Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010016

Physical Location & Seq

Genomic Coordinates Forward (+)

6963831 .. 6970172

Gene Structure 6342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2478 bp

ATGCAGCACCGGGTGGGAAATCATGTCTTTTCTGTCGTGATTGGTAAAAGATTGATATTGTTAGAGTTTGTTTTGAGTAATAGAGTAGGTAAGATTGATCAAGACGTTGATGATGGGTCTTTTGTTATTCTAAAAGAAATTCAATGTATCGATGGGGTTATGGCCATGGTATGGCTCAATGATTCGATAATTGTGAGCACACTCAATGGGTATACTTTGTTTTCTTGTGTTACGGGACAAAGTGGTGTGATATTTTCGTTACCAGATGTTTCTAGTCCACCACGGCTTAAATTGCTGTGTAAAGAATGGAATGTTCTCTTGTTGGTGGACAATGTTGGCATCATCGCAAATGCCCATGGGCAGCCGGTTGGTGGGAGCTTGGTGTTCCATCGTGACCCTGATTCTATTGGAGAGATATCTTCATATGTGGTTGTTGCAAAGGATGGAAAGATGGAACTGTATCATAAGAAAACAGGTAGGTGTGTTCAGATGGTCACGTTTGGTGGTGAAGGGGTTGGAGGGCCTTGTATTGTTGCGGATGAGGAAGATGGAAGTGGAAAACTTATTGTCGTTGCAACACCCACCAAGGTTATTTGCTATCGGAAGTTACCTTCTGAAGAACAAATTAAAGATCTGTTGAGAAAAAAGAACTTCAAGGAAGCCATCTCCTTAGTGGAGGAGCTTGAGTGTGAAGGCGAATTATCAAAAGATATGCTGTCATTTGTTCATGCTCAAGTGGGTTTTCTCTTACTTTTTGACTTGCATTTTGAGGAAGCAGTGGATCACTTTTTGCAGTCTGAGACAATGCAGCCTTCCGAAGTATTTCCATTTATAATGAGGGATCCAAATCGATGGTCACTACTGGTTCCTAGAAACCGTTATTGGGGTTTGCATCCTCCCCCTGCTCCTCTGGAAGATGTTGTAGATGATGGATTGATGGCGATTCAAAGAGCAATCTTTCTGAGGAAAGCAGGTGTAGAGACTGTGGTAGATGATGCATTTCTCCTTAAACTGCCAAGCCGAGATGATCTATTGGAGTCAGCCATTAAGTCAATTACTAGGTATTTGGAGGTTTCCCGTGATAAAGAGTTGACGCCATCAGTGAGGGAGGGAGTTGACACATTATTAATGTATTTGTACAGAGCTTTAAATAATGTCAATGAAATGGAGAAGCTAGTATCTTCTGCAAATTCTTGTGTTGTGGAGGAGTTGGAAAGTCTCTTAGATGACTCTGGGCATTTGCGAACGCTTGCTTTTCTGTATTCAAGTAAAGGAATGAGCTCAAAGGCTCTTGCTATCTGGCGCATTTTGGCAAGAAATTTTTCATCCGGCCTTTGGAAAGATCATTCTTCTGAGAGTAGTTCACATAGTGTTGGTACAAATATTCTCTCTGGTAAAGAGACTGCTGCAGCTGAGGCGTCAAAGATTCTTGAGGAGTCATCTGATTCACAGCTGGTTCTACAACATCTTGGATGGGTTGCAGAAATCAACCAGGTCTTTGCAGTTCAGATTTTGACATCGGAGAAAAGAGACAATCAGCTCCCACCAGAGGAAGTGATTGCAGCTATTGATCCAAAGAAAGTTGAAATACTTCAAAGGTACCTTCAGTGGTTGATTGAAGACCAAGATTCTGATGACACTCAGTTCCACACAATATATGCTCTCTCACTTGCTAAGTCAGCCATTGAATCATTCGAAGCAGAAATTAACTCCAGAATCCTTGATCCTGTAAGAAGAGAGGAGACGGGCATTTCTGAATGTAGCACAAGTGCAATCTTTCAAAGTCCTGTGCGGGAACGACTCCAGATTTTTTTACTGTCTTCAGACTTGTATGACCCAGAGGAAGTTCTCGACTTGATTGAAGGATCAGAATTATGGTCAGAGAAGGCTATTCTTTACAAAAAACTAGGGCAAGAGTCACTGGTACTCCAAATTTTGGCCTTGAAGCTAGAAGACAGTGAAGCTGCTGAGCAATATTGTGCTGAGATTGGCAGACCAGATGTTTATATGCAGTTACTTGATATGTATTTGGATCCACAAGATGGGAAGGAGCCTATGTTTAAGGCTGCTGTTCGCCTACTCCACAATCATGGGGAATCATTGGATCCTTTGCAAGTCTTGGAGAGATTGTCCCCAGATATGCCCCTTCAACTTGCTTCTGAGACTATATTAAGAATGTTGAGAGCTAGACTTCATCATCATCGTCAAGGACGTATTGTGCACAATCTGGCCCGTGCCTTAGATACCGATGCAAGTTTAGCAATATTAGAGGAAAGATCAAGGCATGTGCAGATCAATGATGAAAGCCTTTGTGATTCTTGTCATGCACGCCTGGGAACTAAACTTTTTGCAATGTACCCTGATGACACCATAGTCTGTTATAAGTGTTTTCGTCGCCAGGGTGAATCTACTTCAGTCACTGGTCGCAACTTTAAACAAGATGTCCTAGTGAAACCTGGCTGGCTTGTGACCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0023052 GO:0046332 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

CNH Clathrin Vps39_1 Vps39_2

Protein Analysis

826

Amino Acids

92.6

Weight (kDa)

5.11

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps39_1	PF10366	372 - 448	6.6e-08	Vacuolar sorting protein 39 domain 1
Clathrin	PF00637	599 - 679	7e-07	Region in Clathrin and VPS
zf-Vps39_C	PF10367	760 - 800	1e-16	Vacuolar sorting protein 39 C-terminal zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22860
fragaria_vesca	FvH4_3g11790
malus_domestica	MD05G1259300.v1.1 MD10G1238900.v1.1
prunus_persica	Prupe.4G105500_v2.0.a1 Prupe.4G105500_v2.0.a1 Prupe.4G105500_v2.0.a1
pyrus_communis	pycom05g24370 pycom10g19990
rosa_chinensis	RchiOBHm_Chr5g0019211
rosa_laevigata	RLG00000032428
rosa_multiflora	Rmu_co8432961.1_g000001 Rmu_sc0002561.1_g000003
rosa_roxburghii	Rroxscaffold_1G00058780 Rroxscaffold_1G00074160
rosa_rugosa	Rorug05G0048300
rosa_samantha	Rh5AG139700 Rh5BG138700 Rh5CG150100 Rh5DG139300
rosa_wichuraiana	Rw5G012420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	833, 2382
AarI	CACCTGC	1 cut(s)	962
AasI	GACNNNNNNGTC	1 cut(s)	2372
Acc36I	ACCTGC	1 cut(s)	962
Acc65I	GGTACC	1 cut(s)	1599
AccB1I	GGYRCC	1 cut(s)	1599
AccB7I	CCANNNNNTGG	3 cut(s)	171, 1936, 2042
AccI	GTMKAC	1 cut(s)	212
AciI	CCGC	2 cut(s)	536, 1792
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	4 cut(s)	138, 1189, 1318, 1932
AcuI	CTGAAG	4 cut(s)	636, 1589, 1806, 2397
AcyI	GRCGYC	2 cut(s)	1094, 1418
AdeI	CACNNNGTG	2 cut(s)	13, 1370
AfaI	GTAC	5 cut(s)	1139, 1378, 1601, 1926, 2357
AfiI	CCNNNNNNNGG	7 cut(s)	171, 371, 883, 1335, 1549, 1936, 2042
AjnI	CCWGG	4 cut(s)	1491, 2331, 2397, 2455
AjuI	GAANNNNNNNTTGG	2 cut(s)	865, 897
Alw21I	GWGCWC	3 cut(s)	200, 1283, 2223
Alw26I	GTCTC	7 cut(s)	794, 974, 1223, 1394, 1524, 1736, 2156
Alw44I	GTGCAC	1 cut(s)	2219
AlwNI	CAGNNNCTG	1 cut(s)	2420
AoxI	GGCC	5 cut(s)	162, 521, 1330, 1938, 2229
ApaLI	GTGCAC	1 cut(s)	2219
ApeKI	GCWGC	8 cut(s)	4, 361, 808, 1406, 1409, 1562, 1964, 2066
ApoI	RAATTY	4 cut(s)	138, 1189, 1318, 1932
ArsI	GACNNNNNNTTYG	4 cut(s)	749, 781, 839, 871
AseI	ATTAAT	1 cut(s)	1127
Asp700I	GAANNNNTTC	3 cut(s)	822, 1321, 1590
Asp718I	GGTACC	1 cut(s)	1599
AspLEI	GCGC	1 cut(s)	1305
AspS9I	GGNCC	2 cut(s)	521, 2230
AsuC2I	CCSGG	2 cut(s)	11, 2473
AsuHPI	GGTGA	2 cut(s)	518, 2414
AsuII	TTCGAA	1 cut(s)	1695
BaeGI	GKGCMC	1 cut(s)	2223
BalI	TGGCCA	1 cut(s)	164
BamHI	GGATCC	3 cut(s)	841, 2032, 2104
BanI	GGYRCC	1 cut(s)	1599
BanII	GRGCYC	1 cut(s)	1283
BbsI	GAAGAC	3 cut(s)	1626, 1812, 1959
Bbv12I	GWGCWC	3 cut(s)	200, 1283, 2223
BbvCI	CCTCAGC	1 cut(s)	1413
BbvI	GCAGC	8 cut(s)	16, 373, 820, 1393, 1421, 1574, 1951, 2053
BceAI	ACGGC	1 cut(s)	299
BciT130I	CCWGG	4 cut(s)	1493, 2333, 2399, 2457
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	2 cut(s)	11, 2473
BcoDI	GTCTC	7 cut(s)	794, 974, 1223, 1394, 1524, 1736, 2156
BfaI	CTAG	8 cut(s)	273, 870, 1059, 1175, 1907, 1949, 2187, 2447
BfmI	CTRYAG	1 cut(s)	1407
BfuAI	ACCTGC	1 cut(s)	962
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	8 cut(s)	5, 362, 809, 1407, 1410, 1563, 1965, 2067
BlpI	GCTNAGC	1 cut(s)	1968
BlsI	GCNGC	8 cut(s)	6, 363, 810, 1408, 1411, 1564, 1966, 2068
Bme1390I	CCNGG	6 cut(s)	11, 1493, 2333, 2399, 2457, 2473
BmgT120I	GGNCC	2 cut(s)	521, 2230
BmiI	GGNNCC	6 cut(s)	843, 867, 1601, 2034, 2052, 2106
BmrFI	CCNGG	6 cut(s)	11, 1493, 2333, 2399, 2457, 2473
BmsI	GCATC	4 cut(s)	348, 901, 985, 2239
BpiI	GAAGAC	3 cut(s)	1626, 1812, 1959
BpmI	CTGGAG	2 cut(s)	1696, 1787
Bpu10I	CCTNAGC	1 cut(s)	1413
Bpu1102I	GCTNAGC	1 cut(s)	1968
Bpu14I	TTCGAA	1 cut(s)	1695
BpuEI	CTTGAG	3 cut(s)	704, 717, 1451
BpuMI	CCSGG	2 cut(s)	11, 2473
Bsa29I	ATCGAT	2 cut(s)	150, 850
BsaBI	GATNNNNATC	1 cut(s)	846
BsaHI	GRCGYC	2 cut(s)	1094, 1418
BsaJI	CCNNGG	6 cut(s)	165, 281, 355, 585, 2332, 2398
BsaXI	ACNNNNNCTCC	8 cut(s)	671, 701, 1911, 1941, 2042, 2072, 2114, 2144
Bsc4I	CCNNNNNNNGG	7 cut(s)	171, 371, 883, 1335, 1549, 1936, 2042
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	3 cut(s)	867, 1926, 2425
Bse3DI	GCAATG	1 cut(s)	2358
Bse8I	GATNNNNATC	1 cut(s)	846
BseBI	CCWGG	4 cut(s)	1493, 2333, 2399, 2457
BseCI	ATCGAT	2 cut(s)	150, 850
BseDI	CCNNGG	6 cut(s)	165, 281, 355, 585, 2332, 2398
BseGI	GGATG	5 cut(s)	448, 544, 892, 1325, 1478
BseJI	GATNNNNATC	1 cut(s)	846
BseLI	CCNNNNNNNGG	7 cut(s)	171, 371, 883, 1335, 1549, 1936, 2042
BseMI	GCAATG	1 cut(s)	2358
BseMII	CTCAG	8 cut(s)	789, 953, 1344, 1404, 1655, 1959, 1974, 2151
BseNI	ACTGG	3 cut(s)	867, 1926, 2425
BseRI	GAGGAG	5 cut(s)	692, 897, 1220, 1448, 1754
BseSI	GKGCMC	1 cut(s)	2223
BseXI	GCAGC	8 cut(s)	16, 373, 820, 1393, 1421, 1574, 1951, 2053
BsgI	GTGCAG	1 cut(s)	2309
BshFI	GGCC	5 cut(s)	164, 523, 1332, 1940, 2231
BshNI	GGYRCC	1 cut(s)	1599
BshVI	ATCGAT	2 cut(s)	150, 850
BsiHKAI	GWGCWC	3 cut(s)	200, 1283, 2223
BsiSI	CCGG	4 cut(s)	10, 365, 1329, 2473
BslFI	GGGAC	2 cut(s)	249, 2116
BslI	CCNNNNNNNGG	7 cut(s)	171, 371, 883, 1335, 1549, 1936, 2042
BsmAI	GTCTC	7 cut(s)	794, 974, 1223, 1394, 1524, 1736, 2156
BsmBI	CGTCTC	1 cut(s)	1736
BsmFI	GGGAC	2 cut(s)	249, 2116
BsnI	GGCC	5 cut(s)	164, 523, 1332, 1940, 2231
Bsp119I	TTCGAA	1 cut(s)	1695
Bsp1286I	GDGCHC	3 cut(s)	200, 1283, 2223
Bsp1407I	TGTACA	1 cut(s)	1137
Bsp1720I	GCTNAGC	1 cut(s)	1968
Bsp19I	CCATGG	2 cut(s)	165, 355
BspACI	CCGC	2 cut(s)	536, 1792
BspANI	GGCC	5 cut(s)	164, 523, 1332, 1940, 2231
BspCNI	CTCAG	8 cut(s)	790, 954, 1345, 1405, 1654, 1960, 1975, 2152
BspDI	ATCGAT	2 cut(s)	150, 850
BspLI	GGNNCC	6 cut(s)	843, 867, 1601, 2034, 2052, 2106
BspMAI	CTGCAG	1 cut(s)	1411
BspMI	ACCTGC	1 cut(s)	962
BspT104I	TTCGAA	1 cut(s)	1695
BspT107I	GGYRCC	1 cut(s)	1599
BsrDI	GCAATG	1 cut(s)	2358
BsrFI	RCCGGY	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	1137
BsrI	ACTGG	3 cut(s)	867, 1926, 2425
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	6 cut(s)	165, 281, 355, 585, 2332, 2398
BssNAI	GTATAC	1 cut(s)	213
BssNI	GRCGYC	2 cut(s)	1094, 1418
BssT1I	CCWWGG	3 cut(s)	165, 355, 585
Bst1107I	GTATAC	1 cut(s)	213
Bst4CI	ACNGT	5 cut(s)	459, 878, 985, 1818, 1958
Bst6I	CTCTTC	1 cut(s)	1729
BstACI	GRCGYC	2 cut(s)	1094, 1418
BstAUI	TGTACA	1 cut(s)	1137
BstBI	TTCGAA	1 cut(s)	1695
BstC8I	GCNNGC	3 cut(s)	1251, 2329, 2462
BstDSI	CCRYGG	3 cut(s)	165, 281, 355
BstF5I	GGATG	5 cut(s)	448, 544, 892, 1325, 1478
BstHHI	GCGC	1 cut(s)	1305
BstMAI	GTCTC	7 cut(s)	794, 974, 1223, 1394, 1524, 1736, 2156
BstMWI	GCNNNNNNNGC	4 cut(s)	292, 1415, 1679, 2258
BstNI	CCWGG	4 cut(s)	1493, 2333, 2399, 2457
BstNSI	RCATGY	1 cut(s)	2288
BstSCI	CCNGG	6 cut(s)	9, 1491, 2331, 2397, 2455, 2471
BstSFI	CTRYAG	1 cut(s)	1407
BstSLI	GKGCMC	1 cut(s)	2223
BstV1I	GCAGC	8 cut(s)	16, 373, 820, 1393, 1421, 1574, 1951, 2053
BstV2I	GAAGAC	3 cut(s)	1626, 1812, 1959
BstX2I	RGATCY	4 cut(s)	631, 841, 2032, 2104
BstXI	CCANNNNNNTGG	2 cut(s)	852, 2090
BstYI	RGATCY	4 cut(s)	631, 841, 2032, 2104
BstZ17I	GTATAC	1 cut(s)	213
Bsu15I	ATCGAT	2 cut(s)	150, 850
BsuRI	GGCC	5 cut(s)	164, 523, 1332, 1940, 2231
BsuTUI	ATCGAT	2 cut(s)	150, 850
BtgI	CCRYGG	3 cut(s)	165, 281, 355
BtgZI	GCGATG	1 cut(s)	328
BtsCI	GGATG	5 cut(s)	448, 544, 892, 1325, 1478
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	6 cut(s)	783, 1107, 1613, 1919, 1963, 2418
BveI	ACCTGC	1 cut(s)	962
Cac8I	GCNNGC	3 cut(s)	1251, 2329, 2462
CaiI	CAGNNNCTG	1 cut(s)	2420
CfoI	GCGC	1 cut(s)	1305
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	521, 2230
ClaI	ATCGAT	2 cut(s)	150, 850
CseI	GACGC	2 cut(s)	1102, 1407
CsiI	ACCWGGT	1 cut(s)	1491
Csp6I	GTAC	5 cut(s)	1138, 1377, 1600, 1925, 2356
CviAII	CATG	7 cut(s)	23, 166, 356, 728, 2090, 2285, 2324
CviQI	GTAC	5 cut(s)	1138, 1377, 1600, 1925, 2356
DraI	TTTAAA	2 cut(s)	1149, 2434
DraIII	CACNNNGTG	2 cut(s)	13, 1370
DrdI	GACNNNNNNGTC	1 cut(s)	2372
DseDI	GACNNNNNNGTC	1 cut(s)	2372
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	1729
EarI	CTCTTC	1 cut(s)	1729
Ecl136II	GAGCTC	1 cut(s)	1281
Eco130I	CCWWGG	3 cut(s)	165, 355, 585
Eco24I	GRGCYC	1 cut(s)	1283
Eco32I	GATATC	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	1281
Eco57I	CTGAAG	4 cut(s)	636, 1589, 1806, 2397
EcoICRI	GAGCTC	1 cut(s)	1281
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRII	CCWGG	4 cut(s)	1491, 2331, 2397, 2455
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	3 cut(s)	165, 355, 585
EcoT22I	ATGCAT	1 cut(s)	1000
EcoT38I	GRGCYC	1 cut(s)	1283
ErhI	CCWWGG	3 cut(s)	165, 355, 585
Esp3I	CGTCTC	1 cut(s)	1736
FaeI	CATG	7 cut(s)	26, 169, 359, 731, 2093, 2288, 2327
FaqI	GGGAC	2 cut(s)	249, 2116
FatI	CATG	7 cut(s)	22, 165, 355, 727, 2089, 2284, 2323
FauI	CCCGC	1 cut(s)	1785
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	8 cut(s)	5, 362, 809, 1407, 1410, 1563, 1965, 2067
FokI	GGATG	5 cut(s)	455, 551, 879, 1312, 1485
FriOI	GRGCYC	1 cut(s)	1283
Fsp4HI	GCNGC	8 cut(s)	5, 362, 809, 1407, 1410, 1563, 1965, 2067
FspBI	CTAG	8 cut(s)	273, 870, 1059, 1175, 1907, 1949, 2187, 2447
GlaI	GCGC	1 cut(s)	1304
GluI	GCNGC	8 cut(s)	5, 362, 809, 1407, 1410, 1563, 1965, 2067
GsuI	CTGGAG	2 cut(s)	1696, 1787
HaeIII	GGCC	5 cut(s)	164, 523, 1332, 1940, 2231
HapII	CCGG	4 cut(s)	10, 365, 1329, 2473
HgaI	GACGC	2 cut(s)	1102, 1407
HhaI	GCGC	1 cut(s)	1305
Hin1I	GRCGYC	2 cut(s)	1094, 1418
Hin1II	CATG	7 cut(s)	26, 169, 359, 731, 2093, 2288, 2327
Hin6I	GCGC	1 cut(s)	1303
HinP1I	GCGC	1 cut(s)	1303
HincII	GTYRAC	2 cut(s)	1092, 1117
HindII	GTYRAC	2 cut(s)	1092, 1117
HpaII	CCGG	4 cut(s)	10, 365, 1329, 2473
HphI	GGTGA	2 cut(s)	518, 2414
Hpy166II	GTNNAC	7 cut(s)	213, 278, 328, 1092, 1117, 1364, 2221
Hpy188III	TCNNGA	8 cut(s)	37, 101, 392, 911, 1430, 1713, 1804, 1850
Hpy8I	GTNNAC	7 cut(s)	213, 278, 328, 1092, 1117, 1364, 2221
Hpy99I	CGWCG	1 cut(s)	2397
HpyAV	CCTTC	9 cut(s)	503, 621, 686, 822, 1613, 1856, 1879, 2041, 2156
HpyCH4III	ACNGT	5 cut(s)	459, 878, 985, 1818, 1958
HpyCH4IV	ACGT	3 cut(s)	105, 497, 2212
HpyF10VI	GCNNNNNNNGC	4 cut(s)	292, 1415, 1679, 2258
HpySE526I	ACGT	3 cut(s)	105, 497, 2212
Hsp92I	GRCGYC	2 cut(s)	1094, 1418
Hsp92II	CATG	4 cut(s)	26, 169, 359, 731
HspAI	GCGC	1 cut(s)	1303
KpnI	GGTACC	1 cut(s)	1603
Ksp22I	TGATCA	1 cut(s)	97
LmnI	GCTCC	5 cut(s)	375, 679, 910, 1545, 2050
Lsp1109I	GCAGC	8 cut(s)	16, 373, 820, 1393, 1421, 1574, 1951, 2053
LweI	GCATC	4 cut(s)	348, 901, 985, 2239
MabI	ACCWGGT	1 cut(s)	1491
MaeI	CTAG	8 cut(s)	273, 870, 1059, 1175, 1907, 1949, 2187, 2447
MaeII	ACGT	3 cut(s)	105, 497, 2212
MflI	RGATCY	4 cut(s)	631, 841, 2032, 2104
MhlI	GDGCHC	3 cut(s)	200, 1283, 2223
MlsI	TGGCCA	1 cut(s)	164
MluNI	TGGCCA	1 cut(s)	164
MlyI	GAGTC	5 cut(s)	1046, 1223, 1445, 1794, 1925
MmeI	TCCRAC	2 cut(s)	496, 1191
Mox20I	TGGCCA	1 cut(s)	164
Mph1103I	ATGCAT	1 cut(s)	1000
MroXI	GAANNNNTTC	3 cut(s)	822, 1321, 1590
MscI	TGGCCA	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	2088
Msp20I	TGGCCA	1 cut(s)	164
MspA1I	CMGCKG	2 cut(s)	1412, 1453
MspI	CCGG	4 cut(s)	10, 365, 1329, 2473
MspR9I	CCNGG	6 cut(s)	11, 1493, 2333, 2399, 2457, 2473
MvaI	CCWGG	4 cut(s)	1493, 2333, 2399, 2457
MwoI	GCNNNNNNNGC	4 cut(s)	292, 1415, 1679, 2258
NciI	CCSGG	2 cut(s)	11, 2473
NcoI	CCATGG	2 cut(s)	165, 355
NdeI	CATATG	1 cut(s)	424
NlaIII	CATG	7 cut(s)	26, 169, 359, 731, 2093, 2288, 2327
NlaIV	GGNNCC	6 cut(s)	843, 867, 1601, 2034, 2052, 2106
NmeAIII	GCCGAG	1 cut(s)	1046
NmuCI	GTSAC	6 cut(s)	392, 493, 855, 1917, 2416, 2467
NsiI	ATGCAT	1 cut(s)	1000
NspI	RCATGY	1 cut(s)	2288
NspV	TTCGAA	1 cut(s)	1695
PaqCI	CACCTGC	1 cut(s)	962
PcsI	WCGNNNNNNNCGW	1 cut(s)	2209
PdmI	GAANNNNTTC	3 cut(s)	822, 1321, 1590
PflMI	CCANNNNNTGG	3 cut(s)	171, 1936, 2042
PkrI	GCNGC	8 cut(s)	6, 363, 810, 1408, 1411, 1564, 1966, 2068
PleI	GAGTC	5 cut(s)	1045, 1223, 1444, 1794, 1924
PpsI	GAGTC	5 cut(s)	1045, 1223, 1444, 1794, 1924
PshBI	ATTAAT	1 cut(s)	1127
PsiI	TTATAA	2 cut(s)	833, 2382
Psp124BI	GAGCTC	1 cut(s)	1283
Psp6I	CCWGG	4 cut(s)	1491, 2331, 2397, 2455
PspGI	CCWGG	4 cut(s)	1491, 2331, 2397, 2455
PspN4I	GGNNCC	6 cut(s)	843, 867, 1601, 2034, 2052, 2106
PspPI	GGNCC	2 cut(s)	521, 2230
PstI	CTGCAG	1 cut(s)	1411
PstNI	CAGNNNCTG	1 cut(s)	2420
PsuI	RGATCY	4 cut(s)	631, 841, 2032, 2104
PvuII	CAGCTG	2 cut(s)	1412, 1453
RsaI	GTAC	5 cut(s)	1139, 1378, 1601, 1926, 2357
RsaNI	GTAC	5 cut(s)	1138, 1377, 1600, 1925, 2356
RseI	CAYNNNNRTG	1 cut(s)	2088
SacI	GAGCTC	1 cut(s)	1283
SatI	GCNGC	8 cut(s)	5, 362, 809, 1407, 1410, 1563, 1965, 2067
Sau96I	GGNCC	2 cut(s)	521, 2230
SchI	GAGTC	5 cut(s)	1046, 1223, 1445, 1794, 1925
ScrFI	CCNGG	6 cut(s)	11, 1493, 2333, 2399, 2457, 2473
SduI	GDGCHC	3 cut(s)	200, 1283, 2223
SexAI	ACCWGGT	1 cut(s)	1491
SfaNI	GCATC	4 cut(s)	348, 901, 985, 2239
SfcI	CTRYAG	1 cut(s)	1407
SfuI	TTCGAA	1 cut(s)	1695
SmiMI	CAYNNNNRTG	1 cut(s)	2088
SmlI	CTYRAG	3 cut(s)	683, 732, 1430
SmoI	CTYRAG	3 cut(s)	683, 732, 1430
SsiI	CCGC	2 cut(s)	536, 1792
SspI	AATATT	3 cut(s)	1384, 1976, 2265
SspMI	CTAG	8 cut(s)	273, 870, 1059, 1175, 1907, 1949, 2187, 2447
SstI	GAGCTC	1 cut(s)	1283
StyD4I	CCNGG	6 cut(s)	9, 1491, 2331, 2397, 2455, 2471
StyI	CCWWGG	3 cut(s)	165, 355, 585
TaaI	ACNGT	5 cut(s)	459, 878, 985, 1818, 1958
TaiI	ACGT	3 cut(s)	108, 500, 2215
TaqI	TCGA	5 cut(s)	150, 185, 850, 1695, 1851
TatI	WGTACW	1 cut(s)	1137
TscAI	CASTG	6 cut(s)	783, 1107, 1613, 1926, 1963, 2425
TseFI	GTSAC	6 cut(s)	392, 493, 855, 1917, 2416, 2467
TseI	GCWGC	8 cut(s)	4, 361, 808, 1406, 1409, 1562, 1964, 2066
Tsp45I	GTSAC	6 cut(s)	392, 493, 855, 1917, 2416, 2467
TspDTI	ATGAA	6 cut(s)	411, 716, 1176, 1314, 2183, 2316
TspRI	CASTG	6 cut(s)	783, 1107, 1613, 1926, 1963, 2425
Van91I	CCANNNNNTGG	3 cut(s)	171, 1936, 2042
VneI	GTGCAC	1 cut(s)	2219
VspI	ATTAAT	1 cut(s)	1127
XapI	RAATTY	4 cut(s)	138, 1189, 1318, 1932
XceI	RCATGY	1 cut(s)	2288
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XmiI	GTMKAC	1 cut(s)	212
XmnI	GAANNNNTTC	3 cut(s)	822, 1321, 1590
XspI	CTAG	8 cut(s)	273, 870, 1059, 1175, 1907, 1949, 2187, 2447
Zsp2I	ATGCAT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.