	2 cut(s)	368, 465
BseXI	GCAGC	5 cut(s)	178, 348, 376, 448, 928
BshFI	GGCC	3 cut(s)	5, 719, 1078
BshVI	ATCGAT	2 cut(s)	663, 705
BsiHKAI	GWGCWC	3 cut(s)	443, 488, 755
BsiSI	CCGG	3 cut(s)	80, 565, 920
BslFI	GGGAC	3 cut(s)	151, 212, 804
BslI	CCNNNNNNNGG	2 cut(s)	726, 926
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	3 cut(s)	151, 212, 804
BsnI	GGCC	3 cut(s)	5, 719, 1078
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1286I	GDGCHC	4 cut(s)	25, 443, 488, 755
Bsp143I	GATC	3 cut(s)	86, 181, 205
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	3 cut(s)	41, 496, 1091
BspANI	GGCC	3 cut(s)	5, 719, 1078
BspCNI	CTCAG	4 cut(s)	4, 55, 154, 381
BspDI	ATCGAT	2 cut(s)	663, 705
BspLI	GGNNCC	2 cut(s)	228, 932
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	3 cut(s)	81, 189, 200
BspT104I	TTCGAA	1 cut(s)	212
BsrFI	RCCGGY	2 cut(s)	79, 919
BsrI	ACTGG	2 cut(s)	368, 465
BssAI	RCCGGY	2 cut(s)	79, 919
BssECI	CCNNGG	6 cut(s)	17, 133, 273, 720, 836, 910
BssMI	GATC	3 cut(s)	86, 181, 205
BssNAI	GTATAC	2 cut(s)	480, 768
BssSI	CACGAG	1 cut(s)	72
BssT1I	CCWWGG	2 cut(s)	133, 720
Bst1107I	GTATAC	2 cut(s)	480, 768
Bst2BI	CACGAG	1 cut(s)	72
Bst4CI	ACNGT	3 cut(s)	31, 849, 1014
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	5 cut(s)	12, 63, 141, 389, 1140
BstDSI	CCRYGG	3 cut(s)	720, 836, 910
BstF5I	GGATG	3 cut(s)	334, 1003, 1099
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	3 cut(s)	89, 184, 208
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	3 cut(s)	86, 181, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 319
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	564
BstSFI	CTRYAG	2 cut(s)	168, 362
BstV1I	GCAGC	5 cut(s)	178, 348, 376, 448, 928
BstX2I	RGATCY	2 cut(s)	86, 181
BstYI	RGATCY	2 cut(s)	86, 181
BstZ17I	GTATAC	2 cut(s)	480, 768
Bsu15I	ATCGAT	2 cut(s)	663, 705
BsuRI	GGCC	3 cut(s)	5, 719, 1078
BsuTUI	ATCGAT	2 cut(s)	663, 705
BtgI	CCRYGG	3 cut(s)	720, 836, 910
BtsCI	GGATG	3 cut(s)	334, 1003, 1099
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	3 cut(s)	27, 125, 375
Cac8I	GCNNGC	1 cut(s)	25
CfoI	GCGC	1 cut(s)	79
Cfr10I	RCCGGY	2 cut(s)	79, 919
Cfr13I	GGNCC	2 cut(s)	226, 1076
ClaI	ATCGAT	2 cut(s)	663, 705
CseI	GACGC	1 cut(s)	189
CviAII	CATG	5 cut(s)	290, 578, 699, 721, 780
DdeI	CTNAG	5 cut(s)	12, 63, 141, 389, 1140
DpnI	GATC	3 cut(s)	88, 183, 207
DpnII	GATC	3 cut(s)	86, 181, 205
DraIII	CACNNNGTG	1 cut(s)	568
EaeI	YGGCCR	2 cut(s)	3, 717
Eco130I	CCWWGG	2 cut(s)	133, 720
Eco24I	GRGCYC	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	972
Eco47I	GGWCC	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	1076
EcoRV	GATATC	1 cut(s)	972
EcoT14I	CCWWGG	2 cut(s)	133, 720
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	133, 720
FaeI	CATG	5 cut(s)	293, 581, 702, 724, 783
FaqI	GGGAC	3 cut(s)	151, 212, 804
FatI	CATG	5 cut(s)	289, 577, 698, 720, 779
FauNDI	CATATG	1 cut(s)	979
FblI	GTMKAC	3 cut(s)	171, 479, 767
Fnu4HI	GCNGC	5 cut(s)	192, 362, 365, 462, 917
FokI	GGATG	3 cut(s)	341, 1010, 1106
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	5 cut(s)	192, 362, 365, 462, 917
FspBI	CTAG	2 cut(s)	411, 828
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	5 cut(s)	192, 362, 365, 462, 917
HaeIII	GGCC	3 cut(s)	5, 719, 1078
HapII	CCGG	3 cut(s)	80, 565, 920
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	5 cut(s)	293, 581, 702, 724, 783
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	7 cut(s)	113, 139, 350, 431, 551, 737, 956
HpaII	CCGG	3 cut(s)	80, 565, 920
HphI	GGTGA	2 cut(s)	311, 1073
Hpy166II	GTNNAC	6 cut(s)	172, 280, 480, 768, 833, 883
Hpy188I	TCNGA	7 cut(s)	64, 112, 205, 436, 454, 475, 1044
Hpy188III	TCNNGA	3 cut(s)	388, 592, 947
Hpy8I	GTNNAC	6 cut(s)	172, 280, 480, 768, 833, 883
HpyAV	CCTTC	4 cut(s)	219, 231, 449, 1058
HpyCH4III	ACNGT	3 cut(s)	31, 849, 1014
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	5 cut(s)	194, 364, 992, 1083, 1130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 319
HpyF3I	CTNAG	5 cut(s)	12, 63, 141, 389, 1140
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	5 cut(s)	293, 581, 702, 724, 783
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	86, 181, 205
LmnI	GCTCC	1 cut(s)	930
Lsp1109I	GCAGC	5 cut(s)	178, 348, 376, 448, 928
LweI	GCATC	2 cut(s)	203, 903
MaeI	CTAG	2 cut(s)	411, 828
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	5 cut(s)	650, 784, 813, 947, 1048
MalI	GATC	3 cut(s)	88, 183, 207
MboI	GATC	3 cut(s)	86, 181, 205
MboII	GAAGA	3 cut(s)	385, 966, 1112
MflI	RGATCY	2 cut(s)	86, 181
MhlI	GDGCHC	4 cut(s)	25, 443, 488, 755
MlsI	TGGCCA	2 cut(s)	5, 719
MluCI	AATT	6 cut(s)	268, 396, 445, 509, 693, 744
MluNI	TGGCCA	2 cut(s)	5, 719
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	2 cut(s)	244, 1051
MnlI	CCTC	8 cut(s)	12, 101, 143, 283, 386, 509, 1067, 1090
Mox20I	TGGCCA	2 cut(s)	5, 719
MscI	TGGCCA	2 cut(s)	5, 719
MseI	TTAA	3 cut(s)	240, 759, 843
Msp20I	TGGCCA	2 cut(s)	5, 719
MspA1I	CMGCKG	2 cut(s)	43, 496
MspI	CCGG	3 cut(s)	80, 565, 920
MspR9I	CCNGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	197, 319
NciI	CCSGG	1 cut(s)	566
NcoI	CCATGG	1 cut(s)	720
NdeI	CATATG	1 cut(s)	979
NdeII	GATC	3 cut(s)	86, 181, 205
NlaIII	CATG	5 cut(s)	293, 581, 702, 724, 783
NlaIV	GGNNCC	2 cut(s)	228, 932
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	3 cut(s)	650, 947, 1048
NspI	RCATGY	1 cut(s)	293
NspV	TTCGAA	1 cut(s)	212
PciI	ACATGT	1 cut(s)	289
PfeI	GAWTC	6 cut(s)	113, 350, 431, 551, 737, 956
PflMI	CCANNNNNTGG	1 cut(s)	726
PkrI	GCNGC	5 cut(s)	193, 363, 366, 463, 918
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PscI	ACATGT	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	228, 932
PspPI	GGNCC	2 cut(s)	226, 1076
PstI	CTGCAG	1 cut(s)	366
PsuI	RGATCY	2 cut(s)	86, 181
SaqAI	TTAA	3 cut(s)	240, 759, 843
SatI	GCNGC	5 cut(s)	192, 362, 365, 462, 917
Sau3AI	GATC	3 cut(s)	86, 181, 205
Sau96I	GGNCC	2 cut(s)	226, 1076
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	566
SduI	GDGCHC	4 cut(s)	25, 443, 488, 755
SetI	ASST	8 cut(s)	135, 258, 315, 460, 520, 646, 1033, 1146
SfaNI	GCATC	2 cut(s)	203, 903
SfcI	CTRYAG	2 cut(s)	168, 362
SfuI	TTCGAA	1 cut(s)	212
SinI	GGWCC	1 cut(s)	226
Sse9I	AATT	6 cut(s)	268, 396, 445, 509, 693, 744
SsiI	CCGC	3 cut(s)	41, 496, 1091
SspMI	CTAG	2 cut(s)	411, 828
StyD4I	CCNGG	1 cut(s)	564
StyI	CCWWGG	2 cut(s)	133, 720
TaaI	ACNGT	3 cut(s)	31, 849, 1014
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	4 cut(s)	212, 663, 705, 740
TaqII	GACCGA	1 cut(s)	214
TasI	AATT	6 cut(s)	268, 396, 445, 509, 693, 744
TfiI	GAWTC	6 cut(s)	113, 350, 431, 551, 737, 956
Tru1I	TTAA	3 cut(s)	240, 759, 843
Tru9I	TTAA	3 cut(s)	240, 759, 843
TscAI	CASTG	3 cut(s)	34, 125, 375
TseFI	GTSAC	3 cut(s)	650, 947, 1048
TseI	GCWGC	5 cut(s)	191, 361, 364, 461, 916
Tsp45I	GTSAC	3 cut(s)	650, 947, 1048
TspDTI	ATGAA	4 cut(s)	459, 560, 768, 966
TspRI	CASTG	3 cut(s)	34, 125, 375
Van91I	CCANNNNNTGG	1 cut(s)	726
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	4 cut(s)	268, 396, 445, 693
XceI	RCATGY	1 cut(s)	293
XmiI	GTMKAC	3 cut(s)	171, 479, 767
XspI	CTAG	2 cut(s)	411, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.