Rorug05G0047200

VWA domain containing CoxE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000360
Physical Location & Seq
Reverse (-)
4115615 .. 4118347
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0047200.1

Sequence Viewer

Length: 978 bp
ATGAAGGCGGTAGTGGTAACAACCCCCGGCGGACCGGAGGTCCTCCGAGTACAAGAAGTAGAAGACCCAGAAATCAAAGACGACGAGGTTCTTATCAAAGTCGAGGCCACCGCGCTGAACCGAGCCGACACTTTTCAGAGGAAGGGACTCTACCCACCACCTCCGGGGTCCAGTCAGTACCTCGGCCTCGAATGTTCTGGAACCATCGAGGCCGTCGGGAAACACGTGTCGAGATGGAAAGTGGGCGATCAGGTGTGTGCTTTACTTAGTGGAGGAGGGTATGCTGAGAAGGTGGCTGTTCCGGCGGGACAGGTTCTTCCGGTTCCACCTGGGATTTCTTTGAAGGATGCTGCGAGCTTTCCGGAGGTGGCGTGCACTGTCTGGTCCACCATTTTTATGATGAGCCGGCTATCTTCGGGCGAAACACTTTTGGTTCATGGGGGTTCCAGCGGAATCGGTACATTTGCTATTCAGATCGCTAAATACCGGGGAGTAAGGGTATTTGTCACAGCAGGTAGTGAGGAAAAGTTGGCAGCTTGTAAGGAGCTTGGGGCTGACGTGGGTATCAATTACAAGACGGAGGACTTTGTTACACGGGTAAAGGAAGAGACGGGCGGCAAAGGTGTTGATGTCATCTTGGATAGCATTGGGCAAGCCTATTTTAAACGTAACCTTGACAGCTTAGCTTTTGATGGGAGGCTTTTTGTCATTGGGACCCTGAGTGGTGCTGTCTCAGAAATAGATCTTCGTGTGGTGCTTTCAAAGCGCCTCACCATCCAAGCGGCTGGTTTGCGATACAGAAGTCCAGAAAACAAAGCGGTAATTGTTAGAGAGGTGGAGGAGAATGTGTGGCCTGCAATTGTGGCTGGCAAGGTGAAAACTGTTGTCTACAAGCGTTTCCCATTATCTGAAGCCGCTGAGGCTCACCAGCTAATGGAAACTAGCCAGCATATTGGAAAGATACTACTTTTTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

325

Amino Acids

34.9

Weight (kDa)

6.48

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 27 - 109 6e-18 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 151 - 266 1.2e-31 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 183 - 323 3.6e-25 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 503
AccB7I CCANNNNNTGG 1 cut(s) 934
AccI GTMKAC 1 cut(s) 888
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 9 cut(s) 8, 30, 111, 305, 450, 615, 782, 818, 915
AcuI CTGAAG 1 cut(s) 930
AcvI CACGTG 1 cut(s) 226
AfaI GTAC 3 cut(s) 51, 179, 460
AfiI CCNNNNNNNGG 2 cut(s) 164, 934
AflIII ACRYGT 2 cut(s) 223, 225
AgsI TTSAA 2 cut(s) 343, 762
AhdI GACNNNNNGTC 1 cut(s) 38
AjiI CACGTC 1 cut(s) 559
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 6 cut(s) 357, 536, 547, 681, 686, 931
AluI AGCT 6 cut(s) 357, 536, 547, 681, 686, 931
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 2 cut(s) 602, 736
Alw44I GTGCAC 1 cut(s) 373
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 4 cut(s) 105, 184, 210, 851
ApaLI GTGCAC 1 cut(s) 373
ApeKI GCWGC 2 cut(s) 350, 533
AspLEI GCGC 2 cut(s) 115, 768
AspS9I GGNCC 5 cut(s) 32, 40, 168, 384, 714
AsuC2I CCSGG 3 cut(s) 27, 165, 488
AsuHPI GGTGA 3 cut(s) 763, 886, 917
AvaII GGWCC 5 cut(s) 32, 40, 168, 384, 714
BaeGI GKGCMC 1 cut(s) 377
BaeI ACNNNNGTAYC 4 cut(s) 547, 580, 787, 820
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BbrPI CACGTG 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 377
BbvCI CCTCAGC 1 cut(s) 918
BbvI GCAGC 2 cut(s) 337, 545
BccI CCATC 4 cut(s) 212, 228, 686, 782
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 330
BcnI CCSGG 3 cut(s) 27, 165, 488
BcoDI GTCTC 2 cut(s) 602, 736
BfaI CTAG 1 cut(s) 942
BfoI RGCGCY 1 cut(s) 769
BfuAI ACCTGC 1 cut(s) 503
BglI GCCNNNNNGGC 1 cut(s) 920
BglII AGATCT 1 cut(s) 742
BisI GCNGC 5 cut(s) 351, 534, 616, 783, 915
BlpI GCTNAGC 1 cut(s) 682
BlsI GCNGC 5 cut(s) 352, 535, 617, 784, 916
Bme1390I CCNGG 4 cut(s) 27, 165, 330, 488
Bme18I GGWCC 5 cut(s) 32, 40, 168, 384, 714
BmeRI GACNNNNNGTC 1 cut(s) 38
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 5 cut(s) 32, 40, 168, 384, 714
BmiI GGNNCC 6 cut(s) 169, 202, 324, 445, 715, 716
BmrFI CCNGG 4 cut(s) 27, 165, 330, 488
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 918
Bpu1102I GCTNAGC 1 cut(s) 682
BpuMI CCSGG 3 cut(s) 27, 165, 488
BsaAI YACGTR 1 cut(s) 226
BsaJI CCNNGG 5 cut(s) 25, 164, 181, 329, 487
BsaWI WCCGGW 3 cut(s) 34, 319, 361
BsaXI ACNNNNNCTCC 6 cut(s) 356, 386, 483, 513, 833, 863
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 934
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 5 cut(s) 25, 164, 181, 329, 487
BseGI GGATG 2 cut(s) 352, 774
BseLI CCNNNNNNNGG 2 cut(s) 164, 934
BseMII CTCAG 4 cut(s) 276, 710, 747, 909
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 288, 854
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 2 cut(s) 337, 545
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 4 cut(s) 107, 186, 212, 853
BsiHKAI GWGCWC 1 cut(s) 377
BsiSI CCGG 8 cut(s) 27, 35, 164, 302, 320, 362, 406, 487
BslFI GGGAC 3 cut(s) 159, 321, 727
BslI CCNNNNNNNGG 2 cut(s) 164, 934
BsmAI GTCTC 2 cut(s) 602, 736
BsmBI CGTCTC 1 cut(s) 602
BsmFI GGGAC 3 cut(s) 159, 321, 727
BsnI GGCC 4 cut(s) 107, 186, 212, 853
Bsp1286I GDGCHC 1 cut(s) 377
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 3 cut(s) 247, 474, 742
Bsp1720I GCTNAGC 1 cut(s) 682
BspACI CCGC 9 cut(s) 8, 30, 111, 305, 450, 615, 782, 818, 915
BspANI GGCC 4 cut(s) 107, 186, 212, 853
BspCNI CTCAG 4 cut(s) 277, 711, 746, 910
BspEI TCCGGA 1 cut(s) 361
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 6 cut(s) 169, 202, 324, 445, 715, 716
BspMI ACCTGC 1 cut(s) 503
BsrFI RCCGGY 1 cut(s) 405
BsrI ACTGG 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 5 cut(s) 25, 164, 181, 329, 487
BssMI GATC 3 cut(s) 247, 474, 742
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 379, 883
Bst6I CTCTTC 1 cut(s) 600
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 7 cut(s) 355, 373, 407, 654, 855, 868, 947
BstDEI CTNAG 6 cut(s) 266, 285, 682, 719, 733, 918
BstF5I GGATG 2 cut(s) 352, 774
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 769
BstHHI GCGC 2 cut(s) 115, 768
BstKTI GATC 3 cut(s) 250, 477, 745
BstMAI GTCTC 2 cut(s) 602, 736
BstMBI GATC 3 cut(s) 247, 474, 742
BstMWI GCNNNNNNNGC 4 cut(s) 302, 763, 863, 920
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 4 cut(s) 25, 163, 328, 486
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 337, 545
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 742
BstXI CCANNNNNNTGG 2 cut(s) 785, 953
BstYI RGATCY 1 cut(s) 742
BsuRI GGCC 4 cut(s) 107, 186, 212, 853
BtrI CACGTC 1 cut(s) 559
BtsCI GGATG 2 cut(s) 352, 774
BtsIMutI CAGTG 1 cut(s) 375
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 7 cut(s) 355, 373, 407, 654, 855, 868, 947
CfoI GCGC 2 cut(s) 115, 768
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 5 cut(s) 32, 40, 168, 384, 714
CpoI CGGWCCG 1 cut(s) 32
Csp6I GTAC 3 cut(s) 50, 178, 459
CspI CGGWCCG 1 cut(s) 32
CviAII CATG 1 cut(s) 437
CviQI GTAC 3 cut(s) 50, 178, 459
DdeI CTNAG 6 cut(s) 266, 285, 682, 719, 733, 918
DpnI GATC 3 cut(s) 249, 476, 744
DpnII GATC 3 cut(s) 247, 474, 742
DraI TTTAAA 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 600
Eam1105I GACNNNNNGTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 600
EciI GGCGGA 1 cut(s) 45
Eco47I GGWCC 5 cut(s) 32, 40, 168, 384, 714
Eco57I CTGAAG 1 cut(s) 930
Eco72I CACGTG 1 cut(s) 226
EcoO109I RGGNCCY 2 cut(s) 40, 714
EcoRII CCWGG 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 602
FaeI CATG 1 cut(s) 440
FaiI YATR 4 cut(s) 282, 398, 438, 951
FaqI GGGAC 3 cut(s) 159, 321, 727
FatI CATG 1 cut(s) 436
FauI CCCGC 1 cut(s) 298
FblI GTMKAC 1 cut(s) 888
Fnu4HI GCNGC 5 cut(s) 351, 534, 616, 783, 915
FokI GGATG 2 cut(s) 359, 761
Fsp4HI GCNGC 5 cut(s) 351, 534, 616, 783, 915
FspBI CTAG 1 cut(s) 942
GlaI GCGC 2 cut(s) 114, 767
GluI GCNGC 5 cut(s) 351, 534, 616, 783, 915
HaeII RGCGCY 1 cut(s) 769
HaeIII GGCC 4 cut(s) 107, 186, 212, 853
HapII CCGG 8 cut(s) 27, 35, 164, 302, 320, 362, 406, 487
HhaI GCGC 2 cut(s) 115, 768
Hin1II CATG 1 cut(s) 440
Hin6I GCGC 2 cut(s) 113, 766
HinP1I GCGC 2 cut(s) 113, 766
HinfI GANTC 2 cut(s) 147, 453
HpaII CCGG 8 cut(s) 27, 35, 164, 302, 320, 362, 406, 487
HphI GGTGA 3 cut(s) 763, 886, 917
Hpy166II GTNNAC 3 cut(s) 375, 387, 889
Hpy188I TCNGA 5 cut(s) 47, 138, 474, 736, 910
Hpy188III TCNNGA 5 cut(s) 198, 217, 231, 362, 806
Hpy8I GTNNAC 3 cut(s) 375, 387, 889
Hpy99I CGWCG 2 cut(s) 86, 218
HpyAV CCTTC 3 cut(s) 136, 283, 337
HpyCH4III ACNGT 2 cut(s) 379, 883
HpyCH4IV ACGT 3 cut(s) 225, 558, 667
HpyCH4V TGCA 2 cut(s) 375, 857
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 763, 863, 920
HpyF3I CTNAG 6 cut(s) 266, 285, 682, 719, 733, 918
HpySE526I ACGT 3 cut(s) 225, 558, 667
Hsp92II CATG 1 cut(s) 440
HspAI GCGC 2 cut(s) 113, 766
KflI GGGWCCC 1 cut(s) 714
Kpn2I TCCGGA 1 cut(s) 361
KroI GCCGGC 1 cut(s) 405
KroNI GCCGGC 1 cut(s) 407
Kzo9I GATC 3 cut(s) 247, 474, 742
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 2 cut(s) 337, 545
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 942
MaeII ACGT 3 cut(s) 225, 558, 667
MaeIII GTNAC 4 cut(s) 16, 505, 589, 668
MalI GATC 3 cut(s) 249, 476, 744
MboI GATC 3 cut(s) 247, 474, 742
MboII GAAGA 5 cut(s) 74, 308, 405, 617, 737
MfeI CAATTG 1 cut(s) 858
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 3 cut(s) 568, 822, 858
MlyI GAGTC 1 cut(s) 141
MroI TCCGGA 1 cut(s) 361
MroNI GCCGGC 1 cut(s) 405
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 2 cut(s) 450, 917
MspI CCGG 8 cut(s) 27, 35, 164, 302, 320, 362, 406, 487
MspR9I CCNGG 4 cut(s) 27, 165, 330, 488
MunI CAATTG 1 cut(s) 858
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 4 cut(s) 302, 763, 863, 920
NaeI GCCGGC 1 cut(s) 407
NciI CCSGG 3 cut(s) 27, 165, 488
NdeII GATC 3 cut(s) 247, 474, 742
NgoMIV GCCGGC 1 cut(s) 405
NlaIII CATG 1 cut(s) 440
NlaIV GGNNCC 6 cut(s) 169, 202, 324, 445, 715, 716
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 453
PflMI CCANNNNNTGG 1 cut(s) 934
PkrI GCNGC 5 cut(s) 352, 535, 617, 784, 916
PleI GAGTC 1 cut(s) 141
PmaCI CACGTG 1 cut(s) 226
PmlI CACGTG 1 cut(s) 226
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 226
PpuMI RGGWCCY 2 cut(s) 40, 714
Psp5II RGGWCCY 2 cut(s) 40, 714
Psp6I CCWGG 1 cut(s) 328
PspCI CACGTG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 6 cut(s) 169, 202, 324, 445, 715, 716
PspPI GGNCC 5 cut(s) 32, 40, 168, 384, 714
PspPPI RGGWCCY 2 cut(s) 40, 714
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 3 cut(s) 51, 179, 460
RsaNI GTAC 3 cut(s) 50, 178, 459
RseI CAYNNNNRTG 1 cut(s) 395
Rsr2I CGGWCCG 1 cut(s) 32
RsrII CGGWCCG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 5 cut(s) 351, 534, 616, 783, 915
Sau3AI GATC 3 cut(s) 247, 474, 742
Sau96I GGNCC 5 cut(s) 32, 40, 168, 384, 714
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 4 cut(s) 27, 165, 330, 488
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 5 cut(s) 32, 40, 168, 384, 714
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 3 cut(s) 568, 822, 858
SsiI CCGC 9 cut(s) 8, 30, 111, 305, 450, 615, 782, 818, 915
SspMI CTAG 1 cut(s) 942
StyD4I CCNGG 4 cut(s) 25, 163, 328, 486
TaaI ACNGT 2 cut(s) 379, 883
TaiI ACGT 3 cut(s) 228, 561, 670
TaqI TCGA 4 cut(s) 102, 189, 207, 230
TasI AATT 3 cut(s) 568, 822, 858
TatI WGTACW 1 cut(s) 49
TauI GCSGC 3 cut(s) 618, 785, 917
TfiI GAWTC 1 cut(s) 453
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 2 cut(s) 350, 533
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 2 cut(s) 17, 425
TspGWI ACGGA 2 cut(s) 593, 963
TspRI CASTG 1 cut(s) 382
Van91I CCANNNNNTGG 1 cut(s) 934
VneI GTGCAC 1 cut(s) 373
VpaK11BI GGWCC 5 cut(s) 32, 40, 168, 384, 714
XmiI GTMKAC 1 cut(s) 888
XspI CTAG 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.