Rmu_sc0002142.1_g000022

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002142.1
OG0000360
Physical Location & Seq
Reverse (-)
64856 .. 74604
9749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002142.1_g000022.1.cds

Sequence Viewer

Length: 4002 bp
atgcacaatgctactcaaagagttcaaccttcaaaattttccaccttccctgcaaagaggaagttgttcggctctggggcaaatttgcgtcaaagtgtcgcttcacgcacctccataggtcgtttttttttttctgatttgtgcccacagccggatcttggcttacaattttccaagacttgcacaattgaacatcttcctcatccgtccatctccttttgtcttggatattatcatcttcactttgatctccctcttgtccggccactggacaacatttgctccatctgctggagtaacttgacaaacgggcaaggccaagccatcttcactgctgagtgctcacactctttccaccaccattgcattgccaacaatgtccagcatggaaatctttgctgccctgcctgcagagcaaaatggaataaaaataatttacctttccaagttccccctcttcaacaaaataacaagagtaaacatggcttcgccgatgatgaacctctctcgtccgccacactcctcaaaacttctggcccccagaatgtaacagtcaagactcatacagagacctctgctatctctgctgccgaatcacgctcccattatcctgttctagttagaatttgtgcaccaccccttcaagatcccgatggtgaaggccgtacacccattgaccttgttacaattctggacgtaagcggtagcatgcatggccaaaagcttgaacttgtcaagcaagctgtcaaattcgtcattgaaaacatggggacttcggacagactgtctatagtatcattctcaacaacttctaaacgactccttcctctccgtagaatgactgttaagggccgtgcaagtgcaatccaagctgtcgaatctcttagagcagatggtggaactgacattgcagaaggactcaagataggaactcatatccttgaggagcgaagggaaaggaaccctgttgctagcatcatcctcttatcggatggccaagatagctactgtgacaacccaagccaaatgttgaagaaattgcctgcttcaattcgttctagtgacatgcaacatgaaatcccagtccacacatttgggtttggcaacgaccataatgcaaagattatgcatactatatctaatgtatcagggggaacgttttcgtacattgaatcagttggcataatacaagacgcttttgctctgtgcattggtggtcttctcagtgttgtggctcaggaacttcgcctcacggtgaggtcagcatcacctggggtgaagatcgtggaaataccatcagggagacatgtcagtcagatttctgatgagcaaggtgttgttgatgttggaaatatgtatgcagaagaggagaaacagtttctggtgtacctctcagttccacaatccgcagctccggataccaagacgtctttggtagacgttttatgcgtgtacaaagatcttggttcagatgagtttatcccggtccaaggtgagaaagtagagataacgagacctgatttttgttctcctgcagaaatggcagtgtctttggaggttgatcggcagcggaacagacttttggtggctgatgctattggagaggcacaaaggttggctgaaatgggaaatctggaggctgcacgggcggttttgactcagcgaagagaaactctcatgacatcaacagcagccaaagctggggatgatctgagtcatatgtttgaaactgagcttaaacaaatcatggataaaatggcaagtatgaatttgtatgaagaggtggggcgtgcttacgctctctcagggatgagttcccatgcacggcagagggcctcggctaggggtaacgcagcaggctcgtgcctggccgataaggcaggtcgcaaacaacttgctactaaagcagcaggtcgtgctacttttgaaacacccgctatggttagaatggtaagaaaatcacagaataagaggaactcctccaaactcatcgtctccaccactcctccgccgcaaaccgaccagctccttaccgccatctctctcctcttccgcaattccaagctctccggcatcttcagtaaccgcacatccaagaaaaattgcgcaatctgctggagtaacgtgacaacagggcaaggccaagccatcttcactgctgagtgctcacactctttccactacccttgcattgccaacaatgtccagcatggaaatctttgctgccccatctgccgagcaaaatgggataagaataatgttcctttccaagttcccccgcttcaacaaaacaacttgggtgcacatggcttcgctgatgatgaacctctcccgttcacctcaccggctcaatcttctggcccccagaatgtcacaatcaaaactcatacagagacctctgctatccctgctgccgattcacgcccacaatatcctgttctagtcagcatctgcgcaccaccccttcaggatcctgatggcgaagtccgtacaccgattgaccttgtaacagttctagacgtaagtggcagcatgcagggccaaaagcttgaccttgtcaagcaagcaatcaaatttgtcatagaaaacatggggtcttcagatagactttctatagtttcattctcaacaaattctagaagagtccttcctcttcgaagaatgaccgttgatggccgtgaaagtgcaattgaagctgtcgaatctcttgtagcaggtggtggaactgacattgcagaaggactcaaaaaaggaacacaagtccttgaagatcggaggcaaaggaacccagttgctagcatcattctcttatccgatggccaagataactactgtcgaaacccaagccaaatgttgaagaaattgcctgcttcaattcgttccagcgacatgcaacatgaaatccctgtccacacatttgggttcggcaacgaccatgatgcaaagattatgcatgctatatctgaggaatcccggggcaccttttcatacattgaatcagttggcatgatacaagacgcctttgctctgtgcattggtggtcttctcagtgttgtggctcaggaacttcgcctcacagtgaggtcagcatcacatggagcgaagattgtatcaataccatcagggagatatgtgagtcagatttctgatgacggctcgcaaggtttagttgatattggaaatatgtacgcagaagaggtgaaacaatttctggtgtatctcttagttccacaatcctcagcttcagagactaagacatcattgatggacgtcttatgcgtgtacagagatctagcttcaaatgagtttatccagctccaaagtgggagagtagagatatcaagaccacagttttgttctcctacagaattggcagtgtgtttggaggttgatcgccagcggaacagacttttggtggctgatgctattggagaggctcaacgcttggctgaaatgggaaatttggagggtgcacgtgaaattttgactcaacgaagagaaactctcttagcatcagcagcagccaaagctggggatagtctcagtaatatgtttgaaactgagcttaaagaaatcagggataaaatggcaagtatgaagttgtacgaagaggcggggcgtgcttatgctctggctggaatgagttcacattcacgccagagggcctctgctaggggtaacgcagaaggctcgtgcctggccatgaagggtcgcaaacaacttgctacaaaagcagcgggtcgtgcttccgggggtcgcggtgtagcagtgactcttgctgccgggggttttggtggcaagggtggtcccaaaggcaaacgctctgcaatggatcacttagtggctgctatgggagactctgatgaagatgatgatatgggcttagctttatttgacggaggttcatttgatggaggcaatgatgtccatcgaggtgcttttgaaacaccagcaatggtaagaatggtacagaaatcacagcagaagaatcaatctaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

1333

Amino Acids

144.55

Weight (kDa)

7.99

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2705
AasI GACNNNNNNGTC 1 cut(s) 1311
AatII GACGTC 2 cut(s) 1430, 3273
Acc16I TGCGCA 2 cut(s) 2107, 2455
Acc36I ACCTGC 3 cut(s) 1871, 1901, 2705
AccB1I GGYRCC 1 cut(s) 2978
AccB7I CCANNNNNTGG 1 cut(s) 291
AccI GTMKAC 1 cut(s) 1437
AccII CGCG 1 cut(s) 3759
AccIII TCCGGA 1 cut(s) 1414
AclI AACGTT 1 cut(s) 1157
AclWI GGATC 5 cut(s) 162, 641, 2465, 2478, 3840
AcoI YGGCCR 7 cut(s) 263, 715, 994, 1869, 2674, 2818, 3699
AcsI RAATTY 9 cut(s) 35, 82, 624, 749, 1768, 2573, 2632, 3460, 3480
AcuI CTGAAG 4 cut(s) 2062, 2450, 2583, 3228
AcvI CACGTG 1 cut(s) 3476
AcyI GRCGYC 3 cut(s) 1427, 3018, 3270
AdeI CACNNNGTG 1 cut(s) 3841
AfaI GTAC 9 cut(s) 667, 1166, 1388, 1454, 2491, 3188, 3284, 3605, 3969
AflIII ACRYGT 1 cut(s) 1306
AhdI GACNNNNNGTC 1 cut(s) 784
AjnI CCWGG 3 cut(s) 1270, 1866, 3696
AjuI GAANNNNNNNTTGG 4 cut(s) 1565, 1597, 3395, 3427
Alw21I GWGCWC 5 cut(s) 344, 634, 2168, 2305, 3475
Alw26I GTCTC 8 cut(s) 563, 1297, 1507, 1999, 2387, 3242, 3545, 3849
Alw44I GTGCAC 3 cut(s) 630, 2301, 3471
AlwI GGATC 5 cut(s) 162, 641, 2465, 2478, 3840
AlwNI CAGNNNCTG 2 cut(s) 1381, 2451
Ama87I CYCGRG 1 cut(s) 2973
Aor13HI TCCGGA 1 cut(s) 1414
ApaLI GTGCAC 3 cut(s) 630, 2301, 3471
ApoI RAATTY 9 cut(s) 35, 82, 624, 749, 1768, 2573, 2632, 3460, 3480
ArsI GACNNNNNNTTYG 6 cut(s) 1506, 1538, 1977, 2009, 3336, 3368
Asp700I GAANNNNTTC 4 cut(s) 65, 195, 1159, 3643
AspLEI GCGC 2 cut(s) 2108, 2456
AspS9I GGNCC 8 cut(s) 536, 850, 1486, 1833, 2360, 2539, 3663, 3806
AsuC2I CCSGG 5 cut(s) 1484, 2974, 2975, 3751, 3784
AsuHPI GGTGA 8 cut(s) 668, 1260, 1267, 1288, 1505, 2329, 2334, 3211
AsuII TTCGAA 1 cut(s) 2656
AsuNHI GCTAGC 2 cut(s) 971, 2795
AvaI CYCGRG 1 cut(s) 2973
AvaII GGWCC 2 cut(s) 1486, 3806
BaeGI GKGCMC 5 cut(s) 146, 634, 2305, 2981, 3475
BalI TGGCCA 4 cut(s) 717, 996, 2820, 3701
BamHI GGATCC 1 cut(s) 2470
BanI GGYRCC 1 cut(s) 2978
BauI CACGAG 2 cut(s) 1861, 3691
BbrPI CACGTG 1 cut(s) 3476
BbsI GAAGAC 3 cut(s) 1211, 2589, 3035
Bbv12I GWGCWC 5 cut(s) 344, 634, 2168, 2305, 3475
BbvCI CCTCAGC 1 cut(s) 3238
BceAI ACGGC 5 cut(s) 648, 837, 1841, 2661, 3169
BcgI CGANNNNNNTGC 8 cut(s) 1097, 1131, 1842, 1876, 2921, 2955, 3672, 3706
BciT130I CCWGG 3 cut(s) 1272, 1868, 3698
BciVI GTATCC 1 cut(s) 1411
BcnI CCSGG 5 cut(s) 1484, 2974, 2975, 3751, 3784
BcoDI GTCTC 8 cut(s) 563, 1297, 1507, 1999, 2387, 3242, 3545, 3849
BfmI CTRYAG 5 cut(s) 409, 789, 1533, 2613, 3363
BfuAI ACCTGC 3 cut(s) 1871, 1901, 2705
BfuI GTATCC 1 cut(s) 1411
BglI GCCNNNNNGGC 1 cut(s) 1877
BglII AGATCT 2 cut(s) 1459, 3289
BlpI GCTNAGC 1 cut(s) 3883
Bme1390I CCNGG 8 cut(s) 1272, 1484, 1868, 2974, 2975, 3698, 3751, 3784
Bme18I GGWCC 2 cut(s) 1486, 3806
BmeRI GACNNNNNGTC 1 cut(s) 784
BmeT110I CYCGRG 1 cut(s) 2973
BmgT120I GGNCC 8 cut(s) 536, 850, 1486, 1833, 2360, 2539, 3663, 3806
BmiI GGNNCC 7 cut(s) 538, 962, 2362, 2472, 2786, 2980, 3808
BmrFI CCNGG 8 cut(s) 1272, 1484, 1868, 2974, 2975, 3698, 3751, 3784
BmrI ACTGGG 2 cut(s) 1076, 2783
BmtI GCTAGC 2 cut(s) 975, 2799
BmuI ACTGGG 2 cut(s) 1076, 2783
BpiI GAAGAC 3 cut(s) 1211, 2589, 3035
BplI GAGNNNNNCTC 4 cut(s) 1659, 1691, 3489, 3521
BpmI CTGGAG 3 cut(s) 313, 1655, 2137
Bpu10I CCTNAGC 3 cut(s) 1236, 3060, 3238
Bpu1102I GCTNAGC 1 cut(s) 3883
Bpu14I TTCGAA 1 cut(s) 2656
BpuEI CTTGAG 2 cut(s) 905, 962
BpuMI CCSGG 5 cut(s) 1484, 2974, 2975, 3751, 3784
BsaAI YACGTR 1 cut(s) 3476
BsaBI GATNNNNATC 1 cut(s) 3927
BsaHI GRCGYC 3 cut(s) 1427, 3018, 3270
BsaI GGTCTC 3 cut(s) 563, 1507, 2387
BsaJI CCNNGG 7 cut(s) 1271, 1489, 1836, 2973, 2974, 3750, 3783
BsaWI WCCGGW 1 cut(s) 1414
BsaXI ACNNNNNCTCC 6 cut(s) 266, 296, 1361, 1391, 1990, 2020
Bse118I RCCGGY 1 cut(s) 2344
Bse1I ACTGG 3 cut(s) 273, 1082, 2789
Bse3DI GCAATG 8 cut(s) 361, 366, 906, 2190, 2730, 3834, 3925, 3960
Bse8I GATNNNNATC 1 cut(s) 3927
BseAI TCCGGA 1 cut(s) 1414
BseBI CCWGG 3 cut(s) 1272, 1868, 3698
BseDI CCNNGG 7 cut(s) 1271, 1489, 1836, 2973, 2974, 3750, 3783
BseGI GGATG 6 cut(s) 202, 978, 997, 1711, 1815, 2090
BseJI GATNNNNATC 1 cut(s) 3927
BseMI GCAATG 8 cut(s) 361, 366, 906, 2190, 2730, 3834, 3925, 3960
BseNI ACTGG 3 cut(s) 273, 1082, 2789
BseRI GAGGAG 6 cut(s) 512, 959, 1382, 1969, 1995, 2036
BseSI GKGCMC 5 cut(s) 146, 634, 2305, 2981, 3475
BseYI CCCAGC 2 cut(s) 1700, 3530
BsgI GTGCAG 1 cut(s) 1626
Bsh1236I CGCG 1 cut(s) 3759
BshNI GGYRCC 1 cut(s) 2978
BsiHKAI GWGCWC 5 cut(s) 344, 634, 2168, 2305, 3475
BsiHKCI CYCGRG 1 cut(s) 2973
BsiSI CCGG 9 cut(s) 152, 262, 1415, 1484, 2070, 2345, 2974, 3750, 3783
BslFI GGGAC 2 cut(s) 784, 3792
BsmAI GTCTC 8 cut(s) 563, 1297, 1507, 1999, 2387, 3242, 3545, 3849
BsmBI CGTCTC 1 cut(s) 1999
BsmFI GGGAC 2 cut(s) 784, 3792
Bso31I GGTCTC 3 cut(s) 563, 1507, 2387
BsoBI CYCGRG 1 cut(s) 2973
Bsp119I TTCGAA 1 cut(s) 2656
Bsp1286I GDGCHC 7 cut(s) 146, 344, 634, 2168, 2305, 2981, 3475
Bsp13I TCCGGA 1 cut(s) 1414
Bsp1407I TGTACA 2 cut(s) 1452, 3282
Bsp1720I GCTNAGC 1 cut(s) 3883
BspEI TCCGGA 1 cut(s) 1414
BspFNI CGCG 1 cut(s) 3759
BspHI TCATGA 1 cut(s) 1677
BspLI GGNNCC 7 cut(s) 538, 962, 2362, 2472, 2786, 2980, 3808
BspMAI CTGCAG 2 cut(s) 413, 1537
BspMI ACCTGC 3 cut(s) 1871, 1901, 2705
BspOI GCTAGC 2 cut(s) 975, 2799
BspPI GGATC 5 cut(s) 162, 641, 2465, 2478, 3840
BspT104I TTCGAA 1 cut(s) 2656
BspT107I GGYRCC 1 cut(s) 2978
BspTNI GGTCTC 3 cut(s) 563, 1507, 2387
BsrDI GCAATG 8 cut(s) 361, 366, 906, 2190, 2730, 3834, 3925, 3960
BsrFI RCCGGY 1 cut(s) 2344
BsrGI TGTACA 2 cut(s) 1452, 3282
BsrI ACTGG 3 cut(s) 273, 1082, 2789
BssAI RCCGGY 1 cut(s) 2344
BssECI CCNNGG 7 cut(s) 1271, 1489, 1836, 2973, 2974, 3750, 3783
BssNI GRCGYC 3 cut(s) 1427, 3018, 3270
BssSI CACGAG 2 cut(s) 1861, 3691
BssT1I CCWWGG 1 cut(s) 1489
Bst2BI CACGAG 2 cut(s) 1861, 3691
Bst2UI CCWGG 3 cut(s) 1272, 1868, 3698
BstACI GRCGYC 3 cut(s) 1427, 3018, 3270
BstAPI GCANNNNNTGC 1 cut(s) 1916
BstAUI TGTACA 2 cut(s) 1452, 3282
BstBAI YACGTR 1 cut(s) 3476
BstBI TTCGAA 1 cut(s) 2656
BstENI CCTNNNNNAGG 2 cut(s) 1840, 3670
BstF5I GGATG 6 cut(s) 202, 978, 997, 1711, 1815, 2090
BstFNI CGCG 1 cut(s) 3759
BstHHI GCGC 2 cut(s) 2108, 2456
BstMAI GTCTC 8 cut(s) 563, 1297, 1507, 1999, 2387, 3242, 3545, 3849
BstNI CCWGG 3 cut(s) 1272, 1868, 3698
BstNSI RCATGY 6 cut(s) 712, 1069, 1310, 2536, 2893, 2957
BstSCI CCNGG 8 cut(s) 1270, 1482, 1866, 2972, 2973, 3696, 3749, 3782
BstSFI CTRYAG 5 cut(s) 409, 789, 1533, 2613, 3363
BstSLI GKGCMC 5 cut(s) 146, 634, 2305, 2981, 3475
BstUI CGCG 1 cut(s) 3759
BstV2I GAAGAC 3 cut(s) 1211, 2589, 3035
BstX2I RGATCY 5 cut(s) 154, 646, 1459, 2470, 3289
BstXI CCANNNNNNTGG 2 cut(s) 1094, 2918
BstYI RGATCY 5 cut(s) 154, 646, 1459, 2470, 3289
BsuI GTATCC 1 cut(s) 1411
BtsCI GGATG 6 cut(s) 202, 978, 997, 1711, 1815, 2090
BtsI GCAGTG 5 cut(s) 330, 1551, 2154, 3381, 3774
BtsIMutI CAGTG 9 cut(s) 266, 330, 1231, 1551, 2154, 3055, 3084, 3381, 3774
BveI ACCTGC 3 cut(s) 1871, 1901, 2705
CaiI CAGNNNCTG 2 cut(s) 1381, 2451
CciI TCATGA 1 cut(s) 1677
CfoI GCGC 2 cut(s) 2108, 2456
Cfr10I RCCGGY 1 cut(s) 2344
Cfr13I GGNCC 8 cut(s) 536, 850, 1486, 1833, 2360, 2539, 3663, 3806
Cfr9I CCCGGG 1 cut(s) 2973
CseI GACGC 3 cut(s) 77, 1202, 3026
Csp6I GTAC 9 cut(s) 666, 1165, 1387, 1453, 2490, 3187, 3283, 3604, 3968
CspCI CAANNNNNGTGG 4 cut(s) 344, 379, 2168, 2203
CviQI GTAC 9 cut(s) 666, 1165, 1387, 1453, 2490, 3187, 3283, 3604, 3968
DraIII CACNNNGTG 1 cut(s) 3841
DrdI GACNNNNNNGTC 1 cut(s) 1311
DriI GACNNNNNGTC 1 cut(s) 784
DseDI GACNNNNNNGTC 1 cut(s) 1311
EaeI YGGCCR 7 cut(s) 263, 715, 994, 1869, 2674, 2818, 3699
Eam1105I GACNNNNNGTC 1 cut(s) 784
EciI GGCGGA 2 cut(s) 502, 1998
Eco130I CCWWGG 1 cut(s) 1489
Eco31I GGTCTC 3 cut(s) 563, 1507, 2387
Eco32I GATATC 1 cut(s) 3339
Eco47I GGWCC 2 cut(s) 1486, 3806
Eco57I CTGAAG 4 cut(s) 2062, 2450, 2583, 3228
Eco72I CACGTG 1 cut(s) 3476
Eco88I CYCGRG 1 cut(s) 2973
EcoNI CCTNNNNNAGG 2 cut(s) 1840, 3670
EcoO109I RGGNCCY 2 cut(s) 1833, 3663
EcoRII CCWGG 3 cut(s) 1270, 1866, 3696
EcoRV GATATC 1 cut(s) 3339
EcoT14I CCWWGG 1 cut(s) 1489
EcoT22I ATGCAT 3 cut(s) 714, 1131, 2955
ErhI CCWWGG 1 cut(s) 1489
Esp3I CGTCTC 1 cut(s) 1999
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FaqI GGGAC 2 cut(s) 784, 3792
FauI CCCGC 4 cut(s) 1942, 2286, 3607, 3730
FauNDI CATATG 1 cut(s) 1719
FblI GTMKAC 1 cut(s) 1437
FokI GGATG 6 cut(s) 189, 965, 1004, 1718, 1822, 2077
FspI TGCGCA 2 cut(s) 2107, 2455
GlaI GCGC 2 cut(s) 2107, 2455
GsaI CCCAGC 2 cut(s) 1704, 3534
GsuI CTGGAG 3 cut(s) 313, 1655, 2137
HapII CCGG 9 cut(s) 152, 262, 1415, 1484, 2070, 2345, 2974, 3750, 3783
HgaI GACGC 3 cut(s) 77, 1202, 3026
HhaI GCGC 2 cut(s) 2108, 2456
Hin1I GRCGYC 3 cut(s) 1427, 3018, 3270
Hin6I GCGC 2 cut(s) 2106, 2454
HinP1I GCGC 2 cut(s) 2106, 2454
HindIII AAGCTT 2 cut(s) 722, 2546
HpaII CCGG 9 cut(s) 152, 262, 1415, 1484, 2070, 2345, 2974, 3750, 3783
HphI GGTGA 8 cut(s) 668, 1260, 1267, 1288, 1505, 2329, 2334, 3211
HpyCH4IV ACGT 8 cut(s) 696, 1157, 1427, 1440, 2124, 2520, 3270, 3475
HpySE526I ACGT 8 cut(s) 696, 1157, 1427, 1440, 2124, 2520, 3270, 3475
Hsp92I GRCGYC 3 cut(s) 1427, 3018, 3270
HspAI GCGC 2 cut(s) 2106, 2454
Kpn2I TCCGGA 1 cut(s) 1414
LmnI GCTCC 7 cut(s) 287, 605, 946, 1417, 2031, 3098, 3321
MaeII ACGT 8 cut(s) 696, 1157, 1427, 1440, 2124, 2520, 3270, 3475
MfeI CAATTG 2 cut(s) 186, 2688
MflI RGATCY 5 cut(s) 154, 646, 1459, 2470, 3289
MhlI GDGCHC 7 cut(s) 146, 344, 634, 2168, 2305, 2981, 3475
MlsI TGGCCA 4 cut(s) 717, 996, 2820, 3701
MluNI TGGCCA 4 cut(s) 717, 996, 2820, 3701
MmeI TCCRAC 1 cut(s) 1327
Mox20I TGGCCA 4 cut(s) 717, 996, 2820, 3701
Mph1103I ATGCAT 3 cut(s) 714, 1131, 2955
MroI TCCGGA 1 cut(s) 1414
MroXI GAANNNNTTC 4 cut(s) 65, 195, 1159, 3643
MscI TGGCCA 4 cut(s) 717, 996, 2820, 3701
MseI TTAA 3 cut(s) 846, 1737, 3567
MslI CAYNNNNRTG 1 cut(s) 3933
Msp20I TGGCCA 4 cut(s) 717, 996, 2820, 3701
MspA1I CMGCKG 3 cut(s) 1570, 3400, 3737
MspI CCGG 9 cut(s) 152, 262, 1415, 1484, 2070, 2345, 2974, 3750, 3783
MspR9I CCNGG 8 cut(s) 1272, 1484, 1868, 2974, 2975, 3698, 3751, 3784
MunI CAATTG 2 cut(s) 186, 2688
MvaI CCWGG 3 cut(s) 1272, 1868, 3698
MvnI CGCG 1 cut(s) 3759
NciI CCSGG 5 cut(s) 1484, 2974, 2975, 3751, 3784
NdeI CATATG 1 cut(s) 1719
NheI GCTAGC 2 cut(s) 971, 2795
NlaIV GGNNCC 7 cut(s) 538, 962, 2362, 2472, 2786, 2980, 3808
NmeAIII GCCGAG 2 cut(s) 1817, 2261
NmuCI GTSAC 5 cut(s) 1010, 1061, 2125, 2371, 3769
NsbI TGCGCA 2 cut(s) 2107, 2455
NsiI ATGCAT 3 cut(s) 714, 1131, 2955
NspI RCATGY 6 cut(s) 712, 1069, 1310, 2536, 2893, 2957
NspV TTCGAA 1 cut(s) 2656
PaeI GCATGC 3 cut(s) 712, 2536, 2957
PagI TCATGA 1 cut(s) 1677
PaqCI CACCTGC 1 cut(s) 2705
PciI ACATGT 1 cut(s) 1306
PcsI WCGNNNNNNNCGW 2 cut(s) 1446, 3276
PdmI GAANNNNTTC 4 cut(s) 65, 195, 1159, 3643
PfeI GAWTC 8 cut(s) 593, 878, 1172, 2417, 2702, 2969, 2996, 3988
PflFI GACNNNGTC 1 cut(s) 2555
PflMI CCANNNNNTGG 1 cut(s) 291
PmaCI CACGTG 1 cut(s) 3476
PmlI CACGTG 1 cut(s) 3476
Ppu21I YACGTR 1 cut(s) 3476
PscI ACATGT 1 cut(s) 1306
Psp1406I AACGTT 1 cut(s) 1157
Psp6I CCWGG 3 cut(s) 1270, 1866, 3696
PspCI CACGTG 1 cut(s) 3476
PspFI CCCAGC 2 cut(s) 1700, 3530
PspGI CCWGG 3 cut(s) 1270, 1866, 3696
PspN4I GGNNCC 7 cut(s) 538, 962, 2362, 2472, 2786, 2980, 3808
PspPI GGNCC 8 cut(s) 536, 850, 1486, 1833, 2360, 2539, 3663, 3806
PstI CTGCAG 2 cut(s) 413, 1537
PstNI CAGNNNCTG 2 cut(s) 1381, 2451
PsuI RGATCY 5 cut(s) 154, 646, 1459, 2470, 3289
PsyI GACNNNGTC 1 cut(s) 2555
RsaI GTAC 9 cut(s) 667, 1166, 1388, 1454, 2491, 3188, 3284, 3605, 3969
RsaNI GTAC 9 cut(s) 666, 1165, 1387, 1453, 2490, 3187, 3283, 3604, 3968
RseI CAYNNNNRTG 1 cut(s) 3933
SaqAI TTAA 3 cut(s) 846, 1737, 3567
Sau96I GGNCC 8 cut(s) 536, 850, 1486, 1833, 2360, 2539, 3663, 3806
ScrFI CCNGG 8 cut(s) 1272, 1484, 1868, 2974, 2975, 3698, 3751, 3784
SduI GDGCHC 7 cut(s) 146, 344, 634, 2168, 2305, 2981, 3475
SfcI CTRYAG 5 cut(s) 409, 789, 1533, 2613, 3363
SfuI TTCGAA 1 cut(s) 2656
SinI GGWCC 2 cut(s) 1486, 3806
SmaI CCCGGG 1 cut(s) 2975
SmiMI CAYNNNNRTG 1 cut(s) 3933
SmlI CTYRAG 2 cut(s) 920, 941
SmoI CTYRAG 2 cut(s) 920, 941
SphI GCATGC 3 cut(s) 712, 2536, 2957
StyD4I CCNGG 8 cut(s) 1270, 1482, 1866, 2972, 2973, 3696, 3749, 3782
StyI CCWWGG 1 cut(s) 1489
TaiI ACGT 8 cut(s) 699, 1160, 1430, 1443, 2127, 2523, 3273, 3478
TaqI TCGA 5 cut(s) 876, 2656, 2700, 2836, 3931
TatI WGTACW 2 cut(s) 1452, 3282
TauI GCSGC 1 cut(s) 2014
TfiI GAWTC 8 cut(s) 593, 878, 1172, 2417, 2702, 2969, 2996, 3988
Tru1I TTAA 3 cut(s) 846, 1737, 3567
Tru9I TTAA 3 cut(s) 846, 1737, 3567
TscAI CASTG 9 cut(s) 273, 337, 1231, 1551, 2161, 3055, 3084, 3381, 3774
TseFI GTSAC 5 cut(s) 1010, 1061, 2125, 2371, 3769
Tsp45I GTSAC 5 cut(s) 1010, 1061, 2125, 2371, 3769
TspGWI ACGGA 4 cut(s) 195, 821, 2477, 3912
TspMI CCCGGG 1 cut(s) 2973
TspRI CASTG 9 cut(s) 273, 337, 1231, 1551, 2161, 3055, 3084, 3381, 3774
Tth111I GACNNNGTC 1 cut(s) 2555
Van91I CCANNNNNTGG 1 cut(s) 291
VneI GTGCAC 3 cut(s) 630, 2301, 3471
VpaK11BI GGWCC 2 cut(s) 1486, 3806
XagI CCTNNNNNAGG 2 cut(s) 1840, 3670
XapI RAATTY 9 cut(s) 35, 82, 624, 749, 1768, 2573, 2632, 3460, 3480
XbaI TCTAGA 2 cut(s) 2515, 2636
XceI RCATGY 6 cut(s) 712, 1069, 1310, 2536, 2893, 2957
XcmI CCANNNNNNNNNTGG 2 cut(s) 1429, 3320
XmaI CCCGGG 1 cut(s) 2973
XmiI GTMKAC 1 cut(s) 1437
XmnI GAANNNNTTC 4 cut(s) 65, 195, 1159, 3643
ZraI GACGTC 2 cut(s) 1428, 3271
Zsp2I ATGCAT 3 cut(s) 714, 1131, 2955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.