Rh5BG137800

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000360
Physical Location & Seq
Forward (+)
14139412 .. 14141007
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG137800.1

Sequence Viewer

Length: 858 bp
ATGTCGCGACAGTATAGTTTACGGTCTCAGGGTCCATCTTCTCATGGCAAGGCCAAGCCATCTTCACTGCTGAGTGCTCACACTCTTTCCAGTTTCCACTACCCTTGCATTGCCAACAATGTCCAGCATGGAAATCTTTGCTGCCCTGCCTGCAGAGCAAAATGGAATAAAAATAATTTACCTTTCCAAGTTCCCCCTCTTCAACAAAATAACAAGAGTAAACATGGCTTCGCCGATGATGAACCTCTCTCGTCCGCCACACTCCTCAAAACTTCTGGCCCCCAGAATGTAACAGTCAAGACTCATACAGAGACCTCTGCTATCTCTGCTGCCGAATCACGCCCCCATTATCCTGTTCTAGTTAGCATTTGTGCACCACCCCTTCAAGATCCCGATGGTGAAGGCCGTACACCCATTGACCTTGTTACAATTCTGGACGTAAGCGGTAGCATGCTTGGCCAAAAGCTTGAACTTGTCAAGCAAGCTGTCAAATTCGTCATTGAAAACATGGGGACTTCGGACAGACTGTCTATAGTATCATTCTCAACAACTTCTAAACGACTCCTTCCTCTCCGTAGAATGACTGTTAAGGGCCGTGAAAGTGCAATCCAAGCTGTCGAATCTCTTAGAGCAGATGGTGGAACTGACATTGCAGAAGGACTCAAGATAGGAACTCATATCCTTGAGGAGCGAAGGGAAAGGAACCCTGTTGCTAGCATCATCCTCTTATCGGATGGCCAAGATAGCTACTGTGACAACCCAAGCCAAATGTTGAAGAAATTGCCTGCTTCAATTCGTTCTAGTGACATGCAACATGAAATCCCAGTCCACACATTTGGGTTTGGCAACGACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

285

Amino Acids

31.04

Weight (kDa)

8.71

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_CoxE PF05762 136 - 254 2.1e-06 VWA domain containing CoxE-like protein
VWA PF00092 140 - 285 1.2e-19 von Willebrand factor type A domain
VWA_3 PF13768 140 - 284 1.1e-14 von Willebrand factor type A domain
VWA_2 PF13519 141 - 247 6.3e-19 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 7
AciI CCGC 2 cut(s) 255, 444
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 2 cut(s) 457, 736
AcsI RAATTY 1 cut(s) 491
AfaI GTAC 1 cut(s) 409
AfiI CCNNNNNNNGG 1 cut(s) 730
AgsI TTSAA 6 cut(s) 203, 386, 470, 503, 775, 792
AhdI GACNNNNNGTC 1 cut(s) 526
AluBI AGCT 4 cut(s) 466, 485, 614, 747
AluI AGCT 4 cut(s) 466, 485, 614, 747
Alw21I GWGCWC 2 cut(s) 79, 376
Alw26I GTCTC 2 cut(s) 30, 305
Alw44I GTGCAC 1 cut(s) 372
AlwI GGATC 1 cut(s) 383
AoxI GGCC 6 cut(s) 51, 277, 403, 457, 592, 736
ApaLI GTGCAC 1 cut(s) 372
ApeKI GCWGC 2 cut(s) 141, 329
ApoI RAATTY 1 cut(s) 491
AspS9I GGNCC 3 cut(s) 32, 278, 592
AsuHPI GGTGA 1 cut(s) 410
AsuNHI GCTAGC 1 cut(s) 713
AvaII GGWCC 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 376
BalI TGGCCA 2 cut(s) 459, 738
Bbv12I GWGCWC 2 cut(s) 79, 376
BbvI GCAGC 2 cut(s) 128, 316
BccI CCATC 5 cut(s) 43, 67, 389, 629, 728
BceAI ACGGC 2 cut(s) 390, 579
BcoDI GTCTC 2 cut(s) 30, 305
BfaI CTAG 3 cut(s) 359, 714, 801
BfmI CTRYAG 2 cut(s) 151, 531
BisI GCNGC 2 cut(s) 142, 330
BlsI GCNGC 2 cut(s) 143, 331
Bme18I GGWCC 1 cut(s) 32
BmeRI GACNNNNNGTC 1 cut(s) 526
BmgT120I GGNCC 3 cut(s) 32, 278, 592
BmiI GGNNCC 3 cut(s) 33, 280, 704
BmrI ACTGGG 1 cut(s) 818
BmsI GCATC 1 cut(s) 726
BmtI GCTAGC 1 cut(s) 717
BmuI ACTGGG 1 cut(s) 818
BpuEI CTTGAG 2 cut(s) 647, 704
BsaI GGTCTC 2 cut(s) 30, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 730
Bse1I ACTGG 2 cut(s) 90, 824
Bse3DI GCAATG 2 cut(s) 108, 648
BseGI GGATG 2 cut(s) 720, 739
BseLI CCNNNNNNNGG 1 cut(s) 730
BseMI GCAATG 2 cut(s) 108, 648
BseMII CTCAG 2 cut(s) 41, 62
BseNI ACTGG 2 cut(s) 90, 824
BseRI GAGGAG 2 cut(s) 254, 701
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 2 cut(s) 128, 316
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 6 cut(s) 53, 279, 405, 459, 594, 738
BsiHKAI GWGCWC 2 cut(s) 79, 376
BslFI GGGAC 1 cut(s) 526
BslI CCNNNNNNNGG 1 cut(s) 730
BsmAI GTCTC 2 cut(s) 30, 305
BsmFI GGGAC 1 cut(s) 526
BsnI GGCC 6 cut(s) 53, 279, 405, 459, 594, 738
Bso31I GGTCTC 2 cut(s) 30, 305
Bsp1286I GDGCHC 2 cut(s) 79, 376
Bsp143I GATC 1 cut(s) 388
Bsp68I TCGCGA 1 cut(s) 7
BspACI CCGC 2 cut(s) 255, 444
BspANI GGCC 6 cut(s) 53, 279, 405, 459, 594, 738
BspCNI CTCAG 2 cut(s) 40, 63
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 3 cut(s) 33, 280, 704
BspMAI CTGCAG 1 cut(s) 155
BspOI GCTAGC 1 cut(s) 717
BspPI GGATC 1 cut(s) 383
BspTNI GGTCTC 2 cut(s) 30, 305
BsrDI GCAATG 2 cut(s) 108, 648
BsrI ACTGG 2 cut(s) 90, 824
BssMI GATC 1 cut(s) 388
Bst4CI ACNGT 6 cut(s) 12, 24, 295, 528, 586, 752
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 5 cut(s) 151, 452, 483, 715, 786
BstDEI CTNAG 3 cut(s) 27, 71, 626
BstF5I GGATG 2 cut(s) 720, 739
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 1 cut(s) 391
BstMAI GTCTC 2 cut(s) 30, 305
BstMBI GATC 1 cut(s) 388
BstMWI GCNNNNNNNGC 6 cut(s) 150, 155, 326, 456, 611, 744
BstNSI RCATGY 2 cut(s) 454, 811
BstSFI CTRYAG 2 cut(s) 151, 531
BstSLI GKGCMC 1 cut(s) 376
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 128, 316
BstX2I RGATCY 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 836
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 6 cut(s) 53, 279, 405, 459, 594, 738
BtsCI GGATG 2 cut(s) 720, 739
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 65
BtuMI TCGCGA 1 cut(s) 7
Cac8I GCNNGC 5 cut(s) 151, 452, 483, 715, 786
Cfr13I GGNCC 3 cut(s) 32, 278, 592
Csp6I GTAC 1 cut(s) 408
CspCI CAANNNNNGTGG 2 cut(s) 86, 121
CviAII CATG 7 cut(s) 44, 128, 224, 451, 508, 808, 815
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 3 cut(s) 27, 71, 626
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
DriI GACNNNNNGTC 1 cut(s) 526
EaeI YGGCCR 2 cut(s) 457, 736
Eam1104I CTCTTC 1 cut(s) 204
Eam1105I GACNNNNNGTC 1 cut(s) 526
EarI CTCTTC 1 cut(s) 204
EciI GGCGGA 1 cut(s) 244
Eco31I GGTCTC 2 cut(s) 30, 305
Eco47I GGWCC 1 cut(s) 32
FaeI CATG 7 cut(s) 47, 131, 227, 454, 511, 811, 818
FaqI GGGAC 1 cut(s) 526
FatI CATG 7 cut(s) 43, 127, 223, 450, 507, 807, 814
Fnu4HI GCNGC 2 cut(s) 142, 330
FokI GGATG 2 cut(s) 707, 746
Fsp4HI GCNGC 2 cut(s) 142, 330
FspBI CTAG 3 cut(s) 359, 714, 801
GluI GCNGC 2 cut(s) 142, 330
HaeIII GGCC 6 cut(s) 53, 279, 405, 459, 594, 738
Hin1II CATG 7 cut(s) 47, 131, 227, 454, 511, 811, 818
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 5 cut(s) 301, 335, 561, 620, 660
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 5 cut(s) 20, 221, 374, 410, 829
Hpy188I TCNGA 2 cut(s) 520, 733
Hpy188III TCNNGA 6 cut(s) 6, 298, 386, 392, 434, 664
Hpy8I GTNNAC 5 cut(s) 20, 221, 374, 410, 829
HpyAV CCTTC 5 cut(s) 392, 395, 575, 650, 687
HpyCH4III ACNGT 6 cut(s) 12, 24, 295, 528, 586, 752
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 6 cut(s) 108, 153, 374, 605, 653, 811
HpyF10VI GCNNNNNNNGC 6 cut(s) 150, 155, 326, 456, 611, 744
HpyF3I CTNAG 3 cut(s) 27, 71, 626
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 7 cut(s) 47, 131, 227, 454, 511, 811, 818
Kzo9I GATC 1 cut(s) 388
LmnI GCTCC 1 cut(s) 688
Lsp1109I GCAGC 2 cut(s) 128, 316
LweI GCATC 1 cut(s) 726
MaeI CTAG 3 cut(s) 359, 714, 801
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 4 cut(s) 289, 424, 752, 803
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MboII GAAGA 4 cut(s) 30, 54, 191, 787
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 2 cut(s) 79, 376
MlsI TGGCCA 2 cut(s) 459, 738
MluCI AATT 5 cut(s) 175, 429, 491, 779, 792
MluNI TGGCCA 2 cut(s) 459, 738
MlyI GAGTC 3 cut(s) 295, 555, 654
MnlI CCTC 7 cut(s) 207, 255, 275, 325, 579, 679, 734
Mox20I TGGCCA 2 cut(s) 459, 738
MscI TGGCCA 2 cut(s) 459, 738
MseI TTAA 1 cut(s) 588
Msp20I TGGCCA 2 cut(s) 459, 738
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 6 cut(s) 150, 155, 326, 456, 611, 744
NdeII GATC 1 cut(s) 388
NheI GCTAGC 1 cut(s) 713
NlaIII CATG 7 cut(s) 47, 131, 227, 454, 511, 811, 818
NlaIV GGNNCC 3 cut(s) 33, 280, 704
NmuCI GTSAC 2 cut(s) 752, 803
NruI TCGCGA 1 cut(s) 7
NspI RCATGY 2 cut(s) 454, 811
PaeI GCATGC 1 cut(s) 454
PfeI GAWTC 2 cut(s) 335, 620
PkrI GCNGC 2 cut(s) 143, 331
PleI GAGTC 3 cut(s) 295, 555, 654
PpsI GAGTC 3 cut(s) 295, 555, 654
PspN4I GGNNCC 3 cut(s) 33, 280, 704
PspPI GGNCC 3 cut(s) 32, 278, 592
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 388
RruI TCGCGA 1 cut(s) 7
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 2 cut(s) 142, 330
Sau3AI GATC 1 cut(s) 388
Sau96I GGNCC 3 cut(s) 32, 278, 592
SchI GAGTC 3 cut(s) 295, 555, 654
SduI GDGCHC 2 cut(s) 79, 376
SetI ASST 9 cut(s) 184, 247, 317, 423, 441, 468, 487, 616, 749
SfaNI GCATC 1 cut(s) 726
SfcI CTRYAG 2 cut(s) 151, 531
SinI GGWCC 1 cut(s) 32
SmlI CTYRAG 2 cut(s) 662, 683
SmoI CTYRAG 2 cut(s) 662, 683
SphI GCATGC 1 cut(s) 454
Sse9I AATT 5 cut(s) 175, 429, 491, 779, 792
SsiI CCGC 2 cut(s) 255, 444
SspMI CTAG 3 cut(s) 359, 714, 801
TaaI ACNGT 6 cut(s) 12, 24, 295, 528, 586, 752
TaiI ACGT 1 cut(s) 441
TaqI TCGA 1 cut(s) 618
TasI AATT 5 cut(s) 175, 429, 491, 779, 792
TfiI GAWTC 2 cut(s) 335, 620
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 2 cut(s) 752, 803
TseI GCWGC 2 cut(s) 141, 329
Tsp45I GTSAC 2 cut(s) 752, 803
TspDTI ATGAA 2 cut(s) 255, 831
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 1 cut(s) 72
VneI GTGCAC 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 1 cut(s) 491
XceI RCATGY 2 cut(s) 454, 811
XspI CTAG 3 cut(s) 359, 714, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.