Rh5CG150000

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000360
Physical Location & Seq
Forward (+)
13777544 .. 13777834
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG150000.1

Sequence Viewer

Length: 291 bp
ATGGAATTGTATACACAAACCGGGCGTGCTTATGCTCTTGCAGGAATGAGTTCCCGTATGTCGCAAAGGCCCACAACTAGAGGTAACAGAAGAGCCTCCTGTCTCTCTGCTGATTTAGTTGCTTCCATGAGGGGTGTCCATTCCTCTGTTGGTCATGATGCCTCCGGGGCAAATGCTTCATCAGTTGACGCCCCAGGTGATTCTTGTTCCCCAGTTGGTGCTTTTGAAACACCTGCTATGGTCAGAATGGTACTAAAATCACAGAAGAGGAATCAATCTGGTCCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

96

Amino Acids

10.07

Weight (kDa)

10.03

Isoelectric Point (pI)

60.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 241
Acc36I ACCTGC 1 cut(s) 241
AccI GTMKAC 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 252
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 107
AoxI GGCC 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 49
AspS9I GGNCC 2 cut(s) 69, 281
AsuC2I CCSGG 2 cut(s) 22, 166
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 195
BcnI CCSGG 2 cut(s) 22, 166
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 241
BglI GCCNNNNNGGC 1 cut(s) 167
Bme1390I CCNGG 3 cut(s) 22, 166, 195
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 69, 281
BmrFI CCNGG 3 cut(s) 22, 166, 195
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 206
BpuMI CCSGG 2 cut(s) 22, 166
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 165, 193
Bse1I ACTGG 1 cut(s) 212
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 165, 193
BseNI ACTGG 1 cut(s) 212
BshFI GGCC 1 cut(s) 70
BsiSI CCGG 2 cut(s) 21, 165
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 1 cut(s) 70
BspANI GGCC 1 cut(s) 70
BspHI TCATGA 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 241
BspQI GCTCTTC 1 cut(s) 85
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 165, 193
BssNAI GTATAC 1 cut(s) 12
BssNI GRCGYC 1 cut(s) 189
Bst1107I GTATAC 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 195
Bst6I CTCTTC 2 cut(s) 85, 260
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 3 cut(s) 20, 164, 193
BstZ17I GTATAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 70
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 27
CciI TCATGA 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 69, 281
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 251
CviAII CATG 2 cut(s) 127, 155
CviJI RGCY 2 cut(s) 70, 95
CviKI_1 RGCY 2 cut(s) 70, 95
CviQI GTAC 1 cut(s) 251
Eam1104I CTCTTC 2 cut(s) 85, 260
EarI CTCTTC 2 cut(s) 85, 260
Eco47I GGWCC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 193
FaeI CATG 2 cut(s) 130, 158
FaiI YATR 6 cut(s) 12, 33, 59, 128, 156, 239
FatI CATG 2 cut(s) 126, 154
FblI GTMKAC 1 cut(s) 11
FspBI CTAG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 70
HapII CCGG 2 cut(s) 21, 165
HgaI GACGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 2 cut(s) 130, 158
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 2 cut(s) 200, 271
HpaII CCGG 2 cut(s) 21, 165
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 12, 187
Hpy188I TCNGA 1 cut(s) 245
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 2 cut(s) 12, 187
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 2 cut(s) 130, 158
LguI GCTCTTC 1 cut(s) 85
LpnPI CCDG 9 cut(s) 27, 34, 112, 178, 180, 207, 225, 246, 264
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 83
MboII GAAGA 2 cut(s) 102, 277
MluCI AATT 1 cut(s) 5
MnlI CCTC 6 cut(s) 74, 106, 123, 154, 172, 261
MroXI GAANNNNTTC 1 cut(s) 49
MspI CCGG 2 cut(s) 21, 165
MspR9I CCNGG 3 cut(s) 22, 166, 195
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 167
NciI CCSGG 2 cut(s) 22, 166
NlaIII CATG 2 cut(s) 130, 158
PagI TCATGA 1 cut(s) 154
PaqCI CACCTGC 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 200, 271
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspPI GGNCC 2 cut(s) 69, 281
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 69, 281
ScrFI CCNGG 3 cut(s) 22, 166, 195
SetI ASST 3 cut(s) 85, 199, 235
SfaNI GCATC 1 cut(s) 148
SinI GGWCC 1 cut(s) 281
Sse9I AATT 1 cut(s) 5
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 20, 164, 193
TasI AATT 1 cut(s) 5
TfiI GAWTC 2 cut(s) 200, 271
TspDTI ATGAA 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 281
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.