Rmu_sc0042836.1_g000001

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042836.1
OG0000360
Physical Location & Seq
Forward (+)
5 .. 436
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042836.1_g000001.1.cds

Sequence Viewer

Length: 432 bp
atgggaaatctgcagggcgcacaggctcttttggctcaacgaaaggcaattatattagcatcaccagcggcccaagccggagattttcacagtaatttgtttgaaactgagctaagagaaatcactgatagaatggcatctatggaattgtatacacaaaccgggcgtgcttatgctcttgcaggaatgagttcccgtatgtcgcaaaggcccataactagaggtaacagaagagcctcttgtctctctgctgatttagttgcttccatgacgggtgtccattcctatgttggtcaagatgcctccggggcaaatgcttcatcagttgactccccaggtgattcttcttccccagttggtgcttttgaaacacctgctatggtcagaatggaactaaaatcacagaagaggaatcaatctggtcaattctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

143

Amino Acids

15.19

Weight (kDa)

8.97

Isoelectric Point (pI)

56.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 382
Acc36I ACCTGC 1 cut(s) 382
AccI GTMKAC 1 cut(s) 152
AciI CCGC 1 cut(s) 68
AgsI TTSAA 2 cut(s) 104, 368
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 248
AoxI GGCC 2 cut(s) 69, 209
Asp700I GAANNNNTTC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 70, 210
AsuC2I CCSGG 2 cut(s) 163, 307
AsuHPI GGTGA 2 cut(s) 54, 350
BciT130I CCWGG 1 cut(s) 336
BcnI CCSGG 2 cut(s) 163, 307
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 382
BglI GCCNNNNNGGC 1 cut(s) 308
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 3 cut(s) 163, 307, 336
BmgT120I GGNCC 2 cut(s) 70, 210
BmrFI CCNGG 3 cut(s) 163, 307, 336
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 3 cut(s) 68, 146, 289
BmuI ACTGGG 1 cut(s) 347
BoxI GACNNNNGTC 1 cut(s) 275
BpuMI CCSGG 2 cut(s) 163, 307
BsaJI CCNNGG 2 cut(s) 306, 334
Bse1I ACTGG 1 cut(s) 353
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 306, 334
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 353
BshFI GGCC 2 cut(s) 71, 211
BsiSI CCGG 3 cut(s) 78, 162, 306
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 2 cut(s) 71, 211
BspACI CCGC 1 cut(s) 68
BspANI GGCC 2 cut(s) 71, 211
BspCNI CTCAG 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 382
BspQI GCTCTTC 1 cut(s) 226
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 306, 334
BssNAI GTATAC 1 cut(s) 153
Bst1107I GTATAC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 2 cut(s) 226, 401
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 108, 113
BstHHI GCGC 1 cut(s) 20
BstMAI GTCTC 1 cut(s) 248
BstMWI GCNNNNNNNGC 4 cut(s) 32, 65, 74, 308
BstNI CCWGG 1 cut(s) 336
BstPAI GACNNNNGTC 1 cut(s) 275
BstSCI CCNGG 3 cut(s) 161, 305, 334
BstSFI CTRYAG 1 cut(s) 11
BstZ17I GTATAC 1 cut(s) 153
BsuRI GGCC 2 cut(s) 71, 211
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 70, 210
CviAII CATG 1 cut(s) 268
CviJI RGCY 7 cut(s) 26, 35, 71, 77, 112, 211, 236
CviKI_1 RGCY 7 cut(s) 26, 35, 71, 77, 112, 211, 236
DdeI CTNAG 2 cut(s) 108, 113
Eam1104I CTCTTC 2 cut(s) 226, 401
EarI CTCTTC 2 cut(s) 226, 401
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 1 cut(s) 271
FaiI YATR 9 cut(s) 53, 143, 153, 174, 200, 215, 269, 288, 380
FalI AAGNNNNNCTT 2 cut(s) 223, 255
FatI CATG 1 cut(s) 267
FblI GTMKAC 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 2 cut(s) 71, 211
HapII CCGG 3 cut(s) 78, 162, 306
HhaI GCGC 1 cut(s) 20
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 3 cut(s) 329, 341, 412
HpaII CCGG 3 cut(s) 78, 162, 306
HphI GGTGA 2 cut(s) 54, 350
Hpy166II GTNNAC 2 cut(s) 153, 328
Hpy188I TCNGA 1 cut(s) 386
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 2 cut(s) 153, 328
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 13, 182
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 65, 74, 308
HpyF3I CTNAG 2 cut(s) 108, 113
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 1 cut(s) 18
LguI GCTCTTC 1 cut(s) 226
LweI GCATC 3 cut(s) 68, 146, 289
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 224
MboII GAAGA 4 cut(s) 243, 336, 339, 418
MluCI AATT 4 cut(s) 48, 94, 146, 425
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 4 cut(s) 215, 247, 313, 402
MroXI GAANNNNTTC 1 cut(s) 190
MslI CAYNNNNRTG 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 3 cut(s) 78, 162, 306
MspR9I CCNGG 3 cut(s) 163, 307, 336
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 4 cut(s) 32, 65, 74, 308
NciI CCSGG 2 cut(s) 163, 307
NlaIII CATG 1 cut(s) 271
PaqCI CACCTGC 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 341, 412
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
PshAI GACNNNNGTC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 2 cut(s) 70, 210
PstI CTGCAG 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 226
SatI GCNGC 1 cut(s) 69
Sau96I GGNCC 2 cut(s) 70, 210
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 3 cut(s) 163, 307, 336
SetI ASST 4 cut(s) 114, 226, 340, 376
SfaNI GCATC 3 cut(s) 68, 146, 289
SfcI CTRYAG 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 4 cut(s) 48, 94, 146, 425
SsiI CCGC 1 cut(s) 68
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 3 cut(s) 161, 305, 334
TaaI ACNGT 1 cut(s) 92
TasI AATT 4 cut(s) 48, 94, 146, 425
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 2 cut(s) 341, 412
TscAI CASTG 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 309
TspRI CASTG 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 190
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.