RLG00000032426

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000360
Physical Location & Seq
Forward (+)
15068938 .. 15069520
583 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032426

Sequence Viewer

Length: 507 bp
ATGCAAGTGCAATGTGAGAAAGTAGAGATACTGAGACCTGAGGTTTGTTCCCCAGCTGAAAAGGCAGTGTCTTTGGAGGTTGATCGGCAGCGGAACAGAGTTTTGGTGGCTGAATCTATTGCAGAGGCACAAAGGTTGGCTGAGATGGGAAATCTGCAGGGCGCACAGGCTCTTTTGGCTCAACGAAAGGCAATTATATTAGCATCACCAGCGGCCCAAGCCGGAGATTTTCACAGTAATTTGTTTGAAACTGAGCTAAGAGAAATCATTGATAGAATGGCATCTATGGAATTGTATACACAAACCCGGCGTGCTTATGCTCTTGCAGGAATGAGTTCCCGGGTGTCCATTCCTCTGTTGGTCATGATGCCTCCGGGCTCCGGGGCCAATGCTTCATCAGTTGACGCCCCAGGTGATTCTTCTGCCCCAGTTGGTCCTTTTGAAATACCTGCTATGGTCAGAATGGTACTAAAATCACAGAAGAGGAATCAATCTGGTCCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

169

Amino Acids

18.17

Weight (kDa)

6.6

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WAV3_C PF25243 27 - 93 4.2e-06 E3 ubiquitin-protein ligase WAV3-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 457
AccI GTMKAC 1 cut(s) 296
AciI CCGC 2 cut(s) 91, 212
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 1 cut(s) 468
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 2 cut(s) 248, 443
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 2 cut(s) 56, 256
AluI AGCT 2 cut(s) 56, 256
Alw26I GTCTC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 2 cut(s) 213, 384
ApeKI GCWGC 1 cut(s) 88
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
Asp700I GAANNNNTTC 1 cut(s) 334
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 4 cut(s) 214, 384, 434, 497
AsuC2I CCSGG 5 cut(s) 307, 340, 341, 375, 382
AsuHPI GGTGA 2 cut(s) 198, 425
AvaI CYCGRG 1 cut(s) 339
AvaII GGWCC 2 cut(s) 434, 497
AxyI CCTNAGG 1 cut(s) 39
BanII GRGCYC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 411
BcnI CCSGG 5 cut(s) 307, 340, 341, 375, 382
BcoDI GTCTC 1 cut(s) 28
BfmI CTRYAG 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 2 cut(s) 89, 213
BlsI GCNGC 2 cut(s) 90, 214
Bme1390I CCNGG 6 cut(s) 307, 340, 341, 375, 382, 411
Bme18I GGWCC 2 cut(s) 434, 497
BmeT110I CYCGRG 1 cut(s) 339
BmgT120I GGNCC 4 cut(s) 214, 384, 434, 497
BmiI GGNNCC 2 cut(s) 379, 385
BmrFI CCNGG 6 cut(s) 307, 340, 341, 375, 382, 411
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 3 cut(s) 212, 290, 357
BmuI ACTGGG 1 cut(s) 422
BpuMI CCSGG 5 cut(s) 307, 340, 341, 375, 382
BsaHI GRCGYC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 3 cut(s) 339, 381, 409
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 428
Bse21I CCTNAGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 3 cut(s) 339, 381, 409
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 17
BseMII CTCAG 4 cut(s) 23, 30, 132, 243
BseNI ACTGG 1 cut(s) 428
BseXI GCAGC 1 cut(s) 100
BseYI CCCAGC 1 cut(s) 52
BshFI GGCC 2 cut(s) 215, 386
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 5 cut(s) 222, 307, 340, 374, 381
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 28
BsnI GGCC 2 cut(s) 215, 386
Bso31I GGTCTC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 2 cut(s) 91, 212
BspANI GGCC 2 cut(s) 215, 386
BspCNI CTCAG 4 cut(s) 24, 31, 133, 244
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 2 cut(s) 379, 385
BspMAI CTGCAG 1 cut(s) 159
BspMI ACCTGC 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 17
BsrI ACTGG 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 339, 381, 409
BssMI GATC 1 cut(s) 82
BssNAI GTATAC 1 cut(s) 297
BssNI GRCGYC 1 cut(s) 405
Bst1107I GTATAC 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 476
BstACI GRCGYC 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 5 cut(s) 32, 39, 141, 252, 257
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 4 cut(s) 62, 176, 209, 218
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 6 cut(s) 305, 338, 339, 373, 380, 409
BstSFI CTRYAG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 100
BstZ17I GTATAC 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 39
BsuRI GGCC 2 cut(s) 215, 386
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 363
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 4 cut(s) 214, 384, 434, 497
Cfr9I CCCGGG 1 cut(s) 339
CseI GACGC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 467
CviAII CATG 1 cut(s) 364
CviQI GTAC 1 cut(s) 467
DdeI CTNAG 5 cut(s) 32, 39, 141, 252, 257
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 380
Eco31I GGTCTC 1 cut(s) 28
Eco47I GGWCC 2 cut(s) 434, 497
Eco81I CCTNAGG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 380
FaeI CATG 1 cut(s) 367
FaiI YATR 6 cut(s) 197, 287, 297, 318, 365, 455
FatI CATG 1 cut(s) 363
FblI GTMKAC 1 cut(s) 296
Fnu4HI GCNGC 2 cut(s) 89, 213
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 89, 213
GlaI GCGC 1 cut(s) 163
GluI GCNGC 2 cut(s) 89, 213
GsaI CCCAGC 1 cut(s) 56
HaeIII GGCC 2 cut(s) 215, 386
HapII CCGG 5 cut(s) 222, 307, 340, 374, 381
HgaI GACGC 1 cut(s) 413
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 3 cut(s) 113, 416, 487
HpaII CCGG 5 cut(s) 222, 307, 340, 374, 381
HphI GGTGA 2 cut(s) 198, 425
Hpy166II GTNNAC 2 cut(s) 297, 403
Hpy188I TCNGA 1 cut(s) 461
Hpy188III TCNNGA 1 cut(s) 364
Hpy8I GTNNAC 2 cut(s) 297, 403
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 5 cut(s) 4, 10, 122, 157, 326
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 176, 209, 218
HpyF3I CTNAG 5 cut(s) 32, 39, 141, 252, 257
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 383
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 3 cut(s) 212, 290, 357
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 2 cut(s) 411, 493
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 3 cut(s) 192, 238, 290
MnlI CCTC 6 cut(s) 34, 70, 118, 363, 381, 477
MroXI GAANNNNTTC 1 cut(s) 334
MspA1I CMGCKG 3 cut(s) 56, 91, 212
MspI CCGG 5 cut(s) 222, 307, 340, 374, 381
MspR9I CCNGG 6 cut(s) 307, 340, 341, 375, 382, 411
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 4 cut(s) 62, 176, 209, 218
NciI CCSGG 5 cut(s) 307, 340, 341, 375, 382
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 2 cut(s) 379, 385
PagI TCATGA 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 3 cut(s) 113, 416, 487
PkrI GCNGC 2 cut(s) 90, 214
Psp6I CCWGG 1 cut(s) 409
PspFI CCCAGC 1 cut(s) 52
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 2 cut(s) 379, 385
PspPI GGNCC 4 cut(s) 214, 384, 434, 497
PstI CTGCAG 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 468
RsaNI GTAC 1 cut(s) 467
SatI GCNGC 2 cut(s) 89, 213
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 4 cut(s) 214, 384, 434, 497
ScrFI CCNGG 6 cut(s) 307, 340, 341, 375, 382, 411
SduI GDGCHC 1 cut(s) 380
SetI ASST 8 cut(s) 40, 45, 58, 81, 137, 258, 415, 451
SfaNI GCATC 3 cut(s) 212, 290, 357
SfcI CTRYAG 1 cut(s) 155
SinI GGWCC 2 cut(s) 434, 497
SmaI CCCGGG 1 cut(s) 341
Sse9I AATT 3 cut(s) 192, 238, 290
SsiI CCGC 2 cut(s) 91, 212
StyD4I CCNGG 6 cut(s) 305, 338, 339, 373, 380, 409
TaaI ACNGT 1 cut(s) 236
TasI AATT 3 cut(s) 192, 238, 290
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 3 cut(s) 113, 416, 487
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 384
TspMI CCCGGG 1 cut(s) 339
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 2 cut(s) 434, 497
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmaI CCCGGG 1 cut(s) 339
XmiI GTMKAC 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.