FvH4_3g11780

pre-mRNA 3'-splice site binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000360
Physical Location & Seq
Forward (+)
6958588 .. 6962066
3479 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11780.t1

Sequence Viewer

Length: 2055 bp
ATGGCTACTGCATCTGTTCAAGGTTCTGCTGCTGGTGGGCTTGAGGTTCCTGATCAAGTTTTTCTTGGTGGGTTACCATATTACTTTAAGGAAGAACAGATCAGAGAGTTGCTTGAGTCCTTTGGACCCCTTCGCAGTTTTCAGCTAGTGACAGATTTAAGTACACGAATCGACAAAAAGGCTGCCTATTTTGTGTACCAGGATGTTTTGGTTACAGACATTGCTTGTGCAGCTCTGAATGGGATTCAAATGGGTGCCGATACACTGATTGTTAGGCGTGCTAATCATGGTACTGCCAACGAGCAGCCGCAGCCATGTTCTAATCCGCAAGAAAGTTGCGGTATTTGCTGGCGTAGCCTGATGATTGGGCAAGGCCGAGCCATCTTCATTGCTGAATGCTCCCATCGTTTCCACTACCCTTGTATTGCCAACAATGTCCAGTATGGAAATCTTCACTGCCCTGTCTGCAGAGCAAAATGGGACAAGACTAATGTACCTTTCCAAGTTTCTCCTCCTAAACGGACCAGGACATCTGTCGTGTCCCCAATGCTGCAGCAACTCCAACATTGGAATTATCCTCACTATCCTGAGTATTCATTTGAGCAGCAACAGCAGGACCCTCCTGAGCCACTTACCTTCGCTGATGATGAACCTCTCCACTCATCGACCTCACCTGTTCAATCCTCTGCCCACCAGAATCTGACAGTTAAGACATATACAGAGTGCTCTGCTATCTCTGCTGCAGAATCTAACTCAAAGTTTCCTGTCCTTGTTAGCATCCGTGCACCACCCCTTAAGGACTGTGAGCGCCATGGTCGTACGCCCATTGACCTTGTAACAGTTCTGGATGTAAGAGCCAGCATGCAAGGCATCAAGCTTAACCTTGTCAAGCGTGCTGTCAAATTTGTCATAGAAAACTTGGGGCCTTTGGACAGACTTTCTATTGTCTCATTCTCATCAACTTCTAAGAGAGTTCTTCCTCTCCAAAGGATGACTGCTGATGGCCGTGAAAGTGCCATACTAGCCGTCGACTCACTTAAAACAGGTCGTGGAGCTGGCATTGCTGAAGCACTCAAGAAAGGATTTAAGGTCCTTGAAGATCGAAGGGAAAAGAACCCAGTTGCTAGCATCATCCTCTTATCCGACGGCAAAGATAGCTACTGTCGAAGCCAAAGCCAAATGTTGAACCAAATGCTCGCTTCAATTTGTGCTAGTGACATTCAACATGAAATCCCAGTCCACACATTTGGATTTGGCAAGAAGCATGATGCAAACATTATGCATGCTATTTCTGATGCATCTGGGGGCACCTTTTCATGCATTGAATCAGTTGGCATGATACAAAATGGTTTTGCTTTGTGCATTGGTGGTCTTCTCAATGTTGTGGCTCAGGAACTTCGCCTCACAGTAAGGTCAGCATCATGTGCGGTGAAGATTGTTTCAATACCATCAGGGAGACATGTCAGCCAGATTTCTGATGAGGGCCAGCAAGGTGTTGTTGATATTGGAAACATATATGCAGAAGAGGAGAAACAGTTTCTGGTCTACCTATCAGTTCTACCCTCGGCTTCACATGTTAAGATGCCATTGTTAGATGTGACATGCGTGTACAAAGATCTTGCTTCAAATGAGTTGATGCAGGTGCAAGGTGAGAGAGTACATATACTGAGACCTGAGGTTTGTTCCCCTGCAGAAAAGGAAGTGTCTTTGGAGGTTGATCGACAGCGGAACAGAATTGGGGTGGCTGAATCTATTGCAGAGGCACAAAGGTTGGCTGAGATGGGAAATCTGGAAGGTGCACGGGCGCTTTTGGCTGAACGAAGAGCAACTGTCCTAGCATCACAAGCAGCTCAAGCTGGGGATGGTCTTACTTTTTCGTTTGAAACTGAGCTTAAAGAAGTCATGGATAGAATGGCTTCTATGAACTTGTACACCTATGCAGGGATGAGCTCTCATTCTCAACAGAGGGCTACAGCTAGGGGTGCCAATGTCCCCAAGATCAAGTATGAGACTCTCGATGCGGCTTACCAAGCTATGGAACATTTCTTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
HA2 Helicase_C OB_NTP_bind RRM_1 S1

Protein Analysis

685

Amino Acids

75.13

Weight (kDa)

6.43

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 20 - 85 5.3e-08 RNA recognition motif
zf-RING_2 PF13639 112 - 157 1.3e-06 Ring finger domain
zf-RING_11 PF17123 113 - 142 4.9e-08 RING-like zinc finger
VWA PF00092 277 - 435 2.1e-16 von Willebrand factor type A domain
VWA_3 PF13768 277 - 440 3.1e-14 von Willebrand factor type A domain
VWA_2 PF13519 278 - 384 2.7e-12 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1630
Acc36I ACCTGC 1 cut(s) 1630
AccB1I GGYRCC 3 cut(s) 254, 1307, 1982
AccB7I CCANNNNNTGG 1 cut(s) 2035
AccI GTMKAC 2 cut(s) 1029, 1545
AciI CCGC 6 cut(s) 308, 326, 339, 1427, 1726, 2021
AcoI YGGCCR 1 cut(s) 1003
AcsI RAATTY 1 cut(s) 902
AcuI CTGAAG 1 cut(s) 1086
AfaI GTAC 8 cut(s) 163, 197, 292, 495, 820, 1610, 1659, 1931
AfiI CCNNNNNNNGG 2 cut(s) 1941, 2035
AflII CTTAAG 1 cut(s) 794
AflIII ACRYGT 2 cut(s) 1459, 1573
AjnI CCWGG 2 cut(s) 198, 524
Alw21I GWGCWC 4 cut(s) 728, 787, 1801, 1952
Alw26I GTCTC 4 cut(s) 952, 1450, 1663, 2003
Alw44I GTGCAC 2 cut(s) 783, 1797
AlwNI CAGNNNCTG 2 cut(s) 700, 1540
AoxI GGCC 4 cut(s) 373, 923, 1003, 1483
ApaLI GTGCAC 2 cut(s) 783, 1797
ApoI RAATTY 1 cut(s) 902
ArsI GACNNNNNNTTYG 2 cut(s) 1662, 1694
Asp700I GAANNNNTTC 1 cut(s) 1915
AspLEI GCGC 2 cut(s) 810, 1807
AspS9I GGNCC 6 cut(s) 125, 522, 616, 923, 1090, 1483
AsuHPI GGTGA 3 cut(s) 663, 1441, 1661
AsuNHI GCTAGC 1 cut(s) 1124
AvaII GGWCC 4 cut(s) 125, 522, 616, 1090
AxyI CCTNAGG 1 cut(s) 1674
BaeGI GKGCMC 3 cut(s) 787, 1310, 1801
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BanI GGYRCC 3 cut(s) 254, 1307, 1982
BanII GRGCYC 1 cut(s) 1952
BbsI GAAGAC 1 cut(s) 1364
Bbv12I GWGCWC 4 cut(s) 728, 787, 1801, 1952
BccI CCATC 6 cut(s) 389, 411, 995, 1456, 1774, 1856
BceAI ACGGC 3 cut(s) 990, 1010, 1162
BciT130I CCWGG 2 cut(s) 200, 526
BclI TGATCA 1 cut(s) 52
BcoDI GTCTC 4 cut(s) 952, 1450, 1663, 2003
BfaI CTAG 6 cut(s) 146, 1022, 1125, 1212, 1835, 1977
BfmI CTRYAG 5 cut(s) 466, 551, 741, 1689, 1971
BfoI RGCGCY 2 cut(s) 811, 1808
BfrI CTTAAG 1 cut(s) 794
BfuAI ACCTGC 1 cut(s) 1630
BglII AGATCT 1 cut(s) 1615
Bme1390I CCNGG 2 cut(s) 200, 526
Bme18I GGWCC 4 cut(s) 125, 522, 616, 1090
BmgT120I GGNCC 6 cut(s) 125, 522, 616, 923, 1090, 1483
BmiI GGNNCC 7 cut(s) 48, 127, 256, 618, 924, 1309, 1984
BmrFI CCNGG 2 cut(s) 200, 526
BmrI ACTGGG 2 cut(s) 1112, 1229
BmtI GCTAGC 1 cut(s) 1128
BmuI ACTGGG 2 cut(s) 1112, 1229
BoxI GACNNNNGTC 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 1364
Bpu10I CCTNAGC 2 cut(s) 624, 1389
BpuEI CTTGAG 4 cut(s) 62, 134, 1058, 1836
BsaI GGTCTC 1 cut(s) 1663
BsaJI CCNNGG 2 cut(s) 811, 1563
BsaXI ACNNNNNCTCC 2 cut(s) 1520, 1550
Bsc4I CCNNNNNNNGG 2 cut(s) 1941, 2035
Bse1I ACTGG 3 cut(s) 439, 1118, 1235
Bse21I CCTNAGG 1 cut(s) 1674
Bse3DI GCAATG 3 cut(s) 219, 387, 1059
BseBI CCWGG 2 cut(s) 200, 526
BseDI CCNNGG 2 cut(s) 811, 1563
BseGI GGATG 7 cut(s) 208, 777, 853, 996, 1131, 1867, 1950
BseLI CCNNNNNNNGG 2 cut(s) 1941, 2035
BseMI GCAATG 3 cut(s) 219, 387, 1059
BseMII CTCAG 7 cut(s) 579, 615, 1403, 1658, 1665, 1767, 1878
BseNI ACTGG 3 cut(s) 439, 1118, 1235
BseRI GAGGAG 2 cut(s) 501, 1541
BseSI GKGCMC 3 cut(s) 787, 1310, 1801
BseYI CCCAGC 1 cut(s) 1856
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 4 cut(s) 375, 925, 1005, 1485
BshNI GGYRCC 3 cut(s) 254, 1307, 1982
BsiHKAI GWGCWC 4 cut(s) 728, 787, 1801, 1952
BsiWI CGTACG 1 cut(s) 818
BslFI GGGAC 3 cut(s) 494, 526, 1976
BslI CCNNNNNNNGG 2 cut(s) 1941, 2035
BsmAI GTCTC 4 cut(s) 952, 1450, 1663, 2003
BsmFI GGGAC 3 cut(s) 494, 526, 1976
BsmI GAATGC 1 cut(s) 401
BsnI GGCC 4 cut(s) 375, 925, 1005, 1485
Bso31I GGTCTC 1 cut(s) 1663
Bsp1286I GDGCHC 5 cut(s) 728, 787, 1310, 1801, 1952
Bsp1407I TGTACA 2 cut(s) 1608, 1929
Bsp143I GATC 6 cut(s) 52, 99, 1099, 1615, 1717, 1998
Bsp19I CCATGG 1 cut(s) 811
BspACI CCGC 6 cut(s) 308, 326, 339, 1427, 1726, 2021
BspANI GGCC 4 cut(s) 375, 925, 1005, 1485
BspCNI CTCAG 7 cut(s) 580, 616, 1402, 1659, 1666, 1768, 1879
BspHI TCATGA 1 cut(s) 2051
BspLI GGNNCC 7 cut(s) 48, 127, 256, 618, 924, 1309, 1984
BspMAI CTGCAG 4 cut(s) 470, 555, 745, 1693
BspMI ACCTGC 1 cut(s) 1630
BspOI GCTAGC 1 cut(s) 1128
BspQI GCTCTTC 1 cut(s) 1816
BspT107I GGYRCC 3 cut(s) 254, 1307, 1982
BspTI CTTAAG 1 cut(s) 794
BspTNI GGTCTC 1 cut(s) 1663
BsrDI GCAATG 3 cut(s) 219, 387, 1059
BsrGI TGTACA 2 cut(s) 1608, 1929
BsrI ACTGG 3 cut(s) 439, 1118, 1235
BssECI CCNNGG 2 cut(s) 811, 1563
BssMI GATC 6 cut(s) 52, 99, 1099, 1615, 1717, 1998
BssT1I CCWWGG 1 cut(s) 811
Bst2UI CCWGG 2 cut(s) 200, 526
Bst4CI ACNGT 7 cut(s) 706, 803, 841, 1163, 1408, 1536, 1831
Bst6I CTCTTC 2 cut(s) 1518, 1816
BstAFI CTTAAG 1 cut(s) 794
BstAPI GCANNNNNTGC 1 cut(s) 1424
BstAUI TGTACA 2 cut(s) 1608, 1929
BstDEI CTNAG 8 cut(s) 588, 624, 966, 1389, 1667, 1674, 1776, 1887
BstDSI CCRYGG 1 cut(s) 811
BstEII GGTNACC 1 cut(s) 72
BstF5I GGATG 7 cut(s) 208, 777, 853, 996, 1131, 1867, 1950
BstH2I RGCGCY 2 cut(s) 811, 1808
BstHHI GCGC 2 cut(s) 810, 1807
BstKTI GATC 6 cut(s) 55, 102, 1102, 1618, 1720, 2001
BstMAI GTCTC 4 cut(s) 952, 1450, 1663, 2003
BstMBI GATC 6 cut(s) 52, 99, 1099, 1615, 1717, 1998
BstNI CCWGG 2 cut(s) 200, 526
BstNSI RCATGY 5 cut(s) 865, 1286, 1463, 1577, 1605
BstPAI GACNNNNGTC 1 cut(s) 533
BstPI GGTNACC 1 cut(s) 72
BstSCI CCNGG 2 cut(s) 198, 524
BstSFI CTRYAG 5 cut(s) 466, 551, 741, 1689, 1971
BstSLI GKGCMC 3 cut(s) 787, 1310, 1801
BstV2I GAAGAC 1 cut(s) 1364
BstX2I RGATCY 1 cut(s) 1615
BstXI CCANNNNNNTGG 1 cut(s) 1247
BstYI RGATCY 1 cut(s) 1615
Bsu36I CCTNAGG 1 cut(s) 1674
BsuRI GGCC 4 cut(s) 375, 925, 1005, 1485
BtgI CCRYGG 1 cut(s) 811
BtsCI GGATG 7 cut(s) 208, 777, 853, 996, 1131, 1867, 1950
BtsI GCAGTG 1 cut(s) 454
BtsIMutI CAGTG 2 cut(s) 263, 454
BveI ACCTGC 1 cut(s) 1630
CaiI CAGNNNCTG 2 cut(s) 700, 1540
CciI TCATGA 1 cut(s) 2051
CfoI GCGC 2 cut(s) 810, 1807
Cfr13I GGNCC 6 cut(s) 125, 522, 616, 923, 1090, 1483
Csp6I GTAC 8 cut(s) 162, 196, 291, 494, 819, 1609, 1658, 1930
CspCI CAANNNNNGTGG 2 cut(s) 401, 436
CviQI GTAC 8 cut(s) 162, 196, 291, 494, 819, 1609, 1658, 1930
DdeI CTNAG 8 cut(s) 588, 624, 966, 1389, 1667, 1674, 1776, 1887
DpnI GATC 6 cut(s) 54, 101, 1101, 1617, 1719, 2000
DpnII GATC 6 cut(s) 52, 99, 1099, 1615, 1717, 1998
EaeI YGGCCR 1 cut(s) 1003
Eam1104I CTCTTC 2 cut(s) 1518, 1816
EarI CTCTTC 2 cut(s) 1518, 1816
Ecl136II GAGCTC 1 cut(s) 1950
Eco130I CCWWGG 1 cut(s) 811
Eco24I GRGCYC 1 cut(s) 1952
Eco31I GGTCTC 1 cut(s) 1663
Eco47I GGWCC 4 cut(s) 125, 522, 616, 1090
Eco53kI GAGCTC 1 cut(s) 1950
Eco57I CTGAAG 1 cut(s) 1086
Eco81I CCTNAGG 1 cut(s) 1674
Eco91I GGTNACC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 1950
EcoO109I RGGNCCY 3 cut(s) 616, 923, 1090
EcoO65I GGTNACC 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 198, 524
EcoT14I CCWWGG 1 cut(s) 811
EcoT22I ATGCAT 3 cut(s) 1284, 1300, 1322
EcoT38I GRGCYC 1 cut(s) 1952
ErhI CCWWGG 1 cut(s) 811
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 3 cut(s) 494, 526, 1976
FbaI TGATCA 1 cut(s) 52
FblI GTMKAC 2 cut(s) 1029, 1545
FokI GGATG 7 cut(s) 215, 764, 860, 1003, 1118, 1874, 1957
FriOI GRGCYC 1 cut(s) 1952
FspBI CTAG 6 cut(s) 146, 1022, 1125, 1212, 1835, 1977
GlaI GCGC 2 cut(s) 809, 1806
GsaI CCCAGC 1 cut(s) 1860
HaeII RGCGCY 2 cut(s) 811, 1808
HaeIII GGCC 4 cut(s) 375, 925, 1005, 1485
HhaI GCGC 2 cut(s) 810, 1807
Hin6I GCGC 2 cut(s) 808, 1805
HinP1I GCGC 2 cut(s) 808, 1805
HincII GTYRAC 1 cut(s) 1030
HindII GTYRAC 1 cut(s) 1030
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 9 cut(s) 116, 168, 244, 697, 746, 1031, 1325, 1748, 2011
HphI GGTGA 3 cut(s) 663, 1441, 1661
Hpy166II GTNNAC 9 cut(s) 164, 196, 785, 1030, 1240, 1546, 1609, 1799, 1932
Hpy188I TCNGA 6 cut(s) 104, 237, 702, 1144, 1294, 1477
Hpy188III TCNNGA 9 cut(s) 50, 587, 623, 845, 1075, 1391, 1790, 2015, 2052
Hpy8I GTNNAC 9 cut(s) 164, 196, 785, 1030, 1240, 1546, 1609, 1799, 1932
Hpy99I CGWCG 2 cut(s) 1031, 1148
HpyAV CCTTC 4 cut(s) 140, 646, 1098, 1787
HpyCH4III ACNGT 7 cut(s) 706, 803, 841, 1163, 1408, 1536, 1831
HpyF3I CTNAG 8 cut(s) 588, 624, 966, 1389, 1667, 1674, 1776, 1887
HspAI GCGC 2 cut(s) 808, 1805
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 6 cut(s) 52, 99, 1099, 1615, 1717, 1998
LguI GCTCTTC 1 cut(s) 1816
LmnI GCTCC 2 cut(s) 404, 1052
MaeI CTAG 6 cut(s) 146, 1022, 1125, 1212, 1835, 1977
MaeIII GTNAC 6 cut(s) 72, 148, 211, 835, 1214, 1597
MalI GATC 6 cut(s) 54, 101, 1101, 1617, 1719, 2000
MboI GATC 6 cut(s) 52, 99, 1099, 1615, 1717, 1998
MflI RGATCY 1 cut(s) 1615
MhlI GDGCHC 5 cut(s) 728, 787, 1310, 1801, 1952
MluCI AATT 4 cut(s) 571, 902, 1203, 1734
MlyI GAGTC 3 cut(s) 125, 1025, 2005
MmeI TCCRAC 2 cut(s) 586, 1167
Mph1103I ATGCAT 3 cut(s) 1284, 1300, 1322
MroXI GAANNNNTTC 1 cut(s) 1915
MseI TTAA 9 cut(s) 87, 158, 708, 795, 879, 1038, 1086, 1578, 1893
MspA1I CMGCKG 1 cut(s) 1726
MspCI CTTAAG 1 cut(s) 794
MspR9I CCNGG 2 cut(s) 200, 526
Mva1269I GAATGC 1 cut(s) 401
MvaI CCWGG 2 cut(s) 200, 526
NcoI CCATGG 1 cut(s) 811
NdeII GATC 6 cut(s) 52, 99, 1099, 1615, 1717, 1998
NheI GCTAGC 1 cut(s) 1124
NlaIV GGNNCC 7 cut(s) 48, 127, 256, 618, 924, 1309, 1984
NmeAIII GCCGAG 2 cut(s) 401, 1544
NmuCI GTSAC 3 cut(s) 148, 1214, 1597
NsiI ATGCAT 3 cut(s) 1284, 1300, 1322
NspI RCATGY 5 cut(s) 865, 1286, 1463, 1577, 1605
PaeI GCATGC 2 cut(s) 865, 1286
PagI TCATGA 1 cut(s) 2051
PaqCI CACCTGC 1 cut(s) 1630
PciI ACATGT 2 cut(s) 1459, 1573
PciSI GCTCTTC 1 cut(s) 1816
PctI GAATGC 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 1915
PfeI GAWTC 6 cut(s) 168, 244, 697, 746, 1325, 1748
Pfl23II CGTACG 1 cut(s) 818
PflMI CCANNNNNTGG 1 cut(s) 2035
PleI GAGTC 3 cut(s) 124, 1025, 2005
PpsI GAGTC 3 cut(s) 124, 1025, 2005
PpuMI RGGWCCY 2 cut(s) 616, 1090
PscI ACATGT 2 cut(s) 1459, 1573
PshAI GACNNNNGTC 1 cut(s) 533
Psp124BI GAGCTC 1 cut(s) 1952
Psp5II RGGWCCY 2 cut(s) 616, 1090
Psp6I CCWGG 2 cut(s) 198, 524
PspEI GGTNACC 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 1856
PspGI CCWGG 2 cut(s) 198, 524
PspLI CGTACG 1 cut(s) 818
PspN4I GGNNCC 7 cut(s) 48, 127, 256, 618, 924, 1309, 1984
PspPI GGNCC 6 cut(s) 125, 522, 616, 923, 1090, 1483
PspPPI RGGWCCY 2 cut(s) 616, 1090
PstI CTGCAG 4 cut(s) 470, 555, 745, 1693
PstNI CAGNNNCTG 2 cut(s) 700, 1540
PsuI RGATCY 1 cut(s) 1615
RsaI GTAC 8 cut(s) 163, 197, 292, 495, 820, 1610, 1659, 1931
RsaNI GTAC 8 cut(s) 162, 196, 291, 494, 819, 1609, 1658, 1930
SacI GAGCTC 1 cut(s) 1952
SalI GTCGAC 1 cut(s) 1028
SapI GCTCTTC 1 cut(s) 1816
SaqAI TTAA 9 cut(s) 87, 158, 708, 795, 879, 1038, 1086, 1578, 1893
Sau3AI GATC 6 cut(s) 52, 99, 1099, 1615, 1717, 1998
Sau96I GGNCC 6 cut(s) 125, 522, 616, 923, 1090, 1483
SchI GAGTC 3 cut(s) 125, 1025, 2005
ScrFI CCNGG 2 cut(s) 200, 526
SduI GDGCHC 5 cut(s) 728, 787, 1310, 1801, 1952
SfcI CTRYAG 5 cut(s) 466, 551, 741, 1689, 1971
SinI GGWCC 4 cut(s) 125, 522, 616, 1090
SmlI CTYRAG 5 cut(s) 41, 113, 794, 1073, 1851
SmoI CTYRAG 5 cut(s) 41, 113, 794, 1073, 1851
SphI GCATGC 2 cut(s) 865, 1286
Sse9I AATT 4 cut(s) 571, 902, 1203, 1734
SsiI CCGC 6 cut(s) 308, 326, 339, 1427, 1726, 2021
SspMI CTAG 6 cut(s) 146, 1022, 1125, 1212, 1835, 1977
SstI GAGCTC 1 cut(s) 1952
StyD4I CCNGG 2 cut(s) 198, 524
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 7 cut(s) 706, 803, 841, 1163, 1408, 1536, 1831
TaqI TCGA 7 cut(s) 171, 665, 1029, 1102, 1165, 1720, 2016
TasI AATT 4 cut(s) 571, 902, 1203, 1734
TatI WGTACW 4 cut(s) 161, 1608, 1657, 1929
TauI GCSGC 2 cut(s) 310, 2024
TfiI GAWTC 6 cut(s) 168, 244, 697, 746, 1325, 1748
Tru1I TTAA 9 cut(s) 87, 158, 708, 795, 879, 1038, 1086, 1578, 1893
Tru9I TTAA 9 cut(s) 87, 158, 708, 795, 879, 1038, 1086, 1578, 1893
TscAI CASTG 2 cut(s) 270, 461
TseFI GTSAC 3 cut(s) 148, 1214, 1597
Tsp45I GTSAC 3 cut(s) 148, 1214, 1597
TspDTI ATGAA 6 cut(s) 376, 585, 663, 1242, 1305, 1937
TspGWI ACGGA 2 cut(s) 535, 770
TspRI CASTG 2 cut(s) 270, 461
Van91I CCANNNNNTGG 1 cut(s) 2035
Vha464I CTTAAG 1 cut(s) 794
VneI GTGCAC 2 cut(s) 783, 1797
VpaK11BI GGWCC 4 cut(s) 125, 522, 616, 1090
XapI RAATTY 1 cut(s) 902
XceI RCATGY 5 cut(s) 865, 1286, 1463, 1577, 1605
XmiI GTMKAC 2 cut(s) 1029, 1545
XmnI GAANNNNTTC 1 cut(s) 1915
XspI CTAG 6 cut(s) 146, 1022, 1125, 1212, 1835, 1977
Zsp2I ATGCAT 3 cut(s) 1284, 1300, 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.