Rh5DG138200

VWA domain containing CoxE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000360
Physical Location & Seq
Forward (+)
13896546 .. 13900170
3625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG138200.1

Sequence Viewer

Length: 2049 bp
ATGTCTTCTCGGACTGCATCTGATCAAAACAATTGTGGCATTTGTCTGAGTAGCATGGCAACCCCGAAAGGCCAAGCCATCTTCACTGCCCAATGCTCACACTCCTTCCACTACCCTTGCATTGTCCAGAATGTTCAGCATGGAAATCTTAGTTGCCCCATTTGCCGAGCAATATGGGATAAGCATAATGTTCCTTTCCAACCAAACAACTGGACTACTTCCCCCTCTCAACATAACAACTCAGGTGATCCCCCTCACCCATGGGGTGTTTTCCCTCAGCAAAACAACTTGGGTGGGAACTCTCCCAACATCTCATTCTCATTCCAGCCGCAACAGCCACCCCATCAGACTTATCGTCAGTACTCGTATCAGCAACCTAGTTGGAATTATCCTTCCTTCCCATTCGTGCAGCAAACCCAGGCCCCTCCCCAGCCACCTAGCTTCTCTGATGATGAACCTCTTTTGTCCACCTCGCCCATGCAATCCAATGACCCCCAGGGTATAACAATTAAGACTCAGACCGAGTCCTTGGCTATCTCTGCTGCAGAATCTCATCCACGATATCCTGTTCTTGTCAGCATTTGCGCACCATCTCTTCAAGATACCGATGGCCATGGGAGTACCCCGGTCGACCTTGTGACAGTTCTGGATGTAAGTGGCAGCATGAGTGGCCTAAAGCTTGACCTTGTGAAGCGCGCTGTCAAATTTATCATACAAAACTTGGGGCCTTCAGACCGCCTTTCAATAGTTACATTCTCAACAACTGCTAGAAGAGTCTTTCCTCTCAGAAGAATGTCTGTTGAAGGCCGTAAAAATGCTGTGCGAGCTGTCAATTCTCTTAGACCAGATAACATGACCAACATTGTGGCAGGACTCGAGATAGGAATTCGGGTCCTTGAAGAAAGAAGGGAAAGGAACCCAGTTGCTAGCATCATGCTTTTATCCGATGGTGTGGATTCTTACTGTCATAGTCCAAGCCAACTGTTGGGCCAATTGCCTGCTTCGATTCGCTCTAATTGTATGCAACATGAAATTCCAGTCCACACATTTGGGTTTGGCAGCGACCATGATCCAAATACTATGCATGCTATATCTAATGCGTCAGGTGGCACCTTTTCATTCATTGAATCAGTTGGCATGATACAAGATTCCTTTGCTCTGTGCATTGGTGGTCTTCTCAGTGTTGTGGCTCAGGAAGTTCGCCTCACAGTAAGATCAGCATCACGTGGTGTGAAGATTGTAGCAATACCATCAGGGAGATATGTCAGAAATATATCTGATGAGGGCTTGCAAGGTGTGGTTGATGTTGGGAGTCTCTACGCAGAAGAGGAGAAACAATTTCTGGTCTACCTCTTAGTTCCACAATCCTCAGCTTCAGATACAAGGACATCATTGTTAGACGTGTCATGCGTGTACAGAGATCTAGCTTCAAATGAGTTAATCCAGATGCAAGGTGAGCTAGTTGAGATACCGAGACCTGTGGTTTGTTCCCCTGCAGATCAGGTAGTCTCTTTAGAGGTTGATCGCCAGCGCAACAGAATTTTGGTCTCTGAAACTATAGCAGAGGCACAAGGTTTGGCTGAGACTGGAAATCTGGAGGCTGCACGGGCCATTTTGACTCAACGAAGAGAAACTCTCTTAACAACACCAGCAGCCAGAGCAGGGGATGGTCTCAGCAATTTGCTCGAAACTGAGCTTCAAGAAATCATGGATAGAATGGCAACTATGGATTTGTATACTCACACTGGGCGTGCTTATGCCCTCTCGGGAATGAGCTCTCATTCACTGCAGAGAGCCACAACTAGGGGTGACACAACTACTTCATGCCTTTCCGCAAGTTTTGGTGCCGCTCAGGCTTCATATTCCGCTGGGGGTATCAATTACCTGCAGCACGGTGGTATCTTTCAGCAGCAGCAGCAGTCTCTCTCCGCAGGTGCCACTCCATTTGCGAGTCCAGCATCATTGCCGCTAGGTGGTGCTTATGAAACATCTTCTATGGTTAGAATGGTACAAAAATCAAAGGATCTTGGCACTAGTTATACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

682

Amino Acids

73.94

Weight (kDa)

6.11

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 10 - 56 2e-07 Ring finger domain
zf-RING_11 PF17123 11 - 41 1.5e-09 RING-like zinc finger
zf-C3HC4 PF00097 12 - 55 4e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 12 - 55 6.8e-07 Zinc finger, C3HC4 type (RING finger)
VWA PF00092 211 - 377 7.3e-22 von Willebrand factor type A domain
VWA_3 PF13768 211 - 374 3.5e-17 von Willebrand factor type A domain
VWA_2 PF13519 212 - 317 7.8e-17 von Willebrand factor type A domain
Vwaint PF14624 559 - 674 1.7e-11 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1922
Acc16I TGCGCA 1 cut(s) 586
Acc36I ACCTGC 2 cut(s) 1893, 1922
AccB1I GGYRCC 3 cut(s) 1109, 1844, 1934
AccB7I CCANNNNNTGG 1 cut(s) 985
AccBSI CCGCTC 1 cut(s) 1850
AccI GTMKAC 3 cut(s) 630, 1347, 1736
AccII CGCG 1 cut(s) 696
AciI CCGC 7 cut(s) 329, 736, 1833, 1848, 1866, 1929, 1967
AclWI GGATC 3 cut(s) 242, 1064, 2031
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 4 cut(s) 704, 885, 1032, 1539
AcuI CTGAAG 2 cut(s) 714, 1359
AcvI CACGTG 1 cut(s) 1226
AdeI CACNNNGTG 1 cut(s) 1229
AfaI GTAC 4 cut(s) 362, 622, 1415, 2010
AfiI CCNNNNNNNGG 4 cut(s) 985, 1662, 1803, 1973
AflIII ACRYGT 1 cut(s) 1401
AgsI TTSAA 7 cut(s) 599, 744, 803, 899, 1127, 1431, 1700
AhdI GACNNNNNGTC 1 cut(s) 354
AhlI ACTAGT 1 cut(s) 2033
AjiI CACGTC 1 cut(s) 1402
AjnI CCWGG 2 cut(s) 417, 495
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 8 cut(s) 441, 679, 827, 1373, 1427, 1459, 1696, 1776
AluI AGCT 8 cut(s) 441, 679, 827, 1373, 1427, 1459, 1696, 1776
Alw21I GWGCWC 1 cut(s) 1778
Alw26I GTCTC 7 cut(s) 1319, 1468, 1513, 1552, 1577, 1676, 1926
AlwI GGATC 3 cut(s) 242, 1064, 2031
Ama87I CYCGRG 2 cut(s) 875, 1765
AoxI GGCC 8 cut(s) 70, 420, 610, 670, 725, 805, 988, 1608
ApoI RAATTY 4 cut(s) 704, 885, 1032, 1539
ArsI GACNNNNNNTTYG 2 cut(s) 1467, 1499
AspLEI GCGC 4 cut(s) 587, 696, 698, 1533
AspS9I GGNCC 5 cut(s) 421, 725, 892, 988, 1608
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 4 cut(s) 248, 257, 1466, 1820
AsuNHI GCTAGC 1 cut(s) 926
AvaI CYCGRG 2 cut(s) 875, 1765
AvaII GGWCC 1 cut(s) 892
BaeI ACNNNNGTAYC 2 cut(s) 1882, 1915
BalI TGGCCA 1 cut(s) 612
BanI GGYRCC 3 cut(s) 1109, 1844, 1934
BanII GRGCYC 1 cut(s) 1778
BbrPI CACGTG 1 cut(s) 1226
BbsI GAAGAC 1 cut(s) 1166
Bbv12I GWGCWC 1 cut(s) 1778
BbvCI CCTCAGC 2 cut(s) 276, 1369
BccI CCATC 7 cut(s) 86, 351, 598, 602, 941, 1258, 1661
BceAI ACGGC 1 cut(s) 792
BcgI CGANNNNNNTGC 2 cut(s) 1666, 1700
BciT130I CCWGG 2 cut(s) 419, 497
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 7 cut(s) 1319, 1468, 1513, 1552, 1577, 1676, 1926
BcuI ACTAGT 1 cut(s) 2033
BfaI CTAG 9 cut(s) 378, 438, 768, 927, 1424, 1460, 1803, 1970, 2034
BfmI CTRYAG 5 cut(s) 543, 1494, 1557, 1787, 1886
BfuAI ACCTGC 2 cut(s) 1893, 1922
BglI GCCNNNNNGGC 1 cut(s) 1853
BglII AGATCT 1 cut(s) 1420
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 3 cut(s) 419, 497, 626
Bme18I GGWCC 1 cut(s) 892
BmeRI GACNNNNNGTC 1 cut(s) 354
BmeT110I CYCGRG 2 cut(s) 875, 1765
BmgBI CACGTC 1 cut(s) 1402
BmgT120I GGNCC 5 cut(s) 421, 725, 892, 988, 1608
BmiI GGNNCC 7 cut(s) 423, 726, 893, 917, 1111, 1846, 1936
BmrFI CCNGG 3 cut(s) 419, 497, 626
BmrI ACTGGG 2 cut(s) 914, 1755
BmsI GCATC 5 cut(s) 26, 939, 1229, 1437, 1967
BmtI GCTAGC 1 cut(s) 930
BmuI ACTGGG 2 cut(s) 914, 1755
BpiI GAAGAC 1 cut(s) 1166
BplI GAGNNNNNCTC 2 cut(s) 1620, 1652
BpmI CTGGAG 1 cut(s) 1616
Bpu10I CCTNAGC 4 cut(s) 276, 1191, 1369, 1851
BpuMI CCSGG 1 cut(s) 626
BsaAI YACGTR 1 cut(s) 1226
BsaBI GATNNNNATC 1 cut(s) 1219
BsaI GGTCTC 3 cut(s) 1468, 1552, 1676
BsaJI CCNNGG 7 cut(s) 260, 417, 495, 496, 528, 613, 624
Bsc4I CCNNNNNNNGG 4 cut(s) 985, 1662, 1803, 1973
Bse1I ACTGG 5 cut(s) 215, 920, 1037, 1591, 1750
Bse3DI GCAATG 1 cut(s) 1961
Bse8I GATNNNNATC 1 cut(s) 1219
BseBI CCWGG 2 cut(s) 419, 497
BseDI CCNNGG 7 cut(s) 260, 417, 495, 496, 528, 613, 624
BseGI GGATG 3 cut(s) 553, 655, 1672
BseJI GATNNNNATC 1 cut(s) 1219
BseLI CCNNNNNNNGG 4 cut(s) 985, 1662, 1803, 1973
BseMI GCAATG 1 cut(s) 1961
BseNI ACTGG 5 cut(s) 215, 920, 1037, 1591, 1750
BsePI GCGCGC 1 cut(s) 694
BseRI GAGGAG 1 cut(s) 1343
BseYI CCCAGC 2 cut(s) 429, 1868
BsgI GTGCAG 2 cut(s) 428, 1587
Bsh1236I CGCG 1 cut(s) 696
Bsh1285I CGRYCG 1 cut(s) 630
BshFI GGCC 8 cut(s) 72, 422, 612, 672, 727, 807, 990, 1610
BshNI GGYRCC 3 cut(s) 1109, 1844, 1934
BsiEI CGRYCG 1 cut(s) 630
BsiHKAI GWGCWC 1 cut(s) 1778
BsiHKCI CYCGRG 2 cut(s) 875, 1765
BsiSI CCGG 1 cut(s) 626
BslI CCNNNNNNNGG 4 cut(s) 985, 1662, 1803, 1973
BsmAI GTCTC 7 cut(s) 1319, 1468, 1513, 1552, 1577, 1676, 1926
BsnI GGCC 8 cut(s) 72, 422, 612, 672, 727, 807, 990, 1610
Bso31I GGTCTC 3 cut(s) 1468, 1552, 1676
BsoBI CYCGRG 2 cut(s) 875, 1765
Bsp1286I GDGCHC 1 cut(s) 1778
Bsp1407I TGTACA 1 cut(s) 1413
Bsp143I GATC 8 cut(s) 22, 247, 1069, 1214, 1420, 1498, 1522, 2023
Bsp19I CCATGG 2 cut(s) 260, 613
BspACI CCGC 7 cut(s) 329, 736, 1833, 1848, 1866, 1929, 1967
BspANI GGCC 8 cut(s) 72, 422, 612, 672, 727, 807, 990, 1610
BspFNI CGCG 1 cut(s) 696
BspLI GGNNCC 7 cut(s) 423, 726, 893, 917, 1111, 1846, 1936
BspMAI CTGCAG 4 cut(s) 547, 1498, 1791, 1890
BspMI ACCTGC 2 cut(s) 1893, 1922
BspOI GCTAGC 1 cut(s) 930
BspPI GGATC 3 cut(s) 242, 1064, 2031
BspT107I GGYRCC 3 cut(s) 1109, 1844, 1934
BspTNI GGTCTC 3 cut(s) 1468, 1552, 1676
BsrBI CCGCTC 1 cut(s) 1850
BsrDI GCAATG 1 cut(s) 1961
BsrGI TGTACA 1 cut(s) 1413
BsrI ACTGG 5 cut(s) 215, 920, 1037, 1591, 1750
BssECI CCNNGG 7 cut(s) 260, 417, 495, 496, 528, 613, 624
BssHII GCGCGC 1 cut(s) 694
BssMI GATC 8 cut(s) 22, 247, 1069, 1214, 1420, 1498, 1522, 2023
BssNAI GTATAC 1 cut(s) 1737
BssT1I CCWWGG 3 cut(s) 260, 528, 613
Bst1107I GTATAC 1 cut(s) 1737
Bst2UI CCWGG 2 cut(s) 419, 497
Bst4CI ACNGT 5 cut(s) 643, 965, 984, 1210, 1895
Bst6I CTCTTC 4 cut(s) 600, 766, 1320, 1621
BstAUI TGTACA 1 cut(s) 1413
BstBAI YACGTR 1 cut(s) 1226
BstC8I GCNNGC 8 cut(s) 696, 825, 928, 999, 1086, 1289, 1529, 1752
BstDSI CCRYGG 2 cut(s) 260, 613
BstF5I GGATG 3 cut(s) 553, 655, 1672
BstFNI CGCG 1 cut(s) 696
BstHHI GCGC 4 cut(s) 587, 696, 698, 1533
BstKTI GATC 8 cut(s) 25, 250, 1072, 1217, 1423, 1501, 1525, 2026
BstMAI GTCTC 7 cut(s) 1319, 1468, 1513, 1552, 1577, 1676, 1926
BstMBI GATC 8 cut(s) 22, 247, 1069, 1214, 1420, 1498, 1522, 2023
BstMCI CGRYCG 1 cut(s) 630
BstNI CCWGG 2 cut(s) 419, 497
BstNSI RCATGY 1 cut(s) 1088
BstSCI CCNGG 3 cut(s) 417, 495, 624
BstSFI CTRYAG 5 cut(s) 543, 1494, 1557, 1787, 1886
BstUI CGCG 1 cut(s) 696
BstV2I GAAGAC 1 cut(s) 1166
BstX2I RGATCY 2 cut(s) 1420, 2023
BstXI CCANNNNNNTGG 3 cut(s) 210, 865, 1049
BstYI RGATCY 2 cut(s) 1420, 2023
BstZ17I GTATAC 1 cut(s) 1737
BsuRI GGCC 8 cut(s) 72, 422, 612, 672, 727, 807, 990, 1610
BtgI CCRYGG 2 cut(s) 260, 613
BtrI CACGTC 1 cut(s) 1402
BtsCI GGATG 3 cut(s) 553, 655, 1672
BtsI GCAGTG 2 cut(s) 84, 1784
BtsIMutI CAGTG 4 cut(s) 84, 1186, 1743, 1784
BveI ACCTGC 2 cut(s) 1893, 1922
Cac8I GCNNGC 8 cut(s) 696, 825, 928, 999, 1086, 1289, 1529, 1752
CfoI GCGC 4 cut(s) 587, 696, 698, 1533
Cfr13I GGNCC 5 cut(s) 421, 725, 892, 988, 1608
CseI GACGC 1 cut(s) 1089
Csp6I GTAC 4 cut(s) 361, 621, 1414, 2009
CspCI CAANNNNNGTGG 6 cut(s) 98, 133, 274, 309, 1927, 1962
CviQI GTAC 4 cut(s) 361, 621, 1414, 2009
DpnI GATC 8 cut(s) 24, 249, 1071, 1216, 1422, 1500, 1524, 2025
DpnII GATC 8 cut(s) 22, 247, 1069, 1214, 1420, 1498, 1522, 2023
DraIII CACNNNGTG 1 cut(s) 1229
DriI GACNNNNNGTC 1 cut(s) 354
EaeI YGGCCR 1 cut(s) 610
Eam1104I CTCTTC 4 cut(s) 600, 766, 1320, 1621
Eam1105I GACNNNNNGTC 1 cut(s) 354
EarI CTCTTC 4 cut(s) 600, 766, 1320, 1621
Ecl136II GAGCTC 1 cut(s) 1776
Eco130I CCWWGG 3 cut(s) 260, 528, 613
Eco24I GRGCYC 1 cut(s) 1778
Eco31I GGTCTC 3 cut(s) 1468, 1552, 1676
Eco32I GATATC 1 cut(s) 563
Eco47I GGWCC 1 cut(s) 892
Eco53kI GAGCTC 1 cut(s) 1776
Eco57I CTGAAG 2 cut(s) 714, 1359
Eco72I CACGTG 1 cut(s) 1226
Eco88I CYCGRG 2 cut(s) 875, 1765
EcoICRI GAGCTC 1 cut(s) 1776
EcoO109I RGGNCCY 3 cut(s) 421, 725, 892
EcoRI GAATTC 1 cut(s) 885
EcoRII CCWGG 2 cut(s) 417, 495
EcoRV GATATC 1 cut(s) 563
EcoT14I CCWWGG 3 cut(s) 260, 528, 613
EcoT22I ATGCAT 1 cut(s) 1086
EcoT38I GRGCYC 1 cut(s) 1778
ErhI CCWWGG 3 cut(s) 260, 528, 613
FbaI TGATCA 1 cut(s) 22
FblI GTMKAC 3 cut(s) 630, 1347, 1736
FokI GGATG 3 cut(s) 540, 662, 1679
FriOI GRGCYC 1 cut(s) 1778
FspBI CTAG 9 cut(s) 378, 438, 768, 927, 1424, 1460, 1803, 1970, 2034
FspI TGCGCA 1 cut(s) 586
GlaI GCGC 4 cut(s) 586, 695, 697, 1532
GsaI CCCAGC 2 cut(s) 433, 1872
GsuI CTGGAG 1 cut(s) 1616
HaeIII GGCC 8 cut(s) 72, 422, 612, 672, 727, 807, 990, 1610
HapII CCGG 1 cut(s) 626
HgaI GACGC 1 cut(s) 1089
HhaI GCGC 4 cut(s) 587, 696, 698, 1533
Hin6I GCGC 4 cut(s) 585, 694, 696, 1531
HinP1I GCGC 4 cut(s) 585, 694, 696, 1531
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 1 cut(s) 677
HpaII CCGG 1 cut(s) 626
HphI GGTGA 4 cut(s) 248, 257, 1466, 1820
Hpy166II GTNNAC 6 cut(s) 468, 631, 1042, 1348, 1414, 1737
Hpy188III TCNNGA 9 cut(s) 127, 599, 647, 877, 1193, 1444, 1595, 1700, 1767
Hpy8I GTNNAC 6 cut(s) 468, 631, 1042, 1348, 1414, 1737
HpyAV CCTTC 6 cut(s) 115, 402, 406, 738, 797, 900
HpyCH4III ACNGT 5 cut(s) 643, 965, 984, 1210, 1895
HpyCH4IV ACGT 2 cut(s) 1225, 1401
HpySE526I ACGT 2 cut(s) 1225, 1401
HspAI GCGC 4 cut(s) 585, 694, 696, 1531
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 8 cut(s) 22, 247, 1069, 1214, 1420, 1498, 1522, 2023
LweI GCATC 5 cut(s) 26, 939, 1229, 1437, 1967
MaeI CTAG 9 cut(s) 378, 438, 768, 927, 1424, 1460, 1803, 1970, 2034
MaeII ACGT 2 cut(s) 1225, 1401
MaeIII GTNAC 3 cut(s) 637, 748, 1808
MalI GATC 8 cut(s) 24, 249, 1071, 1216, 1422, 1500, 1524, 2025
MbiI CCGCTC 1 cut(s) 1850
MboI GATC 8 cut(s) 22, 247, 1069, 1214, 1420, 1498, 1522, 2023
MfeI CAATTG 2 cut(s) 31, 992
MflI RGATCY 2 cut(s) 1420, 2023
MhlI GDGCHC 1 cut(s) 1778
MlsI TGGCCA 1 cut(s) 612
MluNI TGGCCA 1 cut(s) 612
MlyI GAGTC 7 cut(s) 508, 533, 783, 867, 1321, 1612, 1960
MmeI TCCRAC 2 cut(s) 223, 362
Mox20I TGGCCA 1 cut(s) 612
Mph1103I ATGCAT 1 cut(s) 1086
MscI TGGCCA 1 cut(s) 612
MseI TTAA 3 cut(s) 510, 1439, 1640
Msp20I TGGCCA 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 1868
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 3 cut(s) 419, 497, 626
MunI CAATTG 2 cut(s) 31, 992
MvaI CCWGG 2 cut(s) 419, 497
MvnI CGCG 1 cut(s) 696
NciI CCSGG 1 cut(s) 626
NcoI CCATGG 2 cut(s) 260, 613
NdeII GATC 8 cut(s) 22, 247, 1069, 1214, 1420, 1498, 1522, 2023
NheI GCTAGC 1 cut(s) 926
NlaIV GGNNCC 7 cut(s) 423, 726, 893, 917, 1111, 1846, 1936
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 2 cut(s) 637, 1808
NsbI TGCGCA 1 cut(s) 586
NsiI ATGCAT 1 cut(s) 1086
NspI RCATGY 1 cut(s) 1088
PaeI GCATGC 1 cut(s) 1088
PaeR7I CTCGAG 1 cut(s) 875
PaqCI CACCTGC 1 cut(s) 1922
PasI CCCWGGG 1 cut(s) 496
PauI GCGCGC 1 cut(s) 694
PcsI WCGNNNNNNNCGW 1 cut(s) 1407
PfeI GAWTC 5 cut(s) 548, 956, 1006, 1127, 1148
PflFI GACNNNGTC 1 cut(s) 523
PflMI CCANNNNNTGG 1 cut(s) 985
PleI GAGTC 7 cut(s) 508, 532, 782, 867, 1320, 1612, 1959
PmaCI CACGTG 1 cut(s) 1226
PmlI CACGTG 1 cut(s) 1226
PpsI GAGTC 7 cut(s) 508, 532, 782, 867, 1320, 1612, 1959
Ppu21I YACGTR 1 cut(s) 1226
PpuMI RGGWCCY 1 cut(s) 892
Psp124BI GAGCTC 1 cut(s) 1778
Psp5II RGGWCCY 1 cut(s) 892
Psp6I CCWGG 2 cut(s) 417, 495
PspCI CACGTG 1 cut(s) 1226
PspFI CCCAGC 2 cut(s) 429, 1868
PspGI CCWGG 2 cut(s) 417, 495
PspN4I GGNNCC 7 cut(s) 423, 726, 893, 917, 1111, 1846, 1936
PspPI GGNCC 5 cut(s) 421, 725, 892, 988, 1608
PspPPI RGGWCCY 1 cut(s) 892
PstI CTGCAG 4 cut(s) 547, 1498, 1791, 1890
PsuI RGATCY 2 cut(s) 1420, 2023
PsyI GACNNNGTC 1 cut(s) 523
PteI GCGCGC 1 cut(s) 694
RsaI GTAC 4 cut(s) 362, 622, 1415, 2010
RsaNI GTAC 4 cut(s) 361, 621, 1414, 2009
SacI GAGCTC 1 cut(s) 1778
SalI GTCGAC 1 cut(s) 629
SaqAI TTAA 3 cut(s) 510, 1439, 1640
Sau3AI GATC 8 cut(s) 22, 247, 1069, 1214, 1420, 1498, 1522, 2023
Sau96I GGNCC 5 cut(s) 421, 725, 892, 988, 1608
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 7 cut(s) 508, 533, 783, 867, 1321, 1612, 1960
ScrFI CCNGG 3 cut(s) 419, 497, 626
SduI GDGCHC 1 cut(s) 1778
SfaNI GCATC 5 cut(s) 26, 939, 1229, 1437, 1967
SfcI CTRYAG 5 cut(s) 543, 1494, 1557, 1787, 1886
Sfr274I CTCGAG 1 cut(s) 875
SinI GGWCC 1 cut(s) 892
SlaI CTCGAG 1 cut(s) 875
SmlI CTYRAG 1 cut(s) 875
SmoI CTYRAG 1 cut(s) 875
SpeI ACTAGT 1 cut(s) 2033
SphI GCATGC 1 cut(s) 1088
SsiI CCGC 7 cut(s) 329, 736, 1833, 1848, 1866, 1929, 1967
SspMI CTAG 9 cut(s) 378, 438, 768, 927, 1424, 1460, 1803, 1970, 2034
SstI GAGCTC 1 cut(s) 1778
StyD4I CCNGG 3 cut(s) 417, 495, 624
StyI CCWWGG 3 cut(s) 260, 528, 613
TaaI ACNGT 5 cut(s) 643, 965, 984, 1210, 1895
TaiI ACGT 2 cut(s) 1228, 1404
TaqI TCGA 4 cut(s) 630, 876, 1004, 1686
TaqII GACCGA 1 cut(s) 536
TatI WGTACW 2 cut(s) 360, 1413
TauI GCSGC 3 cut(s) 331, 1850, 1969
TfiI GAWTC 5 cut(s) 548, 956, 1006, 1127, 1148
Tru1I TTAA 3 cut(s) 510, 1439, 1640
Tru9I TTAA 3 cut(s) 510, 1439, 1640
TscAI CASTG 4 cut(s) 91, 1186, 1750, 1791
TseFI GTSAC 2 cut(s) 637, 1808
Tsp45I GTSAC 2 cut(s) 637, 1808
TspDTI ATGAA 7 cut(s) 468, 1044, 1107, 1111, 1812, 1848, 1998
TspRI CASTG 4 cut(s) 91, 1186, 1750, 1791
Tth111I GACNNNGTC 1 cut(s) 523
Van91I CCANNNNNTGG 1 cut(s) 985
VpaK11BI GGWCC 1 cut(s) 892
XapI RAATTY 4 cut(s) 704, 885, 1032, 1539
XceI RCATGY 1 cut(s) 1088
XhoI CTCGAG 1 cut(s) 875
XmiI GTMKAC 3 cut(s) 630, 1347, 1736
XspI CTAG 9 cut(s) 378, 438, 768, 927, 1424, 1460, 1803, 1970, 2034
ZrmI AGTACT 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.