Rh5BG138500

VWA domain containing CoxE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000360
Physical Location & Seq
Forward (+)
14264423 .. 14266102
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG138500.1

Sequence Viewer

Length: 396 bp
ATGGCATCTATGGAATTGTATGCACAAACCGGGCGTGCTTATGCTCTTGCAGGAATGAGTTCCCACATGTCGCAAAGGCCCACAACTAGAGGTAACAGAAGAGCCTCCTGTCTCTCTGCTGATTTAGTTGCTTCCATGAGGGGTGTCCATTCCTCTGTTGGTCATGATGCCTCCGGGGCCAGTGCTTCATCACAGTTGACGCTCCAGGTGATTCTTCTGCCCCAGTTGGTGCTTTTGAAACACCTGCTATGGTCAGAATGGAAAATTGTGCTTGGTTCTCAAGATCCAAAACAAAAGGAATGCAATTCGGATATAGTAAAGAAAGAACCCCAAATAAATAATGAAATCCCCAAGGTACTATACTACGGTACTACCTTCATATCATTCCATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

131

Amino Acids

14.4

Weight (kDa)

9.0

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vwaint PF14624 1 - 33 1.3e-06 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 252
AclWI GGATC 1 cut(s) 278
AfaI GTAC 2 cut(s) 357, 370
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 278
AoxI GGCC 2 cut(s) 77, 177
Asp700I GAANNNNTTC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 78, 177
AsuC2I CCSGG 2 cut(s) 31, 175
AsuHPI GGTGA 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 2 cut(s) 31, 175
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 87
BfuAI ACCTGC 1 cut(s) 252
BglI GCCNNNNNGGC 1 cut(s) 176
Bme1390I CCNGG 3 cut(s) 31, 175, 206
BmgT120I GGNCC 2 cut(s) 78, 177
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 3 cut(s) 31, 175, 206
BmrI ACTGGG 1 cut(s) 217
BmsI GCATC 2 cut(s) 14, 157
BmuI ACTGGG 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 264
BpuMI CCSGG 2 cut(s) 31, 175
BsaJI CCNNGG 2 cut(s) 174, 351
Bse1I ACTGG 2 cut(s) 180, 223
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 174, 351
BseNI ACTGG 2 cut(s) 180, 223
BshFI GGCC 2 cut(s) 79, 179
BsiSI CCGG 2 cut(s) 30, 174
BsmAI GTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 2 cut(s) 79, 179
Bsp143I GATC 1 cut(s) 283
BspANI GGCC 2 cut(s) 79, 179
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 178
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 1 cut(s) 278
BspQI GCTCTTC 1 cut(s) 94
BsrI ACTGG 2 cut(s) 180, 223
BssECI CCNNGG 2 cut(s) 174, 351
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 195, 368
Bst6I CTCTTC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 3 cut(s) 29, 173, 204
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 2 cut(s) 79, 179
BtsIMutI CAGTG 1 cut(s) 187
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 36
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 78, 177
CseI GACGC 1 cut(s) 208
Csp6I GTAC 2 cut(s) 356, 369
CviAII CATG 4 cut(s) 67, 136, 164, 389
CviJI RGCY 3 cut(s) 79, 104, 179
CviKI_1 RGCY 3 cut(s) 79, 104, 179
CviQI GTAC 2 cut(s) 356, 369
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 4 cut(s) 70, 139, 167, 392
FatI CATG 4 cut(s) 66, 135, 163, 388
FspBI CTAG 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 2 cut(s) 79, 179
HapII CCGG 2 cut(s) 30, 174
HgaI GACGC 1 cut(s) 208
Hin1II CATG 4 cut(s) 70, 139, 167, 392
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 1 cut(s) 211
HpaII CCGG 2 cut(s) 30, 174
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 2 cut(s) 256, 310
Hpy188III TCNNGA 2 cut(s) 164, 281
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 2 cut(s) 195, 368
HpyCH4V TGCA 3 cut(s) 23, 50, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
Hsp92II CATG 4 cut(s) 70, 139, 167, 392
Kzo9I GATC 1 cut(s) 283
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 9 cut(s) 36, 43, 121, 187, 191, 193, 218, 236, 257
LweI GCATC 2 cut(s) 14, 157
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 2 cut(s) 111, 206
MflI RGATCY 1 cut(s) 283
MluCI AATT 3 cut(s) 14, 264, 304
MnlI CCTC 5 cut(s) 83, 115, 132, 163, 181
MroXI GAANNNNTTC 1 cut(s) 58
MspI CCGG 2 cut(s) 30, 174
MspR9I CCNGG 3 cut(s) 31, 175, 206
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 2 cut(s) 31, 175
NdeII GATC 1 cut(s) 283
NlaIII CATG 4 cut(s) 70, 139, 167, 392
NlaIV GGNNCC 1 cut(s) 178
NspI RCATGY 1 cut(s) 70
PagI TCATGA 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 252
PciI ACATGT 1 cut(s) 66
PciSI GCTCTTC 1 cut(s) 94
PctI GAATGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 211
PscI ACATGT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 2 cut(s) 78, 177
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 2 cut(s) 357, 370
RsaNI GTAC 2 cut(s) 356, 369
SapI GCTCTTC 1 cut(s) 94
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 2 cut(s) 78, 177
ScrFI CCNGG 3 cut(s) 31, 175, 206
SetI ASST 5 cut(s) 94, 210, 246, 357, 377
SfaNI GCATC 2 cut(s) 14, 157
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 3 cut(s) 14, 264, 304
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 3 cut(s) 29, 173, 204
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 195, 368
TasI AATT 3 cut(s) 14, 264, 304
TfiI GAWTC 1 cut(s) 211
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 3 cut(s) 177, 357, 367
TspRI CASTG 1 cut(s) 187
XceI RCATGY 1 cut(s) 70
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.