Rroxscaffold_1G00074090

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000360
Physical Location & Seq
Forward (+)
95027869 .. 95028366
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074090.1

Sequence Viewer

Length: 498 bp
ATGAACCTCTCGTCCGCCACACTCCAAACTTCTGGCCCCCAGAATGTAACAGTCAAGACTCATACAGAGACCTCTGCTATCTCTGCTGCCGAATCACGCCCCCATTATCCTGTTCTAGTTAGCATTTGTGCACCACCCCTTCAAGATCCCGATGGTGAAGGCCGTACACCCATTGACCTTGTTACAATTCTGGACGTAAGCGGTAGCATGGTTGGCCAAAAGCTTGAACTTGTCAAGCAAGCTGTCAAATTCGTCATTGAAAACATGGGGACTTCAGACAGACTGTCTATAGTATCATTCTCAGCAACTTCTAAACGACTCCTTCCTCTCCGTAGAATGACTGTTGAGGGCCGTGAAAGTGCAATTCAAGCTGTCGAATCTCTTAGAGCAGATGGTGGAACTGACATTGCAGAAGGACTCAAGATAGGAACTCATATCCTTGAGGAGCGAAGGAAAGGAACCCTGTTGCTAGTATCATCCTCTTATCGGATGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

165

Amino Acids

17.7

Weight (kDa)

6.84

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA PF00092 59 - 153 5.9e-14 von Willebrand factor type A domain
VWA_3 PF13768 59 - 141 3.6e-09 von Willebrand factor type A domain
VWA_2 PF13519 60 - 159 2e-15 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 15, 201
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 486
AgsI TTSAA 4 cut(s) 143, 227, 260, 368
AhdI GACNNNNNGTC 1 cut(s) 283
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 3 cut(s) 223, 242, 371
AluI AGCT 3 cut(s) 223, 242, 371
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 62
Alw44I GTGCAC 1 cut(s) 129
AlwI GGATC 1 cut(s) 140
AoxI GGCC 5 cut(s) 34, 160, 214, 349, 492
ApaLI GTGCAC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 35, 349
AsuHPI GGTGA 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 133
BalI TGGCCA 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 73
BccI CCATC 3 cut(s) 146, 386, 484
BceAI ACGGC 2 cut(s) 147, 336
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 3 cut(s) 116, 470, 496
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmeRI GACNNNNNGTC 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 35, 349
BmiI GGNNCC 2 cut(s) 37, 460
BpuEI CTTGAG 2 cut(s) 404, 461
BsaI GGTCTC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse3DI GCAATG 1 cut(s) 405
BseGI GGATG 2 cut(s) 476, 495
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 458
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 5 cut(s) 36, 162, 216, 351, 494
BsiHKAI GWGCWC 1 cut(s) 133
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 486
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 5 cut(s) 36, 162, 216, 351, 494
Bso31I GGTCTC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 2 cut(s) 15, 201
BspANI GGCC 5 cut(s) 36, 162, 216, 351, 494
BspCNI CTCAG 1 cut(s) 314
BspLI GGNNCC 2 cut(s) 37, 460
BspPI GGATC 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 405
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 3 cut(s) 52, 285, 343
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 2 cut(s) 301, 383
BstF5I GGATG 2 cut(s) 476, 495
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 3 cut(s) 83, 213, 368
BstSFI CTRYAG 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 32
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 5 cut(s) 36, 162, 216, 351, 494
BtsCI GGATG 2 cut(s) 476, 495
Cac8I GCNNGC 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 35, 349
Csp6I GTAC 1 cut(s) 165
CviAII CATG 2 cut(s) 208, 265
CviJI RGCY 8 cut(s) 36, 162, 216, 223, 242, 351, 371, 494
CviKI_1 RGCY 8 cut(s) 36, 162, 216, 223, 242, 351, 371, 494
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 2 cut(s) 301, 383
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
DriI GACNNNNNGTC 1 cut(s) 283
EaeI YGGCCR 1 cut(s) 214
Eam1105I GACNNNNNGTC 1 cut(s) 283
EciI GGCGGA 1 cut(s) 4
Eco31I GGTCTC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 258
FaeI CATG 2 cut(s) 211, 268
FaiI YATR 5 cut(s) 63, 209, 266, 290, 435
FaqI GGGAC 1 cut(s) 283
FatI CATG 2 cut(s) 207, 264
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 463
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 3 cut(s) 116, 470, 496
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 5 cut(s) 36, 162, 216, 351, 494
Hin1II CATG 2 cut(s) 211, 268
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 5 cut(s) 58, 92, 318, 377, 417
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 131, 167
Hpy188I TCNGA 2 cut(s) 277, 489
Hpy188III TCNNGA 5 cut(s) 55, 143, 149, 191, 421
Hpy8I GTNNAC 2 cut(s) 131, 167
HpyAV CCTTC 5 cut(s) 149, 152, 332, 407, 444
HpyCH4III ACNGT 3 cut(s) 52, 285, 343
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 131, 362, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 213, 368
HpyF3I CTNAG 2 cut(s) 301, 383
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 2 cut(s) 211, 268
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 5 cut(s) 18, 53, 123, 176, 476
Lsp1109I GCAGC 1 cut(s) 73
MaeI CTAG 3 cut(s) 116, 470, 496
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 46, 181
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 3 cut(s) 186, 248, 363
MluNI TGGCCA 1 cut(s) 216
MlyI GAGTC 3 cut(s) 52, 312, 411
MnlI CCTC 6 cut(s) 17, 82, 336, 340, 436, 490
Mox20I TGGCCA 1 cut(s) 216
MscI TGGCCA 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 216
MwoI GCNNNNNNNGC 3 cut(s) 83, 213, 368
NdeII GATC 1 cut(s) 145
NlaIII CATG 2 cut(s) 211, 268
NlaIV GGNNCC 2 cut(s) 37, 460
PfeI GAWTC 2 cut(s) 92, 377
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 3 cut(s) 52, 312, 411
PpsI GAGTC 3 cut(s) 52, 312, 411
PspN4I GGNNCC 2 cut(s) 37, 460
PspPI GGNCC 2 cut(s) 35, 349
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 35, 349
SchI GAGTC 3 cut(s) 52, 312, 411
SduI GDGCHC 1 cut(s) 133
SetI ASST 7 cut(s) 9, 74, 180, 198, 225, 244, 373
SfcI CTRYAG 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 419, 440
SmoI CTYRAG 2 cut(s) 419, 440
Sse9I AATT 3 cut(s) 186, 248, 363
SsiI CCGC 2 cut(s) 15, 201
SspMI CTAG 3 cut(s) 116, 470, 496
TaaI ACNGT 3 cut(s) 52, 285, 343
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 375
TasI AATT 3 cut(s) 186, 248, 363
TfiI GAWTC 2 cut(s) 92, 377
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 320
VneI GTGCAC 1 cut(s) 129
XapI RAATTY 1 cut(s) 248
XspI CTAG 3 cut(s) 116, 470, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.