Rorug05G0047400

VWA domain containing CoxE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000360
Physical Location & Seq
Forward (+)
4124537 .. 4126587
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0047400.1

Sequence Viewer

Length: 963 bp
ATGGGTAGTTACAGAGGCTTTGGAAGATTTGCCAATTATTTTCGTGAATTTGTTTTGTTGCTTGCATTTGTTTGCATTTTAGTCCCGAGAGCTCAGGGATGGAGCAAAGAGGGTCACACTATGACTTGCCGGATTGCACAGGCACTCCTAGAGCCTGAAGCTGCAGAAGCTGTTAAAAATTTACTACCTCATGATGTCAATGGCGATCTGTCGGCTCTGTGTGTGTGGCCTGACCAGATCAGGCACTGGTACAGATACCGGTGGACTAGCCCTCTTCACTTCATTGACACACCTGATAATGCTTGCAACTTTGAATACTCAAGAGATTGCCATGATGAACATGGTTCCAAGGACATGTGTGTTGCTGGTGCAGTCCAGAATTTCACATCGCAGCTTTCACACTACACAGAAGGAACATCTGACCGTCGATATAATATGACCGAGGCCTTGCTTTTCTTGTCACACTTTATGGGTGATCTCCATCAGCCAATGCATATTGGATTCACGACAGATAGAGGAGGAAACACAATAGACTTGCGGTGGTACAGGCACAAATCCAATCTCCACCATGTATGGGATCGAGAGATTTTACTTCAAGCTCTGCATGATTATTATGACAAGGACATGGAACTCCTCTTGCAAGACATACAGGGAAACATCACAGTTGGAGTCTGGTCTGATGATGTTACATCATGGGGACATTGTGATGATATCAGTTCTTGTATAAACAAGTATGCTACAGAAAGTATAAACATAGCTTGCAAATGGGGTTACAAGGGCGTTGAGTCCGGTGCTACTCTAACAGAGGATTACTTCCTCCCTCGGCTACCTATTGTGGAGAAGAGGATTGCCCAAGGTGGAGTCCGGTTGGCTGCTATCCTCAATCGTGCCTTCTCCTCTGAATCTGAAGCACAACCTGCTGATCATCACAAAAACAAAAGAGCATCACATTCACCCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

320

Amino Acids

36.61

Weight (kDa)

6.03

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1-P1_nuclease PF02265 34 - 298 1.6e-87 S1/P1 Nuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 925
AciI CCGC 1 cut(s) 538
AclWI GGATC 1 cut(s) 585
AcsI RAATTY 3 cut(s) 47, 178, 379
AcuI CTGAAG 2 cut(s) 177, 927
AfaI GTAC 2 cut(s) 251, 545
AfiI CCNNNNNNNGG 1 cut(s) 574
AflIII ACRYGT 1 cut(s) 354
AgeI ACCGGT 1 cut(s) 258
AgsI TTSAA 2 cut(s) 314, 596
AluBI AGCT 6 cut(s) 92, 161, 170, 394, 599, 758
AluI AGCT 6 cut(s) 92, 161, 170, 394, 599, 758
Alw21I GWGCWC 1 cut(s) 94
AlwI GGATC 1 cut(s) 585
AlwNI CAGNNNCTG 2 cut(s) 170, 246
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 2 cut(s) 227, 444
ApeKI GCWGC 3 cut(s) 161, 391, 872
ApoI RAATTY 3 cut(s) 47, 178, 379
AsiGI ACCGGT 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 485, 945
AvaI CYCGRG 1 cut(s) 85
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 3 cut(s) 148, 403, 859
BccI CCATC 2 cut(s) 93, 489
BclI TGATCA 1 cut(s) 922
BfaI CTAG 2 cut(s) 149, 267
BfmI CTRYAG 2 cut(s) 162, 738
BfuAI ACCTGC 1 cut(s) 925
BisI GCNGC 3 cut(s) 162, 392, 873
BlsI GCNGC 3 cut(s) 163, 393, 874
BmeT110I CYCGRG 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 346
BmsI GCATC 1 cut(s) 953
Bpu10I CCTNAGC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 304
BsaBI GATNNNNATC 1 cut(s) 480
BsaJI CCNNGG 4 cut(s) 348, 441, 821, 853
BsaWI WCCGGW 3 cut(s) 258, 788, 864
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 574
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 480
BseDI CCNNGG 4 cut(s) 348, 441, 821, 853
BseGI GGATG 1 cut(s) 104
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 1 cut(s) 574
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 3 cut(s) 531, 623, 886
BseXI GCAGC 3 cut(s) 148, 403, 859
BsgI GTGCAG 1 cut(s) 390
BshFI GGCC 2 cut(s) 229, 446
BshTI ACCGGT 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 4 cut(s) 130, 259, 789, 865
BslFI GGGAC 2 cut(s) 68, 711
BslI CCNNNNNNNGG 1 cut(s) 574
BsmFI GGGAC 2 cut(s) 68, 711
BsnI GGCC 2 cut(s) 229, 446
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 5 cut(s) 205, 237, 475, 577, 922
BspACI CCGC 1 cut(s) 538
BspANI GGCC 2 cut(s) 229, 446
BspCNI CTCAG 1 cut(s) 106
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 346
BspMAI CTGCAG 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 925
BspPI GGATC 1 cut(s) 585
BsrFI RCCGGY 1 cut(s) 258
BsrI ACTGG 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 4 cut(s) 348, 441, 821, 853
BssMI GATC 5 cut(s) 205, 237, 475, 577, 922
BssT1I CCWWGG 2 cut(s) 348, 853
Bst4CI ACNGT 2 cut(s) 425, 664
Bst6I CTCTTC 2 cut(s) 279, 836
BstAPI GCANNNNNTGC 1 cut(s) 917
BstC8I GCNNGC 3 cut(s) 63, 304, 760
BstDEI CTNAG 2 cut(s) 93, 960
BstF5I GGATG 1 cut(s) 104
BstKTI GATC 5 cut(s) 208, 240, 478, 580, 925
BstMBI GATC 5 cut(s) 205, 237, 475, 577, 922
BstMWI GCNNNNNNNGC 2 cut(s) 167, 917
BstNSI RCATGY 1 cut(s) 358
BstSFI CTRYAG 2 cut(s) 162, 738
BstV1I GCAGC 3 cut(s) 148, 403, 859
BsuRI GGCC 2 cut(s) 229, 446
BtgZI GCGATG 1 cut(s) 372
BtsCI GGATG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 244
BveI ACCTGC 1 cut(s) 925
Cac8I GCNNGC 3 cut(s) 63, 304, 760
CaiI CAGNNNCTG 2 cut(s) 170, 246
CciI TCATGA 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 258
Csp6I GTAC 2 cut(s) 250, 544
CspAI ACCGGT 1 cut(s) 258
CviAII CATG 8 cut(s) 191, 332, 341, 355, 569, 605, 625, 693
CviQI GTAC 2 cut(s) 250, 544
DdeI CTNAG 2 cut(s) 93, 960
DpnI GATC 5 cut(s) 207, 239, 477, 579, 924
DpnII GATC 5 cut(s) 205, 237, 475, 577, 922
Eam1104I CTCTTC 2 cut(s) 279, 836
EarI CTCTTC 2 cut(s) 279, 836
Ecl136II GAGCTC 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 348, 853
Eco147I AGGCCT 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 712
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 177, 927
Eco88I CYCGRG 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 92
EcoRV GATATC 1 cut(s) 712
EcoT14I CCWWGG 2 cut(s) 348, 853
EcoT22I ATGCAT 1 cut(s) 495
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 2 cut(s) 348, 853
FaeI CATG 8 cut(s) 194, 335, 344, 358, 572, 608, 628, 696
FaqI GGGAC 2 cut(s) 68, 711
FatI CATG 8 cut(s) 190, 331, 340, 354, 568, 604, 624, 692
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 3 cut(s) 162, 392, 873
FokI GGATG 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 3 cut(s) 162, 392, 873
FspBI CTAG 2 cut(s) 149, 267
GluI GCNGC 3 cut(s) 162, 392, 873
HaeIII GGCC 2 cut(s) 229, 446
HapII CCGG 4 cut(s) 130, 259, 789, 865
Hin1II CATG 8 cut(s) 194, 335, 344, 358, 572, 608, 628, 696
HinfI GANTC 5 cut(s) 501, 669, 785, 861, 902
HpaII CCGG 4 cut(s) 130, 259, 789, 865
HphI GGTGA 2 cut(s) 485, 945
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 4 cut(s) 421, 679, 901, 907
Hpy188III TCNNGA 7 cut(s) 44, 85, 191, 321, 376, 505, 581
Hpy8I GTNNAC 1 cut(s) 264
Hpy99I CGWCG 1 cut(s) 429
HpyAV CCTTC 2 cut(s) 404, 901
HpyCH4III ACNGT 2 cut(s) 425, 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 917
HpyF3I CTNAG 2 cut(s) 93, 960
Hsp92II CATG 8 cut(s) 194, 335, 344, 358, 572, 608, 628, 696
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 5 cut(s) 205, 237, 475, 577, 922
LmnI GCTCC 1 cut(s) 102
Lsp1109I GCAGC 3 cut(s) 148, 403, 859
LweI GCATC 1 cut(s) 953
MaeI CTAG 2 cut(s) 149, 267
MaeIII GTNAC 5 cut(s) 8, 113, 459, 685, 770
MalI GATC 5 cut(s) 207, 239, 477, 579, 924
MboI GATC 5 cut(s) 205, 237, 475, 577, 922
MboII GAAGA 3 cut(s) 36, 266, 853
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 4 cut(s) 34, 47, 178, 379
MlyI GAGTC 3 cut(s) 678, 794, 870
MmeI TCCRAC 1 cut(s) 646
Mph1103I ATGCAT 1 cut(s) 495
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 705
MspI CCGG 4 cut(s) 130, 259, 789, 865
MwoI GCNNNNNNNGC 2 cut(s) 167, 917
NdeII GATC 5 cut(s) 205, 237, 475, 577, 922
NlaIII CATG 8 cut(s) 194, 335, 344, 358, 572, 608, 628, 696
NlaIV GGNNCC 1 cut(s) 346
NmeAIII GCCGAG 1 cut(s) 802
NmuCI GTSAC 2 cut(s) 113, 459
NsiI ATGCAT 1 cut(s) 495
NspI RCATGY 1 cut(s) 358
PagI TCATGA 1 cut(s) 190
PceI AGGCCT 1 cut(s) 446
PciI ACATGT 1 cut(s) 354
PfeI GAWTC 2 cut(s) 501, 902
PinAI ACCGGT 1 cut(s) 258
PkrI GCNGC 3 cut(s) 163, 393, 874
PleI GAGTC 3 cut(s) 677, 793, 869
PpsI GAGTC 3 cut(s) 677, 793, 869
PscI ACATGT 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 346
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 2 cut(s) 170, 246
RsaI GTAC 2 cut(s) 251, 545
RsaNI GTAC 2 cut(s) 250, 544
RseI CAYNNNNRTG 1 cut(s) 705
SacI GAGCTC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 3 cut(s) 162, 392, 873
Sau3AI GATC 5 cut(s) 205, 237, 475, 577, 922
SchI GAGTC 3 cut(s) 678, 794, 870
SduI GDGCHC 1 cut(s) 94
SfaNI GCATC 1 cut(s) 953
SfcI CTRYAG 2 cut(s) 162, 738
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 4 cut(s) 34, 47, 178, 379
SseBI AGGCCT 1 cut(s) 446
SsiI CCGC 1 cut(s) 538
SspMI CTAG 2 cut(s) 149, 267
SstI GAGCTC 1 cut(s) 94
StuI AGGCCT 1 cut(s) 446
StyI CCWWGG 2 cut(s) 348, 853
TaaI ACNGT 2 cut(s) 425, 664
TaqI TCGA 2 cut(s) 427, 580
TaqII GACCGA 1 cut(s) 455
TasI AATT 4 cut(s) 34, 47, 178, 379
TfiI GAWTC 2 cut(s) 501, 902
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 2 cut(s) 113, 459
TseI GCWGC 3 cut(s) 161, 391, 872
Tsp45I GTSAC 2 cut(s) 113, 459
TspDTI ATGAA 2 cut(s) 271, 351
TspRI CASTG 1 cut(s) 251
XapI RAATTY 3 cut(s) 47, 178, 379
XceI RCATGY 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XspI CTAG 2 cut(s) 149, 267
Zsp2I ATGCAT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.