Rroxscaffold_1G00058910

VWA domain containing CoxE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000360
Physical Location & Seq
Reverse (-)
80871904 .. 80878764
6861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058910.1

Sequence Viewer

Length: 927 bp
ATGAGCAAACGGGGAATTCCCCCGCCCTCGCCCCCGAGCCCAAATTCCCCGGGCCCCCGTTCTCCGTCCGGGGATATTTTCAGATGGGGATTCCCCGCCCCGCCCCAGCTGAACAATTGTGGCATTTGTCTGAGTAGCATGGCAACCCCGAAAGGCCAAGCCATCTTCACTGCCCAATGCTCACACTCCTTCCACTATCCTTGCATTGTCCAGAATGTTCAGCATGGAAATCTTAGTTGCCCCATTTGCCGAGCAATATGGGATAAGCATAATGTTCCTTTCCAACCAAACAGCTGGACTACTTCCCCCTCTCAACATAACAACTCAGGTGATCCCCCTCACCCATGGGGTGTTTTCCCTCAGCAAAACAACTTGGGTGGGAACTCTCCCAACATCTCATTCTCATTCCAGCCGCAACAGCCACCCCATCAGACTTATCATCAGTACTCGTATCAGCAACCCAGTTGGAATTATCCTTCCTTCCCATTTGTGCAGCAACCCCAGGCCCCTCCCCAGCCACCTAGCTTCTCTGATGATGAACCTCTTTTGTCCCCCTCACCCATGCAATCCAATGACCCCCAGGGTATAACAATTAAGACTCAGACCGAGTCCTTGGCTATCTCTGCTGCAGAATCTCATCCACGATATCCTGTTCTTGTCAGCATTTGCGCACCATCTCTTCAAGATACCGATGGCCATGGGAGTACCCCGGTCGACCTTGTGACAGTTCTGGATGTAAGTGGCAGCATGTGTGGCCTAAAGCTTGACCTTGTGAAGCGCGCTGTCAAATTTATCATACAAAACTTGGGGCCTTCAGACCGCCTTTCAATAGTTACATTCTCAACAACTGCTAGAAGAGTCTTTCCTCTCAGAAGAATGTCTGTTGAAGGCCGTGAAAAGTGCTGTGCGAGCTGTCAATTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

308

Amino Acids

33.71

Weight (kDa)

8.3

Isoelectric Point (pI)

70.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 38 - 84 6.7e-08 Ring finger domain
zf-RING_11 PF17123 39 - 69 5.7e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 40 - 83 2.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 40 - 83 1.4e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 40 - 81 8.1e-06 RING-type zinc-finger
VWA PF00092 239 - 294 8.9e-10 von Willebrand factor type A domain
VWA_3 PF13768 239 - 290 2.1e-08 von Willebrand factor type A domain
VWA_2 PF13519 240 - 294 1.1e-08 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 670
AccI GTMKAC 1 cut(s) 714
AccII CGCG 1 cut(s) 780
AciI CCGC 5 cut(s) 23, 96, 101, 413, 820
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 1 cut(s) 694
AcsI RAATTY 3 cut(s) 15, 43, 788
AcuI CTGAAG 1 cut(s) 798
AfaI GTAC 2 cut(s) 446, 706
AgsI TTSAA 3 cut(s) 683, 828, 887
AjnI CCWGG 2 cut(s) 501, 579
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AluBI AGCT 5 cut(s) 109, 294, 525, 763, 912
AluI AGCT 5 cut(s) 109, 294, 525, 763, 912
AlwI GGATC 1 cut(s) 326
Ama87I CYCGRG 2 cut(s) 34, 49
AoxI GGCC 7 cut(s) 52, 154, 504, 694, 754, 809, 889
ApaI GGGCCC 1 cut(s) 56
ApeKI GCWGC 3 cut(s) 493, 626, 744
ApoI RAATTY 3 cut(s) 15, 43, 788
AspLEI GCGC 3 cut(s) 671, 780, 782
AspS9I GGNCC 4 cut(s) 52, 53, 505, 809
AsuC2I CCSGG 4 cut(s) 50, 51, 70, 710
AsuHPI GGTGA 3 cut(s) 332, 341, 549
AvaI CYCGRG 2 cut(s) 34, 49
BaeGI GKGCMC 1 cut(s) 56
BalI TGGCCA 1 cut(s) 696
BanII GRGCYC 2 cut(s) 41, 56
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 505, 613, 756
BccI CCATC 5 cut(s) 78, 170, 435, 682, 686
BceAI ACGGC 1 cut(s) 876
BciT130I CCWGG 2 cut(s) 503, 581
BcnI CCSGG 4 cut(s) 50, 51, 70, 710
BfaI CTAG 2 cut(s) 522, 852
BfmI CTRYAG 1 cut(s) 627
BisI GCNGC 4 cut(s) 413, 494, 627, 745
BlsI GCNGC 4 cut(s) 414, 495, 628, 746
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 6 cut(s) 50, 51, 70, 503, 581, 710
BmeT110I CYCGRG 2 cut(s) 34, 49
BmgT120I GGNCC 4 cut(s) 52, 53, 505, 809
BmiI GGNNCC 4 cut(s) 54, 55, 507, 810
BmrFI CCNGG 6 cut(s) 50, 51, 70, 503, 581, 710
BmrI ACTGGG 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 360
BpuMI CCSGG 4 cut(s) 50, 51, 70, 710
Bse1I ACTGG 1 cut(s) 462
BseBI CCWGG 2 cut(s) 503, 581
BseGI GGATG 2 cut(s) 637, 739
BseMII CTCAG 5 cut(s) 122, 339, 374, 614, 883
BseNI ACTGG 1 cut(s) 462
BsePI GCGCGC 1 cut(s) 778
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 3 cut(s) 505, 613, 756
BseYI CCCAGC 2 cut(s) 105, 513
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 1 cut(s) 780
Bsh1285I CGRYCG 1 cut(s) 714
BshFI GGCC 7 cut(s) 54, 156, 506, 696, 756, 811, 891
BsiEI CGRYCG 1 cut(s) 714
BsiHKCI CYCGRG 2 cut(s) 34, 49
BsiSI CCGG 3 cut(s) 50, 69, 710
BslFI GGGAC 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 535
BsnI GGCC 7 cut(s) 54, 156, 506, 696, 756, 811, 891
BsoBI CYCGRG 2 cut(s) 34, 49
Bsp120I GGGCCC 1 cut(s) 52
Bsp1286I GDGCHC 2 cut(s) 41, 56
Bsp143I GATC 1 cut(s) 331
Bsp19I CCATGG 2 cut(s) 344, 697
BspACI CCGC 5 cut(s) 23, 96, 101, 413, 820
BspANI GGCC 7 cut(s) 54, 156, 506, 696, 756, 811, 891
BspCNI CTCAG 5 cut(s) 123, 338, 373, 613, 882
BspFNI CGCG 1 cut(s) 780
BspLI GGNNCC 4 cut(s) 54, 55, 507, 810
BspMAI CTGCAG 1 cut(s) 631
BspPI GGATC 1 cut(s) 326
BsrI ACTGG 1 cut(s) 462
BssHII GCGCGC 1 cut(s) 778
BssMI GATC 1 cut(s) 331
BssT1I CCWWGG 3 cut(s) 344, 612, 697
Bst2UI CCWGG 2 cut(s) 503, 581
Bst4CI ACNGT 1 cut(s) 727
Bst6I CTCTTC 2 cut(s) 684, 850
BstC8I GCNNGC 2 cut(s) 780, 910
BstDEI CTNAG 7 cut(s) 131, 233, 325, 360, 600, 869, 924
BstDSI CCRYGG 2 cut(s) 344, 697
BstF5I GGATG 2 cut(s) 637, 739
BstFNI CGCG 1 cut(s) 780
BstHHI GCGC 3 cut(s) 671, 780, 782
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstMCI CGRYCG 1 cut(s) 714
BstMWI GCNNNNNNNGC 5 cut(s) 246, 418, 623, 753, 909
BstNI CCWGG 2 cut(s) 503, 581
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 6 cut(s) 48, 49, 68, 501, 579, 708
BstSFI CTRYAG 1 cut(s) 627
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 1 cut(s) 780
BstV1I GCAGC 3 cut(s) 505, 613, 756
BstXI CCANNNNNNTGG 1 cut(s) 294
BsuRI GGCC 7 cut(s) 54, 156, 506, 696, 756, 811, 891
BtgI CCRYGG 2 cut(s) 344, 697
BtsCI GGATG 2 cut(s) 637, 739
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 780, 910
CfoI GCGC 3 cut(s) 671, 780, 782
Cfr13I GGNCC 4 cut(s) 52, 53, 505, 809
Cfr9I CCCGGG 1 cut(s) 49
Csp6I GTAC 2 cut(s) 445, 705
CspCI CAANNNNNGTGG 4 cut(s) 182, 217, 358, 393
CviAII CATG 6 cut(s) 139, 224, 345, 562, 698, 748
CviQI GTAC 2 cut(s) 445, 705
DdeI CTNAG 7 cut(s) 131, 233, 325, 360, 600, 869, 924
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
EaeI YGGCCR 1 cut(s) 694
Eam1104I CTCTTC 2 cut(s) 684, 850
EarI CTCTTC 2 cut(s) 684, 850
Eco130I CCWWGG 3 cut(s) 344, 612, 697
Eco24I GRGCYC 2 cut(s) 41, 56
Eco32I GATATC 1 cut(s) 647
Eco57I CTGAAG 1 cut(s) 798
Eco88I CYCGRG 2 cut(s) 34, 49
EcoO109I RGGNCCY 3 cut(s) 53, 505, 809
EcoRI GAATTC 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 501, 579
EcoRV GATATC 1 cut(s) 647
EcoT14I CCWWGG 3 cut(s) 344, 612, 697
EcoT38I GRGCYC 2 cut(s) 41, 56
ErhI CCWWGG 3 cut(s) 344, 612, 697
FaeI CATG 6 cut(s) 142, 227, 348, 565, 701, 751
FaqI GGGAC 1 cut(s) 535
FatI CATG 6 cut(s) 138, 223, 344, 561, 697, 747
FauI CCCGC 3 cut(s) 30, 103, 108
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 4 cut(s) 413, 494, 627, 745
FokI GGATG 2 cut(s) 624, 746
FriOI GRGCYC 2 cut(s) 41, 56
Fsp4HI GCNGC 4 cut(s) 413, 494, 627, 745
FspBI CTAG 2 cut(s) 522, 852
FspI TGCGCA 1 cut(s) 670
GlaI GCGC 3 cut(s) 670, 779, 781
GluI GCNGC 4 cut(s) 413, 494, 627, 745
GsaI CCCAGC 2 cut(s) 109, 517
HaeIII GGCC 7 cut(s) 54, 156, 506, 696, 756, 811, 891
HapII CCGG 3 cut(s) 50, 69, 710
HhaI GCGC 3 cut(s) 671, 780, 782
Hin1II CATG 6 cut(s) 142, 227, 348, 565, 701, 751
Hin6I GCGC 3 cut(s) 669, 778, 780
HinP1I GCGC 3 cut(s) 669, 778, 780
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 5 cut(s) 90, 598, 608, 632, 858
HpaII CCGG 3 cut(s) 50, 69, 710
HphI GGTGA 3 cut(s) 332, 341, 549
Hpy166II GTNNAC 1 cut(s) 715
Hpy188I TCNGA 7 cut(s) 83, 132, 432, 532, 603, 817, 872
Hpy188III TCNNGA 3 cut(s) 211, 683, 731
Hpy8I GTNNAC 1 cut(s) 715
HpyAV CCTTC 5 cut(s) 199, 486, 490, 822, 881
HpyCH4III ACNGT 1 cut(s) 727
HpyCH4V TGCA 4 cut(s) 204, 493, 565, 629
HpyF10VI GCNNNNNNNGC 5 cut(s) 246, 418, 623, 753, 909
HpyF3I CTNAG 7 cut(s) 131, 233, 325, 360, 600, 869, 924
Hsp92II CATG 6 cut(s) 142, 227, 348, 565, 701, 751
HspAI GCGC 3 cut(s) 669, 778, 780
Kzo9I GATC 1 cut(s) 331
Lsp1109I GCAGC 3 cut(s) 505, 613, 756
MaeI CTAG 2 cut(s) 522, 852
MaeIII GTNAC 2 cut(s) 721, 832
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 4 cut(s) 157, 671, 867, 885
MfeI CAATTG 1 cut(s) 115
MhlI GDGCHC 2 cut(s) 41, 56
MlsI TGGCCA 1 cut(s) 696
MluCI AATT 7 cut(s) 15, 43, 115, 469, 591, 788, 917
MluNI TGGCCA 1 cut(s) 696
MlyI GAGTC 3 cut(s) 592, 617, 867
MmeI TCCRAC 2 cut(s) 307, 446
MnlI CCTC 8 cut(s) 37, 319, 348, 369, 519, 552, 565, 876
Mox20I TGGCCA 1 cut(s) 696
MscI TGGCCA 1 cut(s) 696
MseI TTAA 1 cut(s) 594
Msp20I TGGCCA 1 cut(s) 696
MspA1I CMGCKG 2 cut(s) 109, 294
MspI CCGG 3 cut(s) 50, 69, 710
MspR9I CCNGG 6 cut(s) 50, 51, 70, 503, 581, 710
MunI CAATTG 1 cut(s) 115
MvaI CCWGG 2 cut(s) 503, 581
MvnI CGCG 1 cut(s) 780
MwoI GCNNNNNNNGC 5 cut(s) 246, 418, 623, 753, 909
NciI CCSGG 4 cut(s) 50, 51, 70, 710
NcoI CCATGG 2 cut(s) 344, 697
NdeII GATC 1 cut(s) 331
NlaIII CATG 6 cut(s) 142, 227, 348, 565, 701, 751
NlaIV GGNNCC 4 cut(s) 54, 55, 507, 810
NmeAIII GCCGAG 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 721
NsbI TGCGCA 1 cut(s) 670
NspI RCATGY 1 cut(s) 751
PasI CCCWGGG 1 cut(s) 580
PauI GCGCGC 1 cut(s) 778
PfeI GAWTC 2 cut(s) 90, 632
PflFI GACNNNGTC 1 cut(s) 607
PkrI GCNGC 4 cut(s) 414, 495, 628, 746
PleI GAGTC 3 cut(s) 592, 616, 866
PpsI GAGTC 3 cut(s) 592, 616, 866
Psp6I CCWGG 2 cut(s) 501, 579
PspFI CCCAGC 2 cut(s) 105, 513
PspGI CCWGG 2 cut(s) 501, 579
PspN4I GGNNCC 4 cut(s) 54, 55, 507, 810
PspOMI GGGCCC 1 cut(s) 52
PspPI GGNCC 4 cut(s) 52, 53, 505, 809
PstI CTGCAG 1 cut(s) 631
PsyI GACNNNGTC 1 cut(s) 607
PteI GCGCGC 1 cut(s) 778
PvuII CAGCTG 2 cut(s) 109, 294
RsaI GTAC 2 cut(s) 446, 706
RsaNI GTAC 2 cut(s) 445, 705
SalI GTCGAC 1 cut(s) 713
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 4 cut(s) 413, 494, 627, 745
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 4 cut(s) 52, 53, 505, 809
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 3 cut(s) 592, 617, 867
ScrFI CCNGG 6 cut(s) 50, 51, 70, 503, 581, 710
SduI GDGCHC 2 cut(s) 41, 56
SfcI CTRYAG 1 cut(s) 627
SmaI CCCGGG 1 cut(s) 51
Sse9I AATT 7 cut(s) 15, 43, 115, 469, 591, 788, 917
SsiI CCGC 5 cut(s) 23, 96, 101, 413, 820
SspMI CTAG 2 cut(s) 522, 852
StyD4I CCNGG 6 cut(s) 48, 49, 68, 501, 579, 708
StyI CCWWGG 3 cut(s) 344, 612, 697
TaaI ACNGT 1 cut(s) 727
TaqI TCGA 1 cut(s) 714
TaqII GACCGA 1 cut(s) 620
TasI AATT 7 cut(s) 15, 43, 115, 469, 591, 788, 917
TatI WGTACW 1 cut(s) 444
TauI GCSGC 1 cut(s) 415
TfiI GAWTC 2 cut(s) 90, 632
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 3 cut(s) 493, 626, 744
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 1 cut(s) 552
TspGWI ACGGA 1 cut(s) 54
TspMI CCCGGG 1 cut(s) 49
TspRI CASTG 1 cut(s) 175
Tth111I GACNNNGTC 1 cut(s) 607
XapI RAATTY 3 cut(s) 15, 43, 788
XceI RCATGY 1 cut(s) 751
XmaI CCCGGG 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 714
XspI CTAG 2 cut(s) 522, 852
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.