Rorug05G0047600

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000360
Physical Location & Seq
Forward (+)
4150755 .. 4152925
2171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0047600.1

Sequence Viewer

Length: 228 bp
ATGCTTCAAGGAAGAAAGCAGTTAAAGGTCCTTGTGAAGAAGGTACAAGCTGCTCGTGATGAAATGCAATGGGGTGAAGAGGGCCCTCCTCCATTGCTCGTGAAAATCGCTCCAGATTTGTCTAAAGAAGATCTCGAAGATATTGCTGCAGTGGCCCTTGCCCTTCGCTTGGACGGATTGATTATATCAAACACAACTGTTTCAAGACCAGACAGAAGACTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA VWA_3 Vwaint zf-RING_11

Protein Analysis

75

Amino Acids

8.32

Weight (kDa)

7.89

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHO_dh PF01180 3 - 70 3.7e-10 Dihydroorotate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 2 cut(s) 8, 204
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
AoxI GGCC 2 cut(s) 82, 153
ApaI GGGCCC 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 50, 146
AspS9I GGNCC 4 cut(s) 28, 82, 83, 154
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 86
BauI CACGAG 2 cut(s) 54, 98
BbsI GAAGAC 1 cut(s) 223
BbvI GCAGC 2 cut(s) 37, 133
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BfmI CTRYAG 1 cut(s) 147
BglII AGATCT 1 cut(s) 130
BisI GCNGC 2 cut(s) 51, 147
BlsI GCNGC 2 cut(s) 52, 148
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 4 cut(s) 28, 82, 83, 154
BmiI GGNNCC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse3DI GCAATG 2 cut(s) 74, 92
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 2 cut(s) 74, 92
BseRI GAGGAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 2 cut(s) 37, 133
BshFI GGCC 2 cut(s) 84, 155
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 2 cut(s) 84, 155
Bsp120I GGGCCC 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 2 cut(s) 84, 155
BspLI GGNNCC 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 151
BsrDI GCAATG 2 cut(s) 74, 92
BssMI GATC 1 cut(s) 130
BssSI CACGAG 2 cut(s) 54, 98
Bst2BI CACGAG 2 cut(s) 54, 98
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 72
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 37, 133
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 2 cut(s) 84, 155
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
Cfr13I GGNCC 4 cut(s) 28, 82, 83, 154
Csp6I GTAC 1 cut(s) 44
CviJI RGCY 3 cut(s) 50, 84, 155
CviKI_1 RGCY 3 cut(s) 50, 84, 155
CviQI GTAC 1 cut(s) 44
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 28
EcoO109I RGGNCCY 3 cut(s) 28, 82, 83
EcoT38I GRGCYC 1 cut(s) 86
FaiI YATR 1 cut(s) 185
Fnu4HI GCNGC 2 cut(s) 51, 147
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 2 cut(s) 51, 147
GluI GCNGC 2 cut(s) 51, 147
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 2 cut(s) 84, 155
HinfI GANTC 1 cut(s) 219
HphI GGTGA 1 cut(s) 86
Hpy188III TCNNGA 5 cut(s) 56, 100, 113, 134, 204
HpyAV CCTTC 2 cut(s) 34, 173
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 67, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 2 cut(s) 126, 222
Lsp1109I GCAGC 2 cut(s) 37, 133
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 6 cut(s) 24, 49, 89, 140, 149, 228
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 86
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 3 cut(s) 73, 96, 99
MseI TTAA 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 84
PkrI GCNGC 2 cut(s) 52, 148
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 84
PspOMI GGGCCC 1 cut(s) 82
PspPI GGNCC 4 cut(s) 28, 82, 83, 154
PspPPI RGGWCCY 1 cut(s) 28
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 2 cut(s) 51, 147
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 4 cut(s) 28, 82, 83, 154
SchI GAGTC 1 cut(s) 213
SduI GDGCHC 1 cut(s) 86
SetI ASST 3 cut(s) 30, 45, 52
SfcI CTRYAG 1 cut(s) 147
SinI GGWCC 1 cut(s) 28
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 135
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 156
TseI GCWGC 2 cut(s) 50, 146
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.