RchiOBHm_Chr5g0019181

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000360
Physical Location & Seq
Forward (+)
13611745 .. 13612969
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29931

Sequence Viewer

Length: 300 bp
ATGACATCTATGGAATTGTATACACAAACCGGGCGTGCTTATGCTCTTGCAGGAATGAGTTCCCGTATGTCGCAAAGGCCCACAACTAGAGGTAACAGAAGAGCCTCCTGTCTCTCTGCTGATTTAGTTGCTTCCATGAGGGGTGTCCATTCCTCTGTTGGTCATGATGCCTCCGGGGCAAATGCTTCATCAGTTGACGCCCCAGGTGATTCTTGTTCCCCAGTTGGTGCTTTTGAAACACCTGCTATGGTCAGAATGGTACTAAAATCACAGAAGAGGAATCAATCTGGTCCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

99

Amino Acids

10.38

Weight (kDa)

10.03

Isoelectric Point (pI)

58.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vwaint PF14624 1 - 88 7.7e-06 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 250
Acc36I ACCTGC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 261
AgsI TTSAA 1 cut(s) 236
AjnI CCWGG 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 78, 290
AsuC2I CCSGG 2 cut(s) 31, 175
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 204
BcnI CCSGG 2 cut(s) 31, 175
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 87
BfuAI ACCTGC 1 cut(s) 250
BglI GCCNNNNNGGC 1 cut(s) 176
Bme1390I CCNGG 3 cut(s) 31, 175, 204
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 78, 290
BmrFI CCNGG 3 cut(s) 31, 175, 204
BmrI ACTGGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 215
BpuMI CCSGG 2 cut(s) 31, 175
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 174, 202
Bse1I ACTGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 174, 202
BseNI ACTGG 1 cut(s) 221
BshFI GGCC 1 cut(s) 79
BsiSI CCGG 2 cut(s) 30, 174
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 79
BspANI GGCC 1 cut(s) 79
BspHI TCATGA 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 250
BspQI GCTCTTC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 174, 202
BssNAI GTATAC 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 198
Bst1107I GTATAC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 204
Bst6I CTCTTC 2 cut(s) 94, 269
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 3 cut(s) 29, 173, 202
BstZ17I GTATAC 1 cut(s) 21
BsuRI GGCC 1 cut(s) 79
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 36
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 78, 290
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 260
CviAII CATG 2 cut(s) 136, 164
CviJI RGCY 2 cut(s) 79, 104
CviKI_1 RGCY 2 cut(s) 79, 104
CviQI GTAC 1 cut(s) 260
Eam1104I CTCTTC 2 cut(s) 94, 269
EarI CTCTTC 2 cut(s) 94, 269
Eco47I GGWCC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 139, 167
FaiI YATR 7 cut(s) 11, 21, 42, 68, 137, 165, 248
FatI CATG 2 cut(s) 135, 163
FblI GTMKAC 1 cut(s) 20
FspBI CTAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 79
HapII CCGG 2 cut(s) 30, 174
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 2 cut(s) 139, 167
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 2 cut(s) 209, 280
HpaII CCGG 2 cut(s) 30, 174
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 21, 196
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 21, 196
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 2 cut(s) 139, 167
LguI GCTCTTC 1 cut(s) 94
LpnPI CCDG 9 cut(s) 36, 43, 121, 187, 189, 216, 234, 255, 273
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 92
MboII GAAGA 2 cut(s) 111, 286
MluCI AATT 1 cut(s) 14
MnlI CCTC 6 cut(s) 83, 115, 132, 163, 181, 270
MroXI GAANNNNTTC 1 cut(s) 58
MspI CCGG 2 cut(s) 30, 174
MspR9I CCNGG 3 cut(s) 31, 175, 204
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 2 cut(s) 31, 175
NlaIII CATG 2 cut(s) 139, 167
PagI TCATGA 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 58
PfeI GAWTC 2 cut(s) 209, 280
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspPI GGNCC 2 cut(s) 78, 290
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 94
Sau96I GGNCC 2 cut(s) 78, 290
ScrFI CCNGG 3 cut(s) 31, 175, 204
SetI ASST 3 cut(s) 94, 208, 244
SfaNI GCATC 1 cut(s) 157
SinI GGWCC 1 cut(s) 290
Sse9I AATT 1 cut(s) 14
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 3 cut(s) 29, 173, 202
TasI AATT 1 cut(s) 14
TfiI GAWTC 2 cut(s) 209, 280
TspDTI ATGAA 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.