Rroxscaffold_1G00074120

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000360
Physical Location & Seq
Forward (+)
95055716 .. 95061043
5328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074120.1

Sequence Viewer

Length: 1395 bp
ATGACCGTTGATGGCCGTGAAAGTGCAATTGAAGCTGTCGAATCTCTTGTAGCAGGTGGTGGAACTGACGTTGCAGAAGGACTCAGAAAAGGAACACAAGTCCTTGAAGATCGGAGGCAAAGGAACCCAGTTGCTAGCATCATTCTCTTATCCGATGGCCAAGATAACTACTGTCGAAGCCCAAGCCAAATGTTGAAGAAATTGCCTGCTTCAATTCGTTCCAGCGACATGCAACATGAAATCCCTGTCCACACATTTGGGTTCGGCAACGACCATGATGCAAAGATTATGCATGCTATATCTGAGGAATCCCGGGGCACCTTTTCATACATTGAATCAGTTGGCATGATACAAGACGCCTTTGCTCTGTGCATTGGTGGTCTTCTCAGTGTTGTGGCTCAGGAACTTCGCCTCACAGTGAGGTCAGCATCACATGGAGCTAAGATTGTATCAATACCATCAGGGAGATATGTGAGTCAGATTTCTGATGACGGCTCGCAAGGTTTAGTTGATATTGGAAATATGTACGCAGAAGAGGTGAAACAATTTCTGGTGTATCTCTTGGTTCCACAATCCTCAGCTTCAGAGACTAAGACATCACTGATGGACGTCTTATGCGTGTACAGAGATCTAGCTTCAAATGAGTTTATCCAGCTCCAAAGTGAGAGAGTAGAGATATCAAGACCTGAGTTTTGTTCTCCTACAGAATTGGCAGTGTGTTTGGAGGTTGATCGCCAGCGGAACAGACTTTTGGTGGCTGATGCTATTGGAGAGGCTCAACGCTTGGCTGAAATGGGAAATTTGGAGGGTGCACGCGAAATTTTGACTCAACGAAGAGAAACTCTCTTAGCATCAGCAGCAGCCAAAGCTGGGGATAGTCTCAGTAATATGTTTGAAACTGAGCTTAAAGAAATCAGGGATAAAATGGCAAGTATGAAGTTGTACGAAGAGGCGGGGCGTGCTTATGCTCTGGCTGGAATGAGTTCACATTCACGGCAGAGAGCCTCTGCTAGGGGTAACGCAGAAGGCTCGTGCCTGGCCATGAAGGGTCGCAAACAACTTGCTACAAAAGCAGCGGGTCGTGCTTCCGGGGGTCGCGGTGGAGCACCGACTCTTGCTGCCGGGGGTATTGGTGGCAAGGGTGGTCCCAAAGGCAAACGCTCTGCAATGGATCACTCAGTGGCTGCTATGGGAGACTCTGATGAAGATGATGATATGGGCTTTGCTTTATTTGACGGAGGTTCATTTGACGGAGGCAATGATGTCCATCGAGGTGCTTTTGAAACACCAGCAATGATTGAGAACATGAGAACTAAGCAGGCTCCTCAACTTGTAATTTGGCTCCTCAACTTGTATTTTGTTTGCGGTGACAGTGGGTTATCATGTTTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA VWA_3 Vwaint zf-RING_11

Protein Analysis

464

Amino Acids

49.81

Weight (kDa)

5.47

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA PF00092 6 - 115 4.4e-09 von Willebrand factor type A domain
VWA_3 PF13768 7 - 108 4.6e-08 von Willebrand factor type A domain
WAV3_C PF25243 243 - 309 6.5e-06 E3 ubiquitin-protein ligase WAV3-like, C-terminal domain
Vwaint PF14624 298 - 340 6.6e-10 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 44
AatII GACGTC 1 cut(s) 612
Acc36I ACCTGC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 317
AccII CGCG 2 cut(s) 816, 1098
AciI CCGC 5 cut(s) 739, 953, 1076, 1098, 1365
AclWI GGATC 1 cut(s) 1179
AcoI YGGCCR 3 cut(s) 13, 157, 1038
AcsI RAATTY 2 cut(s) 799, 819
AcuI CTGAAG 1 cut(s) 567
AcyI GRCGYC 2 cut(s) 357, 609
AdeI CACNNNGTG 1 cut(s) 1180
AfaI GTAC 3 cut(s) 527, 623, 944
AfiI CCNNNNNNNGG 2 cut(s) 870, 1011
AgsI TTSAA 8 cut(s) 32, 107, 196, 213, 335, 639, 896, 1283
AjnI CCWGG 1 cut(s) 1035
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
AluBI AGCT 7 cut(s) 35, 440, 581, 635, 655, 869, 904
AluI AGCT 7 cut(s) 35, 440, 581, 635, 655, 869, 904
Alw21I GWGCWC 2 cut(s) 814, 1108
Alw26I GTCTC 3 cut(s) 581, 884, 1188
Alw44I GTGCAC 1 cut(s) 810
AlwI GGATC 1 cut(s) 1179
AlwNI CAGNNNCTG 1 cut(s) 1184
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 3 cut(s) 13, 157, 1038
ApaLI GTGCAC 1 cut(s) 810
ApeKI GCWGC 5 cut(s) 857, 860, 1073, 1118, 1184
ApoI RAATTY 2 cut(s) 799, 819
ArsI GACNNNNNNTTYG 2 cut(s) 675, 707
Asp700I GAANNNNTTC 1 cut(s) 982
AspS9I GGNCC 1 cut(s) 1145
AsuC2I CCSGG 4 cut(s) 313, 314, 1090, 1123
AsuHPI GGTGA 2 cut(s) 550, 1379
AsuNHI GCTAGC 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 312
AvaII GGWCC 1 cut(s) 1145
BaeGI GKGCMC 2 cut(s) 320, 814
BalI TGGCCA 2 cut(s) 159, 1040
BanI GGYRCC 1 cut(s) 317
BauI CACGAG 1 cut(s) 1030
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 2 cut(s) 814, 1108
BbvCI CCTCAGC 1 cut(s) 577
BbvI GCAGC 5 cut(s) 869, 872, 1085, 1105, 1171
BccI CCATC 5 cut(s) 5, 149, 466, 598, 1275
BceAI ACGGC 2 cut(s) 508, 1010
BcgI CGANNNNNNTGC 4 cut(s) 260, 294, 1011, 1045
BciT130I CCWGG 1 cut(s) 1037
BcnI CCSGG 4 cut(s) 313, 314, 1090, 1123
BcoDI GTCTC 3 cut(s) 581, 884, 1188
BfaI CTAG 3 cut(s) 135, 632, 1011
BfmI CTRYAG 1 cut(s) 702
BfuAI ACCTGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 628
BisI GCNGC 5 cut(s) 858, 861, 1074, 1119, 1185
BlsI GCNGC 5 cut(s) 859, 862, 1075, 1120, 1186
Bme1390I CCNGG 5 cut(s) 313, 314, 1037, 1090, 1123
Bme18I GGWCC 1 cut(s) 1145
BmeT110I CYCGRG 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 1145
BmiI GGNNCC 6 cut(s) 125, 319, 567, 1147, 1323, 1343
BmrFI CCNGG 5 cut(s) 313, 314, 1037, 1090, 1123
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 5 cut(s) 147, 268, 437, 751, 860
BmtI GCTAGC 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 374
BplI GAGNNNNNCTC 2 cut(s) 828, 860
Bpu10I CCTNAGC 2 cut(s) 399, 577
BpuMI CCSGG 4 cut(s) 313, 314, 1090, 1123
BsaBI GATNNNNATC 1 cut(s) 1266
BsaHI GRCGYC 2 cut(s) 357, 609
BsaJI CCNNGG 4 cut(s) 312, 313, 1089, 1122
Bsc4I CCNNNNNNNGG 2 cut(s) 870, 1011
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 3 cut(s) 1173, 1264, 1299
Bse8I GATNNNNATC 1 cut(s) 1266
BseBI CCWGG 1 cut(s) 1037
BseDI CCNNGG 4 cut(s) 312, 313, 1089, 1122
BseJI GATNNNNATC 1 cut(s) 1266
BseLI CCNNNNNNNGG 2 cut(s) 870, 1011
BseMI GCAATG 3 cut(s) 1173, 1264, 1299
BseMII CTCAG 9 cut(s) 97, 294, 400, 413, 591, 678, 891, 895, 1191
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 2 cut(s) 1314, 1334
BseSI GKGCMC 2 cut(s) 320, 814
BseXI GCAGC 5 cut(s) 869, 872, 1085, 1105, 1171
BseYI CCCAGC 1 cut(s) 869
Bsh1236I CGCG 2 cut(s) 816, 1098
BshFI GGCC 3 cut(s) 15, 159, 1040
BshNI GGYRCC 1 cut(s) 317
BsiHKAI GWGCWC 2 cut(s) 814, 1108
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 3 cut(s) 313, 1089, 1122
BslFI GGGAC 1 cut(s) 1131
BslI CCNNNNNNNGG 2 cut(s) 870, 1011
BsmAI GTCTC 3 cut(s) 581, 884, 1188
BsmFI GGGAC 1 cut(s) 1131
BsnI GGCC 3 cut(s) 15, 159, 1040
BsoBI CYCGRG 1 cut(s) 312
Bsp1286I GDGCHC 3 cut(s) 320, 814, 1108
Bsp1407I TGTACA 1 cut(s) 621
Bsp143I GATC 4 cut(s) 109, 628, 730, 1171
BspACI CCGC 5 cut(s) 739, 953, 1076, 1098, 1365
BspANI GGCC 3 cut(s) 15, 159, 1040
BspCNI CTCAG 9 cut(s) 96, 295, 399, 412, 590, 679, 892, 894, 1190
BspFNI CGCG 2 cut(s) 816, 1098
BspLI GGNNCC 6 cut(s) 125, 319, 567, 1147, 1323, 1343
BspMI ACCTGC 1 cut(s) 44
BspOI GCTAGC 1 cut(s) 138
BspPI GGATC 1 cut(s) 1179
BspT107I GGYRCC 1 cut(s) 317
BsrDI GCAATG 3 cut(s) 1173, 1264, 1299
BsrGI TGTACA 1 cut(s) 621
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 4 cut(s) 312, 313, 1089, 1122
BssMI GATC 4 cut(s) 109, 628, 730, 1171
BssNI GRCGYC 2 cut(s) 357, 609
BssSI CACGAG 1 cut(s) 1030
Bst2BI CACGAG 1 cut(s) 1030
Bst2UI CCWGG 1 cut(s) 1037
Bst4CI ACNGT 4 cut(s) 7, 173, 418, 1373
Bst6I CTCTTC 3 cut(s) 528, 829, 942
BstACI GRCGYC 2 cut(s) 357, 609
BstAUI TGTACA 1 cut(s) 621
BstC8I GCNNGC 8 cut(s) 136, 207, 294, 497, 737, 814, 960, 1320
BstENI CCTNNNNNAGG 1 cut(s) 1009
BstFNI CGCG 2 cut(s) 816, 1098
BstKTI GATC 4 cut(s) 112, 631, 733, 1174
BstMAI GTCTC 3 cut(s) 581, 884, 1188
BstMBI GATC 4 cut(s) 109, 628, 730, 1171
BstMWI GCNNNNNNNGC 6 cut(s) 32, 857, 866, 959, 1070, 1082
BstNI CCWGG 1 cut(s) 1037
BstNSI RCATGY 2 cut(s) 232, 296
BstSCI CCNGG 5 cut(s) 311, 312, 1035, 1088, 1121
BstSFI CTRYAG 1 cut(s) 702
BstSLI GKGCMC 2 cut(s) 320, 814
BstUI CGCG 2 cut(s) 816, 1098
BstV1I GCAGC 5 cut(s) 869, 872, 1085, 1105, 1171
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 628
BstXI CCANNNNNNTGG 1 cut(s) 257
BstYI RGATCY 1 cut(s) 628
BsuRI GGCC 3 cut(s) 15, 159, 1040
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 6 cut(s) 394, 423, 599, 720, 1185, 1378
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 8 cut(s) 136, 207, 294, 497, 737, 814, 960, 1320
CaiI CAGNNNCTG 1 cut(s) 1184
Cfr13I GGNCC 1 cut(s) 1145
Cfr9I CCCGGG 1 cut(s) 312
CseI GACGC 1 cut(s) 365
Csp6I GTAC 3 cut(s) 526, 622, 943
CviAII CATG 9 cut(s) 229, 236, 275, 293, 346, 434, 1042, 1306, 1383
CviQI GTAC 3 cut(s) 526, 622, 943
DpnI GATC 4 cut(s) 111, 630, 732, 1173
DpnII GATC 4 cut(s) 109, 628, 730, 1171
DraIII CACNNNGTG 1 cut(s) 1180
EaeI YGGCCR 3 cut(s) 13, 157, 1038
Eam1104I CTCTTC 3 cut(s) 528, 829, 942
EarI CTCTTC 3 cut(s) 528, 829, 942
Eco32I GATATC 1 cut(s) 678
Eco47I GGWCC 1 cut(s) 1145
Eco57I CTGAAG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 1009
EcoRII CCWGG 1 cut(s) 1035
EcoRV GATATC 1 cut(s) 678
EcoT22I ATGCAT 1 cut(s) 294
FaeI CATG 9 cut(s) 232, 239, 278, 296, 349, 437, 1045, 1309, 1386
FaqI GGGAC 1 cut(s) 1131
FatI CATG 9 cut(s) 228, 235, 274, 292, 345, 433, 1041, 1305, 1382
FauI CCCGC 2 cut(s) 946, 1069
Fnu4HI GCNGC 5 cut(s) 858, 861, 1074, 1119, 1185
Fsp4HI GCNGC 5 cut(s) 858, 861, 1074, 1119, 1185
FspBI CTAG 3 cut(s) 135, 632, 1011
GluI GCNGC 5 cut(s) 858, 861, 1074, 1119, 1185
GsaI CCCAGC 1 cut(s) 873
HaeIII GGCC 3 cut(s) 15, 159, 1040
HapII CCGG 3 cut(s) 313, 1089, 1122
HgaI GACGC 1 cut(s) 365
Hin1I GRCGYC 2 cut(s) 357, 609
Hin1II CATG 9 cut(s) 232, 239, 278, 296, 349, 437, 1045, 1309, 1386
HinfI GANTC 8 cut(s) 41, 81, 308, 335, 475, 826, 1111, 1196
HpaII CCGG 3 cut(s) 313, 1089, 1122
HphI GGTGA 2 cut(s) 550, 1379
Hpy166II GTNNAC 4 cut(s) 250, 622, 812, 986
Hpy188I TCNGA 8 cut(s) 86, 114, 154, 304, 480, 487, 586, 1201
Hpy188III TCNNGA 2 cut(s) 401, 681
Hpy8I GTNNAC 4 cut(s) 250, 622, 812, 986
HpyAV CCTTC 3 cut(s) 71, 1019, 1039
HpyCH4III ACNGT 4 cut(s) 7, 173, 418, 1373
HpyCH4IV ACGT 2 cut(s) 69, 609
HpyCH4V TGCA 8 cut(s) 26, 74, 232, 281, 292, 372, 812, 1166
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 857, 866, 959, 1070, 1082
HpySE526I ACGT 2 cut(s) 69, 609
Hsp92I GRCGYC 2 cut(s) 357, 609
Hsp92II CATG 9 cut(s) 232, 239, 278, 296, 349, 437, 1045, 1309, 1386
Kzo9I GATC 4 cut(s) 109, 628, 730, 1171
LmnI GCTCC 5 cut(s) 437, 660, 1103, 1327, 1347
Lsp1109I GCAGC 5 cut(s) 869, 872, 1085, 1105, 1171
LweI GCATC 5 cut(s) 147, 268, 437, 751, 860
MaeI CTAG 3 cut(s) 135, 632, 1011
MaeII ACGT 2 cut(s) 69, 609
MaeIII GTNAC 2 cut(s) 1016, 1367
MalI GATC 4 cut(s) 111, 630, 732, 1173
MboI GATC 4 cut(s) 109, 628, 730, 1171
MboII GAAGA 7 cut(s) 119, 208, 374, 545, 846, 959, 1217
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 3 cut(s) 320, 814, 1108
MlsI TGGCCA 2 cut(s) 159, 1040
MluCI AATT 8 cut(s) 27, 200, 213, 545, 707, 799, 819, 1335
MluNI TGGCCA 2 cut(s) 159, 1040
MlyI GAGTC 5 cut(s) 75, 484, 820, 1105, 1190
Mox20I TGGCCA 2 cut(s) 159, 1040
Mph1103I ATGCAT 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 982
MscI TGGCCA 2 cut(s) 159, 1040
MseI TTAA 1 cut(s) 906
MslI CAYNNNNRTG 1 cut(s) 1272
Msp20I TGGCCA 2 cut(s) 159, 1040
MspA1I CMGCKG 2 cut(s) 739, 1076
MspI CCGG 3 cut(s) 313, 1089, 1122
MspR9I CCNGG 5 cut(s) 313, 314, 1037, 1090, 1123
MunI CAATTG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 1037
MvnI CGCG 2 cut(s) 816, 1098
MwoI GCNNNNNNNGC 6 cut(s) 32, 857, 866, 959, 1070, 1082
NciI CCSGG 4 cut(s) 313, 314, 1090, 1123
NdeII GATC 4 cut(s) 109, 628, 730, 1171
NheI GCTAGC 1 cut(s) 134
NlaIII CATG 9 cut(s) 232, 239, 278, 296, 349, 437, 1045, 1309, 1386
NlaIV GGNNCC 6 cut(s) 125, 319, 567, 1147, 1323, 1343
NmuCI GTSAC 1 cut(s) 1367
NsiI ATGCAT 1 cut(s) 294
NspI RCATGY 2 cut(s) 232, 296
PaeI GCATGC 1 cut(s) 296
PaqCI CACCTGC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PdmI GAANNNNTTC 1 cut(s) 982
PfeI GAWTC 3 cut(s) 41, 308, 335
PkrI GCNGC 5 cut(s) 859, 862, 1075, 1120, 1186
PleI GAGTC 5 cut(s) 75, 483, 820, 1105, 1190
PpsI GAGTC 5 cut(s) 75, 483, 820, 1105, 1190
Psp6I CCWGG 1 cut(s) 1035
PspFI CCCAGC 1 cut(s) 869
PspGI CCWGG 1 cut(s) 1035
PspN4I GGNNCC 6 cut(s) 125, 319, 567, 1147, 1323, 1343
PspPI GGNCC 1 cut(s) 1145
PstNI CAGNNNCTG 1 cut(s) 1184
PsuI RGATCY 1 cut(s) 628
RsaI GTAC 3 cut(s) 527, 623, 944
RsaNI GTAC 3 cut(s) 526, 622, 943
RseI CAYNNNNRTG 1 cut(s) 1272
SaqAI TTAA 1 cut(s) 906
SatI GCNGC 5 cut(s) 858, 861, 1074, 1119, 1185
Sau3AI GATC 4 cut(s) 109, 628, 730, 1171
Sau96I GGNCC 1 cut(s) 1145
SchI GAGTC 5 cut(s) 75, 484, 820, 1105, 1190
ScrFI CCNGG 5 cut(s) 313, 314, 1037, 1090, 1123
SduI GDGCHC 3 cut(s) 320, 814, 1108
SfaNI GCATC 5 cut(s) 147, 268, 437, 751, 860
SfcI CTRYAG 1 cut(s) 702
SinI GGWCC 1 cut(s) 1145
SmaI CCCGGG 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 1272
SphI GCATGC 1 cut(s) 296
Sse9I AATT 8 cut(s) 27, 200, 213, 545, 707, 799, 819, 1335
SsiI CCGC 5 cut(s) 739, 953, 1076, 1098, 1365
SspMI CTAG 3 cut(s) 135, 632, 1011
StyD4I CCNGG 5 cut(s) 311, 312, 1035, 1088, 1121
TaaI ACNGT 4 cut(s) 7, 173, 418, 1373
TaiI ACGT 2 cut(s) 72, 612
TaqI TCGA 3 cut(s) 39, 175, 1270
TasI AATT 8 cut(s) 27, 200, 213, 545, 707, 799, 819, 1335
TatI WGTACW 1 cut(s) 621
TfiI GAWTC 3 cut(s) 41, 308, 335
Tru1I TTAA 1 cut(s) 906
Tru9I TTAA 1 cut(s) 906
TscAI CASTG 6 cut(s) 394, 423, 606, 720, 1185, 1378
TseFI GTSAC 1 cut(s) 1367
TseI GCWGC 5 cut(s) 857, 860, 1073, 1118, 1184
Tsp45I GTSAC 1 cut(s) 1367
TspDTI ATGAA 6 cut(s) 252, 315, 950, 1058, 1218, 1233
TspGWI ACGGA 2 cut(s) 1251, 1266
TspMI CCCGGG 1 cut(s) 312
TspRI CASTG 6 cut(s) 394, 423, 606, 720, 1185, 1378
VneI GTGCAC 1 cut(s) 810
VpaK11BI GGWCC 1 cut(s) 1145
XagI CCTNNNNNAGG 1 cut(s) 1009
XapI RAATTY 2 cut(s) 799, 819
XceI RCATGY 2 cut(s) 232, 296
XmaI CCCGGG 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 982
XspI CTAG 3 cut(s) 135, 632, 1011
ZraI GACGTC 1 cut(s) 610
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.