RLG00000032418

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000360
Physical Location & Seq
Forward (+)
15010603 .. 15011839
1237 bp
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UTR
Exon/CDS
Intron
RLM00000032418

Sequence Viewer

Length: 525 bp
ATGTCGCGACAGTATAGTTTACGGTCTCAGGGTCCATCTTCTCAAAACATTTGCTCCATCTGCTGGAGTAACTTGACAACAGGGCAAGGCCGAGCCATCTTCACTGCTGAGTGCTCACACTCTTTCCACTACCCTTGCATTGCCAACAATGTCCAGCATGGAAATCTTTGCTGCCCTGCCTGCAGAGCAAAATGGAATAAAAATAATTTACCTTTCCAAGTTCCCCCTCTTCAACAAAATAAAAAGAGTAAACATGGCTTCGCCGATGATGAACCTCTCTCGTCCGCCACACTCCTCCAAACTTCTGGCCCCCAGAATGTAACAGTCAAGACTCATACAGAGACCTCTGCTATCTCTGCTGCCGAATCACGCCCCCATTATCCTGTTCTAGTTAGCATTTGTGCATCACCCCTTCAAGATCCCGATGGTGAAGGCCGTACACCCATTGACCTTGTTACAATTCTCGACGTAAGCGGTAGCATGCTTGGCCAAAAGCTTGAACTTGTCAAGCAAGCTGTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

175

Amino Acids

18.88

Weight (kDa)

8.44

Isoelectric Point (pI)

62.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 17 - 62 6.6e-07 Ring finger domain
zf-RING_11 PF17123 18 - 47 9.3e-10 RING-like zinc finger
zf-C3HC4 PF00097 18 - 61 1.4e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 63
AccII CGCG 1 cut(s) 7
AciI CCGC 2 cut(s) 285, 474
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 1 cut(s) 487
AfaI GTAC 1 cut(s) 439
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 3 cut(s) 233, 416, 500
AluBI AGCT 2 cut(s) 496, 515
AluI AGCT 2 cut(s) 496, 515
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 2 cut(s) 30, 335
AlwI GGATC 1 cut(s) 413
AoxI GGCC 4 cut(s) 88, 307, 433, 487
ApeKI GCWGC 2 cut(s) 171, 359
AspS9I GGNCC 2 cut(s) 32, 308
AsuHPI GGTGA 2 cut(s) 399, 440
AvaII GGWCC 1 cut(s) 32
BalI TGGCCA 1 cut(s) 489
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 158, 346
BccI CCATC 4 cut(s) 43, 65, 104, 419
BceAI ACGGC 1 cut(s) 420
BcoDI GTCTC 2 cut(s) 30, 335
BfaI CTAG 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 181
BisI GCNGC 2 cut(s) 172, 360
BlsI GCNGC 2 cut(s) 173, 361
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 32, 308
BmiI GGNNCC 2 cut(s) 33, 310
BmsI GCATC 1 cut(s) 413
BpmI CTGGAG 1 cut(s) 85
BsaI GGTCTC 2 cut(s) 30, 335
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 41, 99
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 158, 346
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 4 cut(s) 90, 309, 435, 489
BsiHKAI GWGCWC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 2 cut(s) 30, 335
BsnI GGCC 4 cut(s) 90, 309, 435, 489
Bso31I GGTCTC 2 cut(s) 30, 335
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 418
Bsp68I TCGCGA 1 cut(s) 7
BspACI CCGC 2 cut(s) 285, 474
BspANI GGCC 4 cut(s) 90, 309, 435, 489
BspCNI CTCAG 2 cut(s) 40, 100
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 33, 310
BspMAI CTGCAG 1 cut(s) 185
BspPI GGATC 1 cut(s) 413
BspTNI GGTCTC 2 cut(s) 30, 335
BsrDI GCAATG 1 cut(s) 138
BssMI GATC 1 cut(s) 418
Bst4CI ACNGT 3 cut(s) 12, 24, 325
Bst6I CTCTTC 1 cut(s) 234
BstC8I GCNNGC 3 cut(s) 181, 482, 513
BstDEI CTNAG 2 cut(s) 27, 108
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 2 cut(s) 30, 335
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 5 cut(s) 60, 180, 185, 356, 486
BstNSI RCATGY 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 181
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 158, 346
BstX2I RGATCY 1 cut(s) 418
BstXI CCANNNNNNTGG 1 cut(s) 305
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 4 cut(s) 90, 309, 435, 489
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
BtuMI TCGCGA 1 cut(s) 7
Cac8I GCNNGC 3 cut(s) 181, 482, 513
Cfr13I GGNCC 2 cut(s) 32, 308
Csp6I GTAC 1 cut(s) 438
CspCI CAANNNNNGTGG 2 cut(s) 116, 151
CviAII CATG 3 cut(s) 158, 254, 481
CviJI RGCY 8 cut(s) 90, 95, 258, 309, 435, 489, 496, 515
CviKI_1 RGCY 8 cut(s) 90, 95, 258, 309, 435, 489, 496, 515
CviQI GTAC 1 cut(s) 438
DdeI CTNAG 2 cut(s) 27, 108
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
EciI GGCGGA 1 cut(s) 274
Eco31I GGTCTC 2 cut(s) 30, 335
Eco47I GGWCC 1 cut(s) 32
FaeI CATG 3 cut(s) 161, 257, 484
FaiI YATR 5 cut(s) 15, 159, 255, 336, 482
FatI CATG 3 cut(s) 157, 253, 480
Fnu4HI GCNGC 2 cut(s) 172, 360
Fsp4HI GCNGC 2 cut(s) 172, 360
FspBI CTAG 1 cut(s) 389
GluI GCNGC 2 cut(s) 172, 360
GsuI CTGGAG 1 cut(s) 85
HaeIII GGCC 4 cut(s) 90, 309, 435, 489
Hin1II CATG 3 cut(s) 161, 257, 484
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 2 cut(s) 331, 365
HphI GGTGA 2 cut(s) 399, 440
Hpy166II GTNNAC 3 cut(s) 20, 251, 440
Hpy188III TCNNGA 5 cut(s) 6, 328, 416, 422, 464
Hpy8I GTNNAC 3 cut(s) 20, 251, 440
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 2 cut(s) 422, 425
HpyCH4III ACNGT 3 cut(s) 12, 24, 325
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 3 cut(s) 138, 183, 404
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 180, 185, 356, 486
HpyF3I CTNAG 2 cut(s) 27, 108
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 3 cut(s) 161, 257, 484
Kzo9I GATC 1 cut(s) 418
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 9 cut(s) 14, 49, 66, 167, 189, 193, 291, 326, 396
Lsp1109I GCAGC 2 cut(s) 158, 346
LweI GCATC 1 cut(s) 413
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 3 cut(s) 68, 319, 454
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 3 cut(s) 30, 91, 221
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 116
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 2 cut(s) 205, 459
MluNI TGGCCA 1 cut(s) 489
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 4 cut(s) 237, 285, 305, 355
Mox20I TGGCCA 1 cut(s) 489
MscI TGGCCA 1 cut(s) 489
Msp20I TGGCCA 1 cut(s) 489
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 5 cut(s) 60, 180, 185, 356, 486
NdeII GATC 1 cut(s) 418
NlaIII CATG 3 cut(s) 161, 257, 484
NlaIV GGNNCC 2 cut(s) 33, 310
NmeAIII GCCGAG 1 cut(s) 116
NruI TCGCGA 1 cut(s) 7
NspI RCATGY 1 cut(s) 484
PaeI GCATGC 1 cut(s) 484
PfeI GAWTC 1 cut(s) 365
PflMI CCANNNNNTGG 1 cut(s) 63
PkrI GCNGC 2 cut(s) 173, 361
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 33, 310
PspPI GGNCC 2 cut(s) 32, 308
PstI CTGCAG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 418
RruI TCGCGA 1 cut(s) 7
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
SatI GCNGC 2 cut(s) 172, 360
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 2 cut(s) 32, 308
SchI GAGTC 1 cut(s) 325
SduI GDGCHC 1 cut(s) 116
SetI ASST 7 cut(s) 214, 277, 347, 453, 471, 498, 517
SfaNI GCATC 1 cut(s) 413
SfcI CTRYAG 1 cut(s) 181
SinI GGWCC 1 cut(s) 32
SphI GCATGC 1 cut(s) 484
Sse9I AATT 2 cut(s) 205, 459
SsiI CCGC 2 cut(s) 285, 474
SspMI CTAG 1 cut(s) 389
TaaI ACNGT 3 cut(s) 12, 24, 325
TaiI ACGT 1 cut(s) 471
TaqI TCGA 1 cut(s) 465
TasI AATT 2 cut(s) 205, 459
TfiI GAWTC 1 cut(s) 365
TscAI CASTG 1 cut(s) 109
TseI GCWGC 2 cut(s) 171, 359
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 32
XceI RCATGY 1 cut(s) 484
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.