Rorug05G0047900

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000360
Physical Location & Seq
Forward (+)
4184073 .. 4184540
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0047900.1

Sequence Viewer

Length: 468 bp
ATGATCCCAACAAGTCTTCTCTTGGCAACTTTGATCCTCACTGCTTCACTTGGTGGCTTGTCTGCCCGACCTGAGTCCACCGGAGCCTTCTCAGCTGAGCTCAAGCACTCAAACAACAAGAACAAGGGTGGTGGAGCTGGTGGCAATAATGGTGGTGGAAACAATGGCGGCGGCGGCGGCATGGGAGGGTTCTTTGGGCCCGGAGGTGGGTTTGACATACCCGGATTTGGAAAGGGCTTTGGAGGCGGCTATGGTGGAGGGTACGGCGGTCCGAACGGAGGCTCCTCCAAGGGTGGTATCGTGAGGCCTACTCAGGTGTGCAAAGAAAAGGGTCCTTGCTTCAACAAGAAGCTGACATGTCCCGCTAAGTGCTTCACCTCCTACAGCCGCTCAGGGAAGGGCTACGGCGGCGGCGGCGGAGGCGGTGGGTGCACCATCGACTGCAAGAAGTGTACTGCTTATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

155

Amino Acids

14.88

Weight (kDa)

9.46

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 390
AclWI GGATC 1 cut(s) 28
AdeI CACNNNGTG 1 cut(s) 53
AfaI GTAC 2 cut(s) 263, 454
AfiI CCNNNNNNNGG 4 cut(s) 206, 207, 227, 278
AflIII ACRYGT 1 cut(s) 356
AgsI TTSAA 1 cut(s) 343
AloI GAACNNNNNNTCC 2 cut(s) 266, 298
AluBI AGCT 4 cut(s) 95, 100, 137, 352
AluI AGCT 4 cut(s) 95, 100, 137, 352
Alw21I GWGCWC 2 cut(s) 102, 434
Alw44I GTGCAC 1 cut(s) 430
AlwI GGATC 1 cut(s) 28
AoxI GGCC 2 cut(s) 197, 305
ApaI GGGCCC 1 cut(s) 201
ApaLI GTGCAC 1 cut(s) 430
AspS9I GGNCC 4 cut(s) 197, 198, 269, 332
AsuC2I CCSGG 2 cut(s) 201, 222
AsuHPI GGTGA 1 cut(s) 367
AvaII GGWCC 2 cut(s) 269, 332
BaeGI GKGCMC 2 cut(s) 201, 434
BaeI ACNNNNGTAYC 2 cut(s) 253, 286
BanII GRGCYC 2 cut(s) 102, 201
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 2 cut(s) 102, 434
BccI CCATC 1 cut(s) 443
BceAI ACGGC 2 cut(s) 280, 421
BcnI CCSGG 2 cut(s) 201, 222
BfaI CTAG 1 cut(s) 466
BfmI CTRYAG 1 cut(s) 382
BisI GCNGC 9 cut(s) 169, 172, 175, 178, 247, 388, 409, 412, 415
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 9 cut(s) 170, 173, 176, 179, 248, 389, 410, 413, 416
Bme1390I CCNGG 2 cut(s) 201, 222
Bme18I GGWCC 2 cut(s) 269, 332
BmgT120I GGNCC 4 cut(s) 197, 198, 269, 332
BmiI GGNNCC 4 cut(s) 85, 199, 283, 333
BmrFI CCNGG 2 cut(s) 201, 222
BoxI GACNNNNGTC 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 8
BplI GAGNNNNNCTC 2 cut(s) 295, 327
Bpu10I CCTNAGC 1 cut(s) 391
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 2 cut(s) 201, 222
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 207, 227, 278
BseDI CCNNGG 1 cut(s) 288
BseLI CCNNNNNNNGG 4 cut(s) 206, 207, 227, 278
BseMII CTCAG 5 cut(s) 63, 87, 105, 326, 405
BseRI GAGGAG 1 cut(s) 274
BseSI GKGCMC 2 cut(s) 201, 434
BshFI GGCC 2 cut(s) 199, 307
BsiHKAI GWGCWC 2 cut(s) 102, 434
BsiSI CCGG 3 cut(s) 81, 201, 222
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 4 cut(s) 206, 207, 227, 278
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 2 cut(s) 199, 307
Bsp120I GGGCCC 1 cut(s) 197
Bsp1286I GDGCHC 3 cut(s) 102, 201, 434
Bsp143I GATC 2 cut(s) 3, 33
Bsp1720I GCTNAGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 199, 307
BspCNI CTCAG 5 cut(s) 64, 88, 104, 325, 404
BspLI GGNNCC 4 cut(s) 85, 199, 283, 333
BspPI GGATC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 2 cut(s) 3, 33
BssT1I CCWWGG 1 cut(s) 288
BstDEI CTNAG 6 cut(s) 72, 91, 96, 312, 366, 391
BstKTI GATC 2 cut(s) 6, 36
BstMBI GATC 2 cut(s) 3, 33
BstMWI GCNNNNNNNGC 8 cut(s) 92, 174, 177, 243, 408, 414, 420, 429
BstNSI RCATGY 1 cut(s) 360
BstPAI GACNNNNGTC 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 199, 220
BstSFI CTRYAG 1 cut(s) 382
BstSLI GKGCMC 2 cut(s) 201, 434
BstV2I GAAGAC 1 cut(s) 8
BsuRI GGCC 2 cut(s) 199, 307
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cfr13I GGNCC 4 cut(s) 197, 198, 269, 332
CpoI CGGWCCG 1 cut(s) 269
Csp6I GTAC 2 cut(s) 262, 453
CspCI CAANNNNNGTGG 4 cut(s) 112, 133, 147, 168
CspI CGGWCCG 1 cut(s) 269
CviAII CATG 2 cut(s) 181, 357
CviQI GTAC 2 cut(s) 262, 453
DdeI CTNAG 6 cut(s) 72, 91, 96, 312, 366, 391
DpnI GATC 2 cut(s) 5, 35
DpnII GATC 2 cut(s) 3, 33
DraIII CACNNNGTG 1 cut(s) 53
EciI GGCGGA 1 cut(s) 432
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 2 cut(s) 102, 201
Eco47I GGWCC 2 cut(s) 269, 332
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 2 cut(s) 102, 201
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 2 cut(s) 184, 360
FaiI YATR 4 cut(s) 182, 218, 252, 358
FaqI GGGAC 1 cut(s) 345
FatI CATG 2 cut(s) 180, 356
FauI CCCGC 1 cut(s) 370
Fnu4HI GCNGC 9 cut(s) 169, 172, 175, 178, 247, 388, 409, 412, 415
FriOI GRGCYC 2 cut(s) 102, 201
Fsp4HI GCNGC 9 cut(s) 169, 172, 175, 178, 247, 388, 409, 412, 415
FspBI CTAG 1 cut(s) 466
GluI GCNGC 9 cut(s) 169, 172, 175, 178, 247, 388, 409, 412, 415
HaeIII GGCC 2 cut(s) 199, 307
HapII CCGG 3 cut(s) 81, 201, 222
Hin1II CATG 2 cut(s) 184, 360
HinfI GANTC 1 cut(s) 74
HpaII CCGG 3 cut(s) 81, 201, 222
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 3 cut(s) 78, 432, 453
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 301
Hpy8I GTNNAC 3 cut(s) 78, 432, 453
HpyAV CCTTC 2 cut(s) 97, 391
HpyCH4V TGCA 3 cut(s) 321, 432, 444
HpyF10VI GCNNNNNNNGC 8 cut(s) 92, 174, 177, 243, 408, 414, 420, 429
HpyF3I CTNAG 6 cut(s) 72, 91, 96, 312, 366, 391
Hsp92II CATG 2 cut(s) 184, 360
Kzo9I GATC 2 cut(s) 3, 33
LmnI GCTCC 3 cut(s) 83, 134, 287
LpnPI CCDG 7 cut(s) 84, 94, 123, 214, 235, 299, 378
MaeI CTAG 1 cut(s) 466
MalI GATC 2 cut(s) 5, 35
MbiI CCGCTC 1 cut(s) 390
MboI GATC 2 cut(s) 3, 33
MboII GAAGA 1 cut(s) 8
MhlI GDGCHC 3 cut(s) 102, 201, 434
MlyI GAGTC 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 3 cut(s) 81, 201, 222
MspR9I CCNGG 2 cut(s) 201, 222
MwoI GCNNNNNNNGC 8 cut(s) 92, 174, 177, 243, 408, 414, 420, 429
NciI CCSGG 2 cut(s) 201, 222
NdeII GATC 2 cut(s) 3, 33
NlaIII CATG 2 cut(s) 184, 360
NlaIV GGNNCC 4 cut(s) 85, 199, 283, 333
NspI RCATGY 1 cut(s) 360
PceI AGGCCT 1 cut(s) 307
PciI ACATGT 1 cut(s) 356
PkrI GCNGC 9 cut(s) 170, 173, 176, 179, 248, 389, 410, 413, 416
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PpuMI RGGWCCY 1 cut(s) 332
PscI ACATGT 1 cut(s) 356
PshAI GACNNNNGTC 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 332
PspN4I GGNNCC 4 cut(s) 85, 199, 283, 333
PspOMI GGGCCC 1 cut(s) 197
PspPI GGNCC 4 cut(s) 197, 198, 269, 332
PspPPI RGGWCCY 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 263, 454
RsaNI GTAC 2 cut(s) 262, 453
Rsr2I CGGWCCG 1 cut(s) 269
RsrII CGGWCCG 1 cut(s) 269
SacI GAGCTC 1 cut(s) 102
SatI GCNGC 9 cut(s) 169, 172, 175, 178, 247, 388, 409, 412, 415
Sau3AI GATC 2 cut(s) 3, 33
Sau96I GGNCC 4 cut(s) 197, 198, 269, 332
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 201, 222
SduI GDGCHC 3 cut(s) 102, 201, 434
SetI ASST 8 cut(s) 73, 97, 102, 139, 208, 318, 354, 380
SfcI CTRYAG 1 cut(s) 382
SinI GGWCC 2 cut(s) 269, 332
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SseBI AGGCCT 1 cut(s) 307
SspMI CTAG 1 cut(s) 466
SstI GAGCTC 1 cut(s) 102
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 2 cut(s) 199, 220
StyI CCWWGG 1 cut(s) 288
TaqI TCGA 1 cut(s) 438
TatI WGTACW 1 cut(s) 452
TauI GCSGC 9 cut(s) 171, 174, 177, 180, 249, 390, 411, 414, 417
TscAI CASTG 1 cut(s) 46
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 46
VneI GTGCAC 1 cut(s) 430
VpaK11BI GGWCC 2 cut(s) 269, 332
XceI RCATGY 1 cut(s) 360
XspI CTAG 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.