Rroxscaffold_1G00074110

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000360
Physical Location & Seq
Forward (+)
95054644 .. 95055712
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074110.1

Sequence Viewer

Length: 588 bp
ATGTCGTCTCAGGATGCATCTGCTCAAAAAAATTGCGCAATCTGCTGGAGTAACGTGACAACAGGGCAAGGCCAAGCCATCTTCACTGCTGAGTGCTCACACTCTTTCCACTACCCTTGCATTGCCAACAATGTCCAGTATGGAAATCTTTGCTGCCCCATCTGCCGAGCAAAATGGGATAAGAATAATGTTCCTTTCCAAGTTCCCCCGCTTCAACAAAACAACTTGGGTGCACATGGCTTCGCTGATGATGAACCTCTCCCGTTCACCTCACCTGCTCAATCTTCTGGCCCCCAGAATGTCACAATCAAAACTCATACAGAGACCTCTGCTATCCCTGCTGCCGATTCACGCCCACAATATCCTGTTCTAGTAAGCATCTGTGCACCACCCCTTCAGGATCCCGATGGCGAAGTCCGTACACCGATTGACCTTGTAACAGTTCTAGACGTAAGTGGCAGCATGCAGGGCCAAAAGCTTGACCTTGTCAAGCAAGCTATCAAATTTGTCATAGAAAACATGGGGTCTTCAGATAGACTTTCTATAGTTTCATTCTCAACAAATTCTAGAAGAGTCCTTCCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

195

Amino Acids

21.06

Weight (kDa)

5.73

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_11 PF17123 11 - 41 1.2e-10 RING-like zinc finger
zf-RING_2 PF13639 11 - 56 4.8e-07 Ring finger domain
zf-C3HC4 PF00097 12 - 55 9.8e-06 Zinc finger, C3HC4 type (RING finger)
VWA PF00092 144 - 195 5.4e-09 von Willebrand factor type A domain
VWA_3 PF13768 144 - 194 2.1e-07 von Willebrand factor type A domain
VWA_2 PF13519 145 - 195 5.6e-08 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 283
Acc16I TGCGCA 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 283
AciI CCGC 1 cut(s) 209
AclWI GGATC 2 cut(s) 395, 408
AcsI RAATTY 2 cut(s) 503, 562
AcuI CTGAAG 2 cut(s) 380, 513
AfaI GTAC 1 cut(s) 421
AgsI TTSAA 1 cut(s) 215
AluBI AGCT 2 cut(s) 478, 497
AluI AGCT 2 cut(s) 478, 497
Alw21I GWGCWC 3 cut(s) 98, 235, 388
Alw26I GTCTC 2 cut(s) 12, 317
Alw44I GTGCAC 2 cut(s) 231, 384
AlwI GGATC 2 cut(s) 395, 408
AoxI GGCC 3 cut(s) 70, 289, 469
ApaLI GTGCAC 2 cut(s) 231, 384
ApeKI GCWGC 3 cut(s) 153, 341, 459
ApoI RAATTY 2 cut(s) 503, 562
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 290, 469
AsuHPI GGTGA 2 cut(s) 259, 264
BaeGI GKGCMC 2 cut(s) 235, 388
BamHI GGATCC 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 3 cut(s) 98, 235, 388
BbvI GCAGC 3 cut(s) 140, 328, 471
BccI CCATC 3 cut(s) 86, 167, 401
BcoDI GTCTC 2 cut(s) 12, 317
BfaI CTAG 3 cut(s) 371, 446, 567
BfmI CTRYAG 1 cut(s) 543
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 3 cut(s) 154, 342, 460
BlsI GCNGC 3 cut(s) 155, 343, 461
BmgT120I GGNCC 2 cut(s) 290, 469
BmiI GGNNCC 2 cut(s) 292, 402
BmsI GCATC 3 cut(s) 4, 26, 387
BpiI GAAGAC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 67
BsaI GGTCTC 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 120
BseGI GGATG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 23, 81
BseNI ACTGG 1 cut(s) 136
BseSI GKGCMC 2 cut(s) 235, 388
BseXI GCAGC 3 cut(s) 140, 328, 471
BshFI GGCC 3 cut(s) 72, 291, 471
BsiHKAI GWGCWC 3 cut(s) 98, 235, 388
BsmAI GTCTC 2 cut(s) 12, 317
BsmBI CGTCTC 1 cut(s) 12
BsnI GGCC 3 cut(s) 72, 291, 471
Bso31I GGTCTC 1 cut(s) 317
Bsp1286I GDGCHC 3 cut(s) 98, 235, 388
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 1 cut(s) 209
BspANI GGCC 3 cut(s) 72, 291, 471
BspCNI CTCAG 2 cut(s) 22, 82
BspLI GGNNCC 2 cut(s) 292, 402
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 2 cut(s) 395, 408
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 136
BssMI GATC 1 cut(s) 400
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 1 cut(s) 565
BstC8I GCNNGC 2 cut(s) 464, 495
BstDEI CTNAG 2 cut(s) 9, 90
BstF5I GGATG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 2 cut(s) 12, 317
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 4 cut(s) 42, 162, 338, 468
BstNSI RCATGY 1 cut(s) 466
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 2 cut(s) 235, 388
BstV1I GCAGC 3 cut(s) 140, 328, 471
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 3 cut(s) 72, 291, 471
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 2 cut(s) 464, 495
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 290, 469
Csp6I GTAC 1 cut(s) 420
CspCI CAANNNNNGTGG 2 cut(s) 98, 133
CviAII CATG 3 cut(s) 236, 463, 520
CviJI RGCY 7 cut(s) 72, 77, 240, 291, 471, 478, 497
CviKI_1 RGCY 7 cut(s) 72, 77, 240, 291, 471, 478, 497
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 2 cut(s) 9, 90
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 565
EarI CTCTTC 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 380, 513
EcoT22I ATGCAT 1 cut(s) 19
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 3 cut(s) 239, 466, 523
FaiI YATR 7 cut(s) 141, 237, 318, 464, 512, 521, 545
FatI CATG 3 cut(s) 235, 462, 519
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 154, 342, 460
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 3 cut(s) 154, 342, 460
FspBI CTAG 3 cut(s) 371, 446, 567
FspI TGCGCA 1 cut(s) 37
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 154, 342, 460
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 3 cut(s) 72, 291, 471
HhaI GCGC 1 cut(s) 38
Hin1II CATG 3 cut(s) 239, 466, 523
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 2 cut(s) 347, 573
HphI GGTGA 2 cut(s) 259, 264
Hpy166II GTNNAC 4 cut(s) 233, 267, 386, 422
Hpy188I TCNGA 1 cut(s) 532
Hpy188III TCNNGA 5 cut(s) 11, 398, 404, 446, 567
Hpy8I GTNNAC 4 cut(s) 233, 267, 386, 422
HpyAV CCTTC 2 cut(s) 404, 587
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 2 cut(s) 54, 450
HpyCH4V TGCA 5 cut(s) 17, 120, 233, 386, 466
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 162, 338, 468
HpyF3I CTNAG 2 cut(s) 9, 90
HpySE526I ACGT 2 cut(s) 54, 450
Hsp92II CATG 3 cut(s) 239, 466, 523
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 1 cut(s) 400
Lsp1109I GCAGC 3 cut(s) 140, 328, 471
LweI GCATC 3 cut(s) 4, 26, 387
MaeI CTAG 3 cut(s) 371, 446, 567
MaeII ACGT 2 cut(s) 54, 450
MaeIII GTNAC 4 cut(s) 50, 55, 301, 436
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 4 cut(s) 73, 276, 519, 582
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 3 cut(s) 98, 235, 388
MluCI AATT 3 cut(s) 31, 503, 562
MlyI GAGTC 1 cut(s) 582
MnlI CCTC 3 cut(s) 267, 280, 337
Mph1103I ATGCAT 1 cut(s) 19
MwoI GCNNNNNNNGC 4 cut(s) 42, 162, 338, 468
NdeII GATC 1 cut(s) 400
NlaIII CATG 3 cut(s) 239, 466, 523
NlaIV GGNNCC 2 cut(s) 292, 402
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 2 cut(s) 55, 301
NsbI TGCGCA 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 19
NspI RCATGY 1 cut(s) 466
PaeI GCATGC 1 cut(s) 466
PaqCI CACCTGC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 347
PflFI GACNNNGTC 1 cut(s) 485
PkrI GCNGC 3 cut(s) 155, 343, 461
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
PspN4I GGNNCC 2 cut(s) 292, 402
PspPI GGNCC 2 cut(s) 290, 469
PsuI RGATCY 1 cut(s) 400
PsyI GACNNNGTC 1 cut(s) 485
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
SatI GCNGC 3 cut(s) 154, 342, 460
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 2 cut(s) 290, 469
SchI GAGTC 1 cut(s) 582
SduI GDGCHC 3 cut(s) 98, 235, 388
SfaNI GCATC 3 cut(s) 4, 26, 387
SfcI CTRYAG 1 cut(s) 543
SphI GCATGC 1 cut(s) 466
Sse9I AATT 3 cut(s) 31, 503, 562
SsiI CCGC 1 cut(s) 209
SspMI CTAG 3 cut(s) 371, 446, 567
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 2 cut(s) 57, 453
TasI AATT 3 cut(s) 31, 503, 562
TfiI GAWTC 1 cut(s) 347
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 2 cut(s) 55, 301
TseI GCWGC 3 cut(s) 153, 341, 459
Tsp45I GTSAC 2 cut(s) 55, 301
TspDTI ATGAA 2 cut(s) 267, 540
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 1 cut(s) 91
Tth111I GACNNNGTC 1 cut(s) 485
VneI GTGCAC 2 cut(s) 231, 384
XapI RAATTY 2 cut(s) 503, 562
XbaI TCTAGA 2 cut(s) 445, 566
XceI RCATGY 1 cut(s) 466
XspI CTAG 3 cut(s) 371, 446, 567
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.