Rorug05G0048300

Transforming growth factor-beta receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000360
Physical Location & Seq
Reverse (-)
4207217 .. 4210450
3234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0048300.1

Sequence Viewer

Length: 1182 bp
ATGGAAGAGTTGAGGCAAGCTCTAAAACAATCTGAGAACTCAATAGGGTCTTTGGAATCAAAACTTGAATCTCTTAAAGCTGAGAAAGGGCAAGGTGGTTGCATCAACTATGGCTCTGGCCAAACAGAATCACCTGTTCCTTCTCAAAAGTCGGAGGGACATTACCCTTGTGGTAAAGAGATTTGTAAGGATGAGCCATCCGCTGGCAGTTTCACATGTGAAGCCTTGACAAGCTGCTCACTGGAATGCCAGATACCAGCGACAGTGTCAGCTGAAGACACTGAGACTAAACGAGAAGTTTCACAATCATTCAAGCACGAAAAAATCTCAATTGGGGCTTTCTACGGTGGACTTGGAGGGACTCTAAGAAAGAGAAGGGGCAAGAGGAAGAGGAAGGATTGTAGTAGGGATGTTAAGGAGGCGAGTGTTGGGGATAGTGGATTTTTGGATTCAGCTGATGCTATAACTGCCTTGCGGTGTATAGAACATTCAACCAGTGAGTGTCGTGAGGATTTGGGATCTTCTGGTGCAGGTGATTGGAAAAGAGGTTTGACCAAGGATGGAACTAATAAGTTGTTGGATGTTTTCAATAAATTTTTGGAACATAAAAGTGCTTCTGTCTTTCGTCATCGACTTGATAGCCAGAAGAGAAGAAGGTATAAGAAAATGATCCGTAGGCACATGGATTTTGACACAATAGGATCACGAATTGCAAGCCATTCTGTCATGTCAGTTAAGGAACTGTTTCGAGATCTGTTGCTGCTCGCCAACAATGCCCTAGTGTTTTACTCCAAGAGCACACGTGAATACAAATCTGCTTTGCTTCTTAGAGACCTCACTACCAAAACATTGCAGCAGCATCTGAAGGATTCTAGCAGCAAGGCTACCTCTGCAAACCTCTCCTCCAATACACTAGTGTGTAATCCTCCAGTTAAACCTAGAAGTGCTCGCCCTGGTAACCAAAAGCTGTCGAGAAAAGCTACCAATGCCGGAAAGGCTGCTGCTAAGACTTCAAACAAAAGTAAGAAAACCGGTAATGCTAATGCAGATTCTTCTCCTTCAGTCCAATCTTTTGCTGTGACAAAAAGGACATCTGGTCACCAAAGGAAAGTGGGACGTAAAACTGTTGGTCAACAAAATGTAGTTCCTGTGAAGGGAAGGAAAAGAGGTCGTACAAAGTAG

Protein Analysis

393

Amino Acids

43.08

Weight (kDa)

9.94

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 194 - 273 3.4e-11 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 521
Acc36I ACCTGC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 203
AciI CCGC 2 cut(s) 201, 475
AclWI GGATC 3 cut(s) 526, 664, 709
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 1 cut(s) 593
AcuI CTGAAG 3 cut(s) 294, 884, 1044
AcvI CACGTG 1 cut(s) 803
AfaI GTAC 1 cut(s) 1174
AfiI CCNNNNNNNGG 2 cut(s) 203, 1154
AflIII ACRYGT 2 cut(s) 215, 800
AgeI ACCGGT 1 cut(s) 1031
AgsI TTSAA 5 cut(s) 68, 313, 492, 589, 1014
AhdI GACNNNNNGTC 1 cut(s) 1095
AhlI ACTAGT 1 cut(s) 913
AjnI CCWGG 1 cut(s) 952
AleI CACNNNNGTG 1 cut(s) 916
AluBI AGCT 7 cut(s) 20, 80, 234, 272, 455, 967, 980
AluI AGCT 7 cut(s) 20, 80, 234, 272, 455, 967, 980
Alw21I GWGCWC 2 cut(s) 800, 949
Alw26I GTCTC 2 cut(s) 278, 825
AlwI GGATC 3 cut(s) 526, 664, 709
AlwNI CAGNNNCTG 1 cut(s) 862
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 7 cut(s) 234, 760, 853, 856, 876, 998, 1001
ApoI RAATTY 1 cut(s) 593
AsiGI ACCGGT 1 cut(s) 1031
Asp700I GAANNNNTTC 1 cut(s) 744
AsuHPI GGTGA 3 cut(s) 123, 545, 1091
BalI TGGCCA 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 803
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 2 cut(s) 800, 949
BbvI GCAGC 7 cut(s) 221, 747, 865, 868, 888, 985, 988
BccI CCATC 2 cut(s) 205, 554
BciT130I CCWGG 1 cut(s) 954
BcoDI GTCTC 2 cut(s) 278, 825
BcuI ACTAGT 1 cut(s) 913
BfaI CTAG 4 cut(s) 779, 873, 914, 939
BfuAI ACCTGC 1 cut(s) 521
BglI GCCNNNNNGGC 1 cut(s) 995
BglII AGATCT 1 cut(s) 751
BisI GCNGC 7 cut(s) 235, 761, 854, 857, 877, 999, 1002
BlsI GCNGC 7 cut(s) 236, 762, 855, 858, 878, 1000, 1003
Bme1390I CCNGG 1 cut(s) 954
BmeRI GACNNNNNGTC 1 cut(s) 1095
BmrFI CCNGG 1 cut(s) 954
BmsI GCATC 3 cut(s) 111, 448, 868
BpiI GAAGAC 1 cut(s) 282
BplI GAGNNNNNCTC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 912
BsaAI YACGTR 1 cut(s) 803
BsaI GGTCTC 1 cut(s) 825
BsaJI CCNNGG 2 cut(s) 555, 952
BsaWI WCCGGW 1 cut(s) 1031
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 1154
Bse118I RCCGGY 1 cut(s) 1031
Bse1I ACTGG 3 cut(s) 246, 495, 929
Bse3DI GCAATG 1 cut(s) 848
BseBI CCWGG 1 cut(s) 954
BseDI CCNNGG 2 cut(s) 555, 952
BseGI GGATG 5 cut(s) 196, 197, 415, 565, 586
BseLI CCNNNNNNNGG 2 cut(s) 203, 1154
BseMI GCAATG 1 cut(s) 848
BseMII CTCAG 3 cut(s) 24, 72, 273
BseNI ACTGG 3 cut(s) 246, 495, 929
BseRI GAGGAG 1 cut(s) 892
BseXI GCAGC 7 cut(s) 221, 747, 865, 868, 888, 985, 988
BsgI GTGCAG 1 cut(s) 549
BshFI GGCC 1 cut(s) 120
BshTI ACCGGT 1 cut(s) 1031
BsiHKAI GWGCWC 2 cut(s) 800, 949
BsiSI CCGG 2 cut(s) 990, 1032
BslFI GGGAC 3 cut(s) 171, 373, 1128
BslI CCNNNNNNNGG 2 cut(s) 203, 1154
BsmAI GTCTC 2 cut(s) 278, 825
BsmFI GGGAC 3 cut(s) 171, 373, 1128
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 120
Bso31I GGTCTC 1 cut(s) 825
Bsp1286I GDGCHC 2 cut(s) 800, 949
Bsp143I GATC 4 cut(s) 518, 669, 701, 751
BspACI CCGC 2 cut(s) 201, 475
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 3 cut(s) 25, 73, 274
BspMI ACCTGC 1 cut(s) 521
BspPI GGATC 3 cut(s) 526, 664, 709
BspTNI GGTCTC 1 cut(s) 825
BsrDI GCAATG 1 cut(s) 848
BsrFI RCCGGY 1 cut(s) 1031
BsrI ACTGG 3 cut(s) 246, 495, 929
BssAI RCCGGY 1 cut(s) 1031
BssECI CCNNGG 2 cut(s) 555, 952
BssMI GATC 4 cut(s) 518, 669, 701, 751
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 1 cut(s) 954
Bst4CI ACNGT 4 cut(s) 265, 347, 744, 1126
Bst6I CTCTTC 2 cut(s) 383, 641
BstBAI YACGTR 1 cut(s) 803
BstC8I GCNNGC 5 cut(s) 18, 205, 715, 765, 949
BstDEI CTNAG 6 cut(s) 33, 81, 282, 365, 827, 1005
BstEII GGTNACC 2 cut(s) 956, 1097
BstF5I GGATG 5 cut(s) 196, 197, 415, 565, 586
BstKTI GATC 4 cut(s) 521, 672, 704, 754
BstMAI GTCTC 2 cut(s) 278, 825
BstMBI GATC 4 cut(s) 518, 669, 701, 751
BstMWI GCNNNNNNNGC 5 cut(s) 467, 773, 890, 986, 995
BstNI CCWGG 1 cut(s) 954
BstNSI RCATGY 1 cut(s) 219
BstPI GGTNACC 2 cut(s) 956, 1097
BstSCI CCNGG 1 cut(s) 952
BstV1I GCAGC 7 cut(s) 221, 747, 865, 868, 888, 985, 988
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 2 cut(s) 518, 751
BstYI RGATCY 2 cut(s) 518, 751
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 5 cut(s) 196, 197, 415, 565, 586
BtsIMutI CAGTG 4 cut(s) 239, 270, 279, 502
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 5 cut(s) 18, 205, 715, 765, 949
CaiI CAGNNNCTG 1 cut(s) 862
Cfr10I RCCGGY 1 cut(s) 1031
Csp6I GTAC 1 cut(s) 1173
CspAI ACCGGT 1 cut(s) 1031
CviAII CATG 3 cut(s) 216, 682, 727
CviQI GTAC 1 cut(s) 1173
DdeI CTNAG 6 cut(s) 33, 81, 282, 365, 827, 1005
DpnI GATC 4 cut(s) 520, 671, 703, 753
DpnII GATC 4 cut(s) 518, 669, 701, 751
DriI GACNNNNNGTC 1 cut(s) 1095
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 383, 641
Eam1105I GACNNNNNGTC 1 cut(s) 1095
EarI CTCTTC 2 cut(s) 383, 641
Eco130I CCWWGG 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 825
Eco57I CTGAAG 3 cut(s) 294, 884, 1044
Eco72I CACGTG 1 cut(s) 803
Eco91I GGTNACC 2 cut(s) 956, 1097
EcoO65I GGTNACC 2 cut(s) 956, 1097
EcoRII CCWGG 1 cut(s) 952
EcoT14I CCWWGG 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 3 cut(s) 219, 685, 730
FaiI YATR 8 cut(s) 111, 217, 464, 482, 606, 660, 683, 728
FaqI GGGAC 3 cut(s) 171, 373, 1128
FatI CATG 3 cut(s) 215, 681, 726
Fnu4HI GCNGC 7 cut(s) 235, 761, 854, 857, 877, 999, 1002
FokI GGATG 5 cut(s) 184, 203, 422, 572, 593
Fsp4HI GCNGC 7 cut(s) 235, 761, 854, 857, 877, 999, 1002
FspBI CTAG 4 cut(s) 779, 873, 914, 939
GluI GCNGC 7 cut(s) 235, 761, 854, 857, 877, 999, 1002
GsuI CTGGAG 1 cut(s) 912
HaeIII GGCC 1 cut(s) 120
HapII CCGG 2 cut(s) 990, 1032
Hin1II CATG 3 cut(s) 219, 685, 730
HincII GTYRAC 1 cut(s) 1133
HindII GTYRAC 1 cut(s) 1133
HinfI GANTC 7 cut(s) 56, 68, 128, 361, 449, 869, 1049
HpaII CCGG 2 cut(s) 990, 1032
HphI GGTGA 3 cut(s) 123, 545, 1091
Hpy166II GTNNAC 2 cut(s) 350, 1133
Hpy188I TCNGA 3 cut(s) 34, 154, 864
Hpy188III TCNNGA 4 cut(s) 506, 705, 749, 972
Hpy8I GTNNAC 2 cut(s) 350, 1133
HpyAV CCTTC 8 cut(s) 150, 369, 388, 648, 859, 1068, 1147, 1152
HpyCH4III ACNGT 4 cut(s) 265, 347, 744, 1126
HpyCH4IV ACGT 2 cut(s) 802, 1117
HpyCH4V TGCA 6 cut(s) 102, 530, 713, 853, 893, 1046
HpyF10VI GCNNNNNNNGC 5 cut(s) 467, 773, 890, 986, 995
HpyF3I CTNAG 6 cut(s) 33, 81, 282, 365, 827, 1005
HpySE526I ACGT 2 cut(s) 802, 1117
Hsp92II CATG 3 cut(s) 219, 685, 730
Kzo9I GATC 4 cut(s) 518, 669, 701, 751
Lsp1109I GCAGC 7 cut(s) 221, 747, 865, 868, 888, 985, 988
LweI GCATC 3 cut(s) 111, 448, 868
MaeI CTAG 4 cut(s) 779, 873, 914, 939
MaeII ACGT 2 cut(s) 802, 1117
MaeIII GTNAC 3 cut(s) 956, 1078, 1097
MalI GATC 4 cut(s) 520, 671, 703, 753
MboI GATC 4 cut(s) 518, 669, 701, 751
MboII GAAGA 7 cut(s) 17, 287, 400, 513, 658, 663, 1044
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 2 cut(s) 518, 751
MhlI GDGCHC 2 cut(s) 800, 949
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 3 cut(s) 330, 593, 708
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 2 cut(s) 132, 558
Mox20I TGGCCA 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 744
MscI TGGCCA 1 cut(s) 120
MseI TTAA 4 cut(s) 75, 414, 735, 933
MslI CAYNNNNRTG 3 cut(s) 244, 609, 916
Msp20I TGGCCA 1 cut(s) 120
MspA1I CMGCKG 3 cut(s) 203, 272, 455
MspI CCGG 2 cut(s) 990, 1032
MspR9I CCNGG 1 cut(s) 954
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 954
MwoI GCNNNNNNNGC 5 cut(s) 467, 773, 890, 986, 995
NdeII GATC 4 cut(s) 518, 669, 701, 751
NlaIII CATG 3 cut(s) 219, 685, 730
NmuCI GTSAC 2 cut(s) 1078, 1097
NspI RCATGY 1 cut(s) 219
OliI CACNNNNGTG 1 cut(s) 916
PaqCI CACCTGC 1 cut(s) 521
PciI ACATGT 1 cut(s) 215
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 6 cut(s) 56, 68, 128, 449, 869, 1049
PflFI GACNNNGTC 1 cut(s) 265
PflMI CCANNNNNTGG 1 cut(s) 203
PinAI ACCGGT 1 cut(s) 1031
PkrI GCNGC 7 cut(s) 236, 762, 855, 858, 878, 1000, 1003
PleI GAGTC 1 cut(s) 355
PmaCI CACGTG 1 cut(s) 803
PmlI CACGTG 1 cut(s) 803
PpsI GAGTC 1 cut(s) 355
Ppu21I YACGTR 1 cut(s) 803
PscI ACATGT 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 952
PspCI CACGTG 1 cut(s) 803
PspEI GGTNACC 2 cut(s) 956, 1097
PspGI CCWGG 1 cut(s) 952
PstNI CAGNNNCTG 1 cut(s) 862
PsuI RGATCY 2 cut(s) 518, 751
PsyI GACNNNGTC 1 cut(s) 265
PvuII CAGCTG 2 cut(s) 272, 455
RsaI GTAC 1 cut(s) 1174
RsaNI GTAC 1 cut(s) 1173
RseI CAYNNNNRTG 3 cut(s) 244, 609, 916
SaqAI TTAA 4 cut(s) 75, 414, 735, 933
SatI GCNGC 7 cut(s) 235, 761, 854, 857, 877, 999, 1002
Sau3AI GATC 4 cut(s) 518, 669, 701, 751
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 954
SduI GDGCHC 2 cut(s) 800, 949
SfaNI GCATC 3 cut(s) 111, 448, 868
SmiMI CAYNNNNRTG 3 cut(s) 244, 609, 916
SpeI ACTAGT 1 cut(s) 913
Sse9I AATT 3 cut(s) 330, 593, 708
SsiI CCGC 2 cut(s) 201, 475
SspMI CTAG 4 cut(s) 779, 873, 914, 939
StyD4I CCNGG 1 cut(s) 952
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 4 cut(s) 265, 347, 744, 1126
TaiI ACGT 2 cut(s) 805, 1120
TaqI TCGA 3 cut(s) 631, 748, 971
TasI AATT 3 cut(s) 330, 593, 708
TfiI GAWTC 6 cut(s) 56, 68, 128, 449, 869, 1049
Tru1I TTAA 4 cut(s) 75, 414, 735, 933
Tru9I TTAA 4 cut(s) 75, 414, 735, 933
TscAI CASTG 4 cut(s) 246, 270, 286, 502
TseFI GTSAC 2 cut(s) 1078, 1097
TseI GCWGC 7 cut(s) 234, 760, 853, 856, 876, 998, 1001
Tsp45I GTSAC 2 cut(s) 1078, 1097
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 4 cut(s) 246, 270, 286, 502
Tth111I GACNNNGTC 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 203
XapI RAATTY 1 cut(s) 593
XceI RCATGY 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 4 cut(s) 779, 873, 914, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.