Rh4DG102800

VWA domain containing CoxE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000360
Physical Location & Seq
Forward (+)
15772255 .. 15772728
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG102800.1

Sequence Viewer

Length: 474 bp
ATGGGAAACCTGGAAGGTGCACGGGCACTTTTGGCTGAACGAAGAGCAACTGTCTTAGCATCAGCAGCAGCTCAAGCTGGGGATGGTCTTAGTAATTTGTTTGAAACTGAGCTTAGAGAAGTCATGGAGAGAATGGCATCTATGGACTTGTACGCTAACTCAGGGCGTGCTTACGCTCTCGCAGGGATGAGTTCTCATTCTCGACAGAGGGCTTCAGCCAGGGGTGACACAACAACCTCATGTCTCTTTGGTGCCTCCAACCGTGTGAATTTCTCTAGCGGTGGCAATGCCTTAATGCAGCAGTCAGGTGCCTCTGCTTGTTTTGGCGCCCCTGCAGGTTTCGGTGGTGCTAGTTTTTCATCCGGTGCCGCTCCAGGTGGAAGTCAATGCTCTTCTGCAGTTGGTGCTTTTGAAACACCTGCTATGGTTAGAATGGTAGAAAAATCACAGAAGAGCAATCAATCTGGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

157

Amino Acids

15.92

Weight (kDa)

8.61

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vwaint PF14624 35 - 150 4.7e-13 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 427
Acc36I ACCTGC 2 cut(s) 326, 427
AccB1I GGYRCC 4 cut(s) 251, 308, 326, 365
AccBSI CCGCTC 1 cut(s) 371
AciI CCGC 2 cut(s) 279, 369
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 2 cut(s) 104, 413
AjnI CCWGG 3 cut(s) 9, 218, 373
AluBI AGCT 3 cut(s) 71, 77, 112
AluI AGCT 3 cut(s) 71, 77, 112
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 248
Alw44I GTGCAC 1 cut(s) 18
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 65, 68, 298
ApoI RAATTY 1 cut(s) 268
AspLEI GCGC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 236
BaeGI GKGCMC 2 cut(s) 22, 28
BanI GGYRCC 4 cut(s) 251, 308, 326, 365
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 3 cut(s) 77, 80, 310
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 3 cut(s) 11, 220, 375
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 2 cut(s) 276, 351
BfmI CTRYAG 2 cut(s) 333, 396
BfoI RGCGCY 1 cut(s) 330
BfuAI ACCTGC 2 cut(s) 326, 427
BisI GCNGC 4 cut(s) 66, 69, 299, 369
BlsI GCNGC 4 cut(s) 67, 70, 300, 370
Bme1390I CCNGG 3 cut(s) 11, 220, 375
BmiI GGNNCC 4 cut(s) 253, 310, 328, 367
BmrFI CCNGG 3 cut(s) 11, 220, 375
BmsI GCATC 2 cut(s) 68, 146
BpmI CTGGAG 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 292
BseBI CCWGG 3 cut(s) 11, 220, 375
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 3 cut(s) 88, 192, 359
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 2 cut(s) 99, 174
BseSI GKGCMC 2 cut(s) 22, 28
BseXI GCAGC 3 cut(s) 77, 80, 310
BseYI CCCAGC 1 cut(s) 77
BshNI GGYRCC 4 cut(s) 251, 308, 326, 365
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 22, 28
BspACI CCGC 2 cut(s) 279, 369
BspCNI CTCAG 2 cut(s) 100, 173
BspLI GGNNCC 4 cut(s) 253, 310, 328, 367
BspMAI CTGCAG 2 cut(s) 337, 400
BspMI ACCTGC 2 cut(s) 326, 427
BspQI GCTCTTC 3 cut(s) 37, 397, 446
BspT107I GGYRCC 4 cut(s) 251, 308, 326, 365
BsrBI CCGCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 219
BssNI GRCGYC 1 cut(s) 327
Bst2UI CCWGG 3 cut(s) 11, 220, 375
Bst4CI ACNGT 2 cut(s) 52, 263
Bst6I CTCTTC 3 cut(s) 37, 397, 446
BstACI GRCGYC 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 5 cut(s) 55, 89, 108, 113, 160
BstF5I GGATG 3 cut(s) 88, 192, 359
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 1 cut(s) 329
BstMAI GTCTC 1 cut(s) 248
BstMWI GCNNNNNNNGC 4 cut(s) 32, 65, 74, 404
BstNI CCWGG 3 cut(s) 11, 220, 375
BstSCI CCNGG 3 cut(s) 9, 218, 373
BstSFI CTRYAG 2 cut(s) 333, 396
BstSLI GKGCMC 2 cut(s) 22, 28
BstV1I GCAGC 3 cut(s) 77, 80, 310
BtsCI GGATG 3 cut(s) 88, 192, 359
BveI ACCTGC 2 cut(s) 326, 427
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 151
CviAII CATG 2 cut(s) 124, 240
CviJI RGCY 6 cut(s) 35, 71, 77, 112, 212, 218
CviKI_1 RGCY 6 cut(s) 35, 71, 77, 112, 212, 218
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 5 cut(s) 55, 89, 108, 113, 160
DinI GGCGCC 1 cut(s) 328
Eam1104I CTCTTC 3 cut(s) 37, 397, 446
EarI CTCTTC 3 cut(s) 37, 397, 446
Eco57I CTGAAG 1 cut(s) 198
EcoRII CCWGG 3 cut(s) 9, 218, 373
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
FaeI CATG 2 cut(s) 127, 243
FaiI YATR 4 cut(s) 125, 143, 241, 425
FatI CATG 2 cut(s) 123, 239
Fnu4HI GCNGC 4 cut(s) 66, 69, 299, 369
FokI GGATG 3 cut(s) 95, 199, 346
Fsp4HI GCNGC 4 cut(s) 66, 69, 299, 369
FspBI CTAG 2 cut(s) 276, 351
GlaI GCGC 1 cut(s) 328
GluI GCNGC 4 cut(s) 66, 69, 299, 369
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 330
HapII CCGG 1 cut(s) 363
HhaI GCGC 1 cut(s) 329
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 2 cut(s) 127, 243
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HpaII CCGG 1 cut(s) 363
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 2 cut(s) 52, 263
HpyCH4V TGCA 4 cut(s) 20, 298, 335, 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 65, 74, 404
HpyF3I CTNAG 5 cut(s) 55, 89, 108, 113, 160
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 2 cut(s) 127, 243
HspAI GCGC 1 cut(s) 327
KasI GGCGCC 1 cut(s) 326
LguI GCTCTTC 3 cut(s) 37, 397, 446
LmnI GCTCC 1 cut(s) 376
Lsp1109I GCAGC 3 cut(s) 77, 80, 310
LweI GCATC 2 cut(s) 68, 146
MaeI CTAG 2 cut(s) 276, 351
MaeIII GTNAC 1 cut(s) 224
MbiI CCGCTC 1 cut(s) 371
MboII GAAGA 3 cut(s) 54, 384, 463
MhlI GDGCHC 2 cut(s) 22, 28
MluCI AATT 2 cut(s) 94, 268
Mly113I GGCGCC 1 cut(s) 327
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 4 cut(s) 201, 247, 265, 322
MseI TTAA 1 cut(s) 293
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 3 cut(s) 11, 220, 375
MvaI CCWGG 3 cut(s) 11, 220, 375
MwoI GCNNNNNNNGC 4 cut(s) 32, 65, 74, 404
NarI GGCGCC 1 cut(s) 327
NlaIII CATG 2 cut(s) 127, 243
NlaIV GGNNCC 4 cut(s) 253, 310, 328, 367
NmuCI GTSAC 1 cut(s) 224
PaqCI CACCTGC 1 cut(s) 427
PciSI GCTCTTC 3 cut(s) 37, 397, 446
PkrI GCNGC 4 cut(s) 67, 70, 300, 370
PluTI GGCGCC 1 cut(s) 330
Psp6I CCWGG 3 cut(s) 9, 218, 373
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 3 cut(s) 9, 218, 373
PspN4I GGNNCC 4 cut(s) 253, 310, 328, 367
PstI CTGCAG 2 cut(s) 337, 400
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SapI GCTCTTC 3 cut(s) 37, 397, 446
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 4 cut(s) 66, 69, 299, 369
SbfI CCTGCAGG 1 cut(s) 337
ScrFI CCNGG 3 cut(s) 11, 220, 375
SdaI CCTGCAGG 1 cut(s) 337
SduI GDGCHC 2 cut(s) 22, 28
SfaNI GCATC 2 cut(s) 68, 146
SfcI CTRYAG 2 cut(s) 333, 396
SfoI GGCGCC 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse8387I CCTGCAGG 1 cut(s) 337
Sse9I AATT 2 cut(s) 94, 268
SsiI CCGC 2 cut(s) 279, 369
SspDI GGCGCC 1 cut(s) 326
SspMI CTAG 2 cut(s) 276, 351
StyD4I CCNGG 3 cut(s) 9, 218, 373
TaaI ACNGT 2 cut(s) 52, 263
TaqI TCGA 1 cut(s) 202
TasI AATT 2 cut(s) 94, 268
TauI GCSGC 1 cut(s) 371
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 3 cut(s) 65, 68, 298
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 348
VneI GTGCAC 1 cut(s) 18
XapI RAATTY 1 cut(s) 268
XspI CTAG 2 cut(s) 276, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.