Rmu_sc0002142.1_g000003

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002142.1
OG0000360
Physical Location & Seq
Reverse (-)
12823 .. 13398
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002142.1_g000003.1.cds

Sequence Viewer

Length: 576 bp
atgcaagtgcaatgtgagaaagtagagatactgagacctgaggtttgttccctagctgaaaaggcagtgtctttggaggttgatcggcagcggaacagagttttggtggctgaatctattgcagaggcacaaaggttggctgagatgggaaatctgcagggcgcacaggctcttttggctcaacgaaaggcaattatattagcatcaccagcggcccaagccggagattttcacagtaatttgtttgaaactgagctaagagaaatcactgatagaatggcatctatggaattgtatacacaaaccgggcgtgcttatgctcttgcaggaatgagttcccgtatgtcgcaaaggcccataactagaggtaacagaagagcctcttgtctctctgctgatttagttgcttccatgacgggtgtccattcctatgttggtcaagatgcctccggggcaaatgcttcatcagttgactccccaggtgattcttcttccccagttggtgcttttgaaacacctgctatggtcagaatggaactaaaatcacagaagaggaatcaatctggtcaattctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

191

Amino Acids

20.61

Weight (kDa)

6.75

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
Acc36I ACCTGC 1 cut(s) 526
AccI GTMKAC 1 cut(s) 296
AciI CCGC 2 cut(s) 91, 212
AgsI TTSAA 2 cut(s) 248, 512
AjnI CCWGG 1 cut(s) 478
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 2 cut(s) 56, 256
AluI AGCT 2 cut(s) 56, 256
Alw26I GTCTC 2 cut(s) 28, 392
AoxI GGCC 2 cut(s) 213, 353
ApeKI GCWGC 1 cut(s) 88
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
Asp700I GAANNNNTTC 1 cut(s) 334
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 214, 354
AsuC2I CCSGG 2 cut(s) 307, 451
AsuHPI GGTGA 2 cut(s) 198, 494
AxyI CCTNAGG 1 cut(s) 39
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 480
BcnI CCSGG 2 cut(s) 307, 451
BcoDI GTCTC 2 cut(s) 28, 392
BfaI CTAG 2 cut(s) 53, 363
BfmI CTRYAG 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 526
BglI GCCNNNNNGGC 1 cut(s) 452
BisI GCNGC 2 cut(s) 89, 213
BlsI GCNGC 2 cut(s) 90, 214
Bme1390I CCNGG 3 cut(s) 307, 451, 480
BmgT120I GGNCC 2 cut(s) 214, 354
BmrFI CCNGG 3 cut(s) 307, 451, 480
BmrI ACTGGG 1 cut(s) 491
BmsI GCATC 3 cut(s) 212, 290, 433
BmuI ACTGGG 1 cut(s) 491
BoxI GACNNNNGTC 1 cut(s) 419
BpuMI CCSGG 2 cut(s) 307, 451
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 450, 478
Bse1I ACTGG 1 cut(s) 497
Bse21I CCTNAGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 450, 478
BseMI GCAATG 1 cut(s) 17
BseMII CTCAG 4 cut(s) 23, 30, 132, 243
BseNI ACTGG 1 cut(s) 497
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 2 cut(s) 215, 355
BsiSI CCGG 3 cut(s) 222, 306, 450
BsmAI GTCTC 2 cut(s) 28, 392
BsnI GGCC 2 cut(s) 215, 355
Bso31I GGTCTC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 2 cut(s) 91, 212
BspANI GGCC 2 cut(s) 215, 355
BspCNI CTCAG 4 cut(s) 24, 31, 133, 244
BspMAI CTGCAG 1 cut(s) 159
BspMI ACCTGC 1 cut(s) 526
BspQI GCTCTTC 1 cut(s) 370
BspTNI GGTCTC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 17
BsrI ACTGG 1 cut(s) 497
BssECI CCNNGG 2 cut(s) 450, 478
BssMI GATC 1 cut(s) 82
BssNAI GTATAC 1 cut(s) 297
Bst1107I GTATAC 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 2 cut(s) 370, 545
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 5 cut(s) 32, 39, 141, 252, 257
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 2 cut(s) 28, 392
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 5 cut(s) 62, 176, 209, 218, 452
BstNI CCWGG 1 cut(s) 480
BstPAI GACNNNNGTC 1 cut(s) 419
BstSCI CCNGG 3 cut(s) 305, 449, 478
BstSFI CTRYAG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 100
BstZ17I GTATAC 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 39
BsuRI GGCC 2 cut(s) 215, 355
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 267
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 312
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 214, 354
CviAII CATG 1 cut(s) 412
DdeI CTNAG 5 cut(s) 32, 39, 141, 252, 257
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 370, 545
EarI CTCTTC 2 cut(s) 370, 545
Eco31I GGTCTC 1 cut(s) 28
Eco81I CCTNAGG 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 478
FaeI CATG 1 cut(s) 415
FaiI YATR 9 cut(s) 197, 287, 297, 318, 344, 359, 413, 432, 524
FalI AAGNNNNNCTT 2 cut(s) 367, 399
FatI CATG 1 cut(s) 411
FblI GTMKAC 1 cut(s) 296
Fnu4HI GCNGC 2 cut(s) 89, 213
Fsp4HI GCNGC 2 cut(s) 89, 213
FspBI CTAG 2 cut(s) 53, 363
GlaI GCGC 1 cut(s) 163
GluI GCNGC 2 cut(s) 89, 213
HaeIII GGCC 2 cut(s) 215, 355
HapII CCGG 3 cut(s) 222, 306, 450
HhaI GCGC 1 cut(s) 164
Hin1II CATG 1 cut(s) 415
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 4 cut(s) 113, 473, 485, 556
HpaII CCGG 3 cut(s) 222, 306, 450
HphI GGTGA 2 cut(s) 198, 494
Hpy166II GTNNAC 2 cut(s) 297, 472
Hpy188I TCNGA 1 cut(s) 530
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 2 cut(s) 297, 472
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 5 cut(s) 4, 10, 122, 157, 326
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 176, 209, 218, 452
HpyF3I CTNAG 5 cut(s) 32, 39, 141, 252, 257
Hsp92II CATG 1 cut(s) 415
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 1 cut(s) 82
LguI GCTCTTC 1 cut(s) 370
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 3 cut(s) 212, 290, 433
MaeI CTAG 2 cut(s) 53, 363
MaeIII GTNAC 1 cut(s) 368
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 4 cut(s) 387, 480, 483, 562
MluCI AATT 4 cut(s) 192, 238, 290, 569
MlyI GAGTC 1 cut(s) 467
MnlI CCTC 7 cut(s) 34, 70, 118, 359, 391, 457, 546
MroXI GAANNNNTTC 1 cut(s) 334
MslI CAYNNNNRTG 1 cut(s) 429
MspA1I CMGCKG 2 cut(s) 91, 212
MspI CCGG 3 cut(s) 222, 306, 450
MspR9I CCNGG 3 cut(s) 307, 451, 480
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 5 cut(s) 62, 176, 209, 218, 452
NciI CCSGG 2 cut(s) 307, 451
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 415
PaqCI CACCTGC 1 cut(s) 526
PciSI GCTCTTC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 3 cut(s) 113, 485, 556
PkrI GCNGC 2 cut(s) 90, 214
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
PshAI GACNNNNGTC 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspPI GGNCC 2 cut(s) 214, 354
PstI CTGCAG 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 370
SatI GCNGC 2 cut(s) 89, 213
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 2 cut(s) 214, 354
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 3 cut(s) 307, 451, 480
SetI ASST 9 cut(s) 40, 45, 58, 81, 137, 258, 370, 484, 520
SfaNI GCATC 3 cut(s) 212, 290, 433
SfcI CTRYAG 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 429
Sse9I AATT 4 cut(s) 192, 238, 290, 569
SsiI CCGC 2 cut(s) 91, 212
SspMI CTAG 2 cut(s) 53, 363
StyD4I CCNGG 3 cut(s) 305, 449, 478
TaaI ACNGT 1 cut(s) 236
TasI AATT 4 cut(s) 192, 238, 290, 569
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 3 cut(s) 113, 485, 556
TscAI CASTG 2 cut(s) 72, 274
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 453
TspRI CASTG 2 cut(s) 72, 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 334
XspI CTAG 2 cut(s) 53, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.