RLG00000032419

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000360
Physical Location & Seq
Forward (+)
15018894 .. 15019906
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032419

Sequence Viewer

Length: 990 bp
ATGGGGACTTCGGACAGACTGTCTATAGTATCATTCTCAACAACTTCTAAACGACTCCTTCCTCTCCGTAGAATGACTGTTAAGGGCCGTGAAAGTGCAATCCAAGCTGTCGAATCTCTTAGAGCCGCAGATGGTGGAACTGACATTGCAGAAGGACTCAAGATAGGAACTCATATCCTTGAGGAGCGAAGGGAAAGGAACCCTGTTGCTAGCATCATCCTCTTATCGGATGGCCAAGATAGCTACTGTGACAACCCAAGCCAAATGTTGAAGAAATTGCCTGCTTCAATTCGTTCTAGTAACATGCAACATGAAATCCCAGTCCACACATTTGGGTTTGGCAATGACCATGATGCAAACATTATGCATGCTATATCTGCTGCATCAGGGGGAACGTTTTCGAACATTGAATCAGTTGGCATAATACAAGACGCTTTTGCTCTGTGCATTGGTGGACTTCGCCTGACGGTGAGGTCAGCATCACCTGGGGTGAAGATCGTAGAAATACCATCAGGGAGACATGTCAGTCAGATTTCTGATGAGCAAGGAGTTGTTGATGTTGGAAATATGTATGCAGAAGAGGATAAACAGTTTCTGGTGTACCTCTCAGTTCCACAATCCGCAGCTCCAGATACCAAGACGTCTTTGGTAGACGTTTTACGCGTGTACAGAGATCTTGGTTCAGATGAGTTTATCCCGGTCCAAGGTGAGAAAGTAGAGATAACGAGACCTGATTTTTGTTCTCCTGCAGAAATGGCAGTGTCTTTGGAGGTTGATCGGCAGCGGAACAGACTTTTGGTGGCTGATGCTATTAGAGAGGCACAAAGGTTGGCTGAAATGGGCAATCTGGAGGCTGCACGGTCGGTTTTGACTCAGCGAAGAGAAACTCTATTGACATCAACAGCAGCCAAAGCTGGGGATGATCTGAGTCATATGTTTGAAACTGAGCTTAAACAAATCATGGATAAAATGGCAAGTATGAATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

330

Amino Acids

35.9

Weight (kDa)

5.38

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA_3 PF13768 2 - 133 1.3e-11 von Willebrand factor type A domain
VWA PF00092 4 - 142 4.7e-14 von Willebrand factor type A domain
VWA_2 PF13519 4 - 79 7e-10 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 472, 525
AatII GACGTC 1 cut(s) 644
AccI GTMKAC 1 cut(s) 651
AccII CGCG 1 cut(s) 663
AciI CCGC 3 cut(s) 126, 621, 784
AclI AACGTT 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 1 cut(s) 982
AcyI GRCGYC 1 cut(s) 641
AfaI GTAC 2 cut(s) 602, 668
AfiI CCNNNNNNNGG 3 cut(s) 226, 704, 915
AflIII ACRYGT 2 cut(s) 520, 661
AgsI TTSAA 4 cut(s) 271, 288, 410, 941
AhdI GACNNNNNGTC 1 cut(s) 19
AjnI CCWGG 1 cut(s) 484
AjuI GAANNNNNNNTTGG 2 cut(s) 779, 811
AluBI AGCT 5 cut(s) 107, 243, 626, 914, 949
AluI AGCT 5 cut(s) 107, 243, 626, 914, 949
Alw26I GTCTC 2 cut(s) 511, 721
AlwNI CAGNNNCTG 1 cut(s) 595
AoxI GGCC 2 cut(s) 85, 232
ApeKI GCWGC 5 cut(s) 380, 623, 781, 854, 905
ApoI RAATTY 1 cut(s) 982
ArsI GACNNNNNNTTYG 2 cut(s) 720, 752
Asp700I GAANNNNTTC 1 cut(s) 397
AspS9I GGNCC 2 cut(s) 85, 700
AsuC2I CCSGG 1 cut(s) 698
AsuHPI GGTGA 4 cut(s) 474, 481, 502, 719
AsuII TTCGAA 1 cut(s) 401
AsuNHI GCTAGC 1 cut(s) 209
AvaII GGWCC 1 cut(s) 700
BalI TGGCCA 1 cut(s) 234
BbvI GCAGC 5 cut(s) 367, 635, 793, 841, 917
BccI CCATC 3 cut(s) 125, 224, 517
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 486
BcnI CCSGG 1 cut(s) 698
BcoDI GTCTC 2 cut(s) 511, 721
BfaI CTAG 2 cut(s) 210, 297
BfmI CTRYAG 2 cut(s) 24, 747
BglII AGATCT 1 cut(s) 673
BisI GCNGC 6 cut(s) 126, 381, 624, 782, 855, 906
BlsI GCNGC 6 cut(s) 127, 382, 625, 783, 856, 907
Bme1390I CCNGG 2 cut(s) 486, 698
Bme18I GGWCC 1 cut(s) 700
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 85, 700
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 486, 698
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 5 cut(s) 222, 343, 392, 488, 796
BmtI GCTAGC 1 cut(s) 213
BmuI ACTGGG 1 cut(s) 314
BpmI CTGGAG 2 cut(s) 612, 869
Bpu14I TTCGAA 1 cut(s) 401
BpuEI CTTGAG 2 cut(s) 143, 200
BpuMI CCSGG 1 cut(s) 698
BsaHI GRCGYC 1 cut(s) 641
BsaI GGTCTC 1 cut(s) 721
BsaJI CCNNGG 2 cut(s) 485, 703
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 704, 915
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 2 cut(s) 144, 349
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 485, 703
BseGI GGATG 3 cut(s) 216, 235, 925
BseLI CCNNNNNNNGG 3 cut(s) 226, 704, 915
BseMI GCAATG 2 cut(s) 144, 349
BseMII CTCAG 4 cut(s) 621, 887, 917, 936
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 5 cut(s) 367, 635, 793, 841, 917
BseYI CCCAGC 1 cut(s) 914
BsgI GTGCAG 1 cut(s) 840
Bsh1236I CGCG 1 cut(s) 663
Bsh1285I CGRYCG 1 cut(s) 863
BshFI GGCC 2 cut(s) 87, 234
BsiEI CGRYCG 1 cut(s) 863
BsiSI CCGG 1 cut(s) 698
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 3 cut(s) 226, 704, 915
BsmAI GTCTC 2 cut(s) 511, 721
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 2 cut(s) 87, 234
Bso31I GGTCTC 1 cut(s) 721
Bsp119I TTCGAA 1 cut(s) 401
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 4 cut(s) 495, 673, 775, 922
BspACI CCGC 3 cut(s) 126, 621, 784
BspANI GGCC 2 cut(s) 87, 234
BspCNI CTCAG 4 cut(s) 620, 886, 918, 937
BspFNI CGCG 1 cut(s) 663
BspLI GGNNCC 1 cut(s) 200
BspMAI CTGCAG 1 cut(s) 751
BspOI GCTAGC 1 cut(s) 213
BspT104I TTCGAA 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 721
BsrDI GCAATG 2 cut(s) 144, 349
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 485, 703
BssMI GATC 4 cut(s) 495, 673, 775, 922
BssNI GRCGYC 1 cut(s) 641
BssT1I CCWWGG 1 cut(s) 703
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 6 cut(s) 21, 79, 248, 469, 591, 861
Bst6I CTCTTC 2 cut(s) 573, 874
BstACI GRCGYC 1 cut(s) 641
BstAUI TGTACA 1 cut(s) 666
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 3 cut(s) 211, 282, 369
BstDEI CTNAG 5 cut(s) 119, 607, 873, 926, 945
BstF5I GGATG 3 cut(s) 216, 235, 925
BstFNI CGCG 1 cut(s) 663
BstKTI GATC 4 cut(s) 498, 676, 778, 925
BstMAI GTCTC 2 cut(s) 511, 721
BstMBI GATC 4 cut(s) 495, 673, 775, 922
BstMCI CGRYCG 1 cut(s) 863
BstMWI GCNNNNNNNGC 5 cut(s) 104, 240, 377, 755, 911
BstNI CCWGG 1 cut(s) 486
BstNSI RCATGY 3 cut(s) 307, 371, 524
BstSCI CCNGG 2 cut(s) 484, 696
BstSFI CTRYAG 2 cut(s) 24, 747
BstUI CGCG 1 cut(s) 663
BstV1I GCAGC 5 cut(s) 367, 635, 793, 841, 917
BstX2I RGATCY 1 cut(s) 673
BstXI CCANNNNNNTGG 1 cut(s) 332
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 2 cut(s) 87, 234
BtsCI GGATG 3 cut(s) 216, 235, 925
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 1 cut(s) 765
Cac8I GCNNGC 3 cut(s) 211, 282, 369
CaiI CAGNNNCTG 1 cut(s) 595
Cfr13I GGNCC 2 cut(s) 85, 700
CseI GACGC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 601, 667
CviAII CATG 6 cut(s) 304, 311, 350, 368, 521, 961
CviQI GTAC 2 cut(s) 601, 667
DdeI CTNAG 5 cut(s) 119, 607, 873, 926, 945
DpnI GATC 4 cut(s) 497, 675, 777, 924
DpnII GATC 4 cut(s) 495, 673, 775, 922
DrdI GACNNNNNNGTC 2 cut(s) 472, 525
DriI GACNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 2 cut(s) 472, 525
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 573, 874
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 2 cut(s) 573, 874
Eco130I CCWWGG 1 cut(s) 703
Eco31I GGTCTC 1 cut(s) 721
Eco47I GGWCC 1 cut(s) 700
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 703
EcoT22I ATGCAT 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 703
FaeI CATG 6 cut(s) 307, 314, 353, 371, 524, 964
FaqI GGGAC 1 cut(s) 19
FatI CATG 6 cut(s) 303, 310, 349, 367, 520, 960
FauNDI CATATG 1 cut(s) 933
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 6 cut(s) 126, 381, 624, 782, 855, 906
FokI GGATG 3 cut(s) 203, 242, 932
Fsp4HI GCNGC 6 cut(s) 126, 381, 624, 782, 855, 906
FspBI CTAG 2 cut(s) 210, 297
GluI GCNGC 6 cut(s) 126, 381, 624, 782, 855, 906
GsaI CCCAGC 1 cut(s) 918
GsuI CTGGAG 2 cut(s) 612, 869
HaeIII GGCC 2 cut(s) 87, 234
HapII CCGG 1 cut(s) 698
HgaI GACGC 1 cut(s) 440
Hin1I GRCGYC 1 cut(s) 641
Hin1II CATG 6 cut(s) 307, 314, 353, 371, 524, 964
HinfI GANTC 6 cut(s) 54, 113, 156, 410, 871, 928
HpaII CCGG 1 cut(s) 698
HphI GGTGA 4 cut(s) 474, 481, 502, 719
Hpy166II GTNNAC 5 cut(s) 325, 455, 601, 652, 667
Hpy188I TCNGA 6 cut(s) 13, 229, 531, 538, 685, 927
Hpy188III TCNNGA 3 cut(s) 160, 629, 848
Hpy8I GTNNAC 5 cut(s) 325, 455, 601, 652, 667
HpyAV CCTTC 3 cut(s) 68, 146, 183
HpyCH4III ACNGT 6 cut(s) 21, 79, 248, 469, 591, 861
HpyCH4IV ACGT 3 cut(s) 395, 641, 654
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 240, 377, 755, 911
HpyF3I CTNAG 5 cut(s) 119, 607, 873, 926, 945
HpySE526I ACGT 3 cut(s) 395, 641, 654
Hsp92I GRCGYC 1 cut(s) 641
Hsp92II CATG 6 cut(s) 307, 314, 353, 371, 524, 964
Kzo9I GATC 4 cut(s) 495, 673, 775, 922
LmnI GCTCC 2 cut(s) 184, 631
Lsp1109I GCAGC 5 cut(s) 367, 635, 793, 841, 917
LweI GCATC 5 cut(s) 222, 343, 392, 488, 796
MaeI CTAG 2 cut(s) 210, 297
MaeII ACGT 3 cut(s) 395, 641, 654
MaeIII GTNAC 2 cut(s) 248, 299
MalI GATC 4 cut(s) 497, 675, 777, 924
MboI GATC 4 cut(s) 495, 673, 775, 922
MboII GAAGA 4 cut(s) 283, 505, 590, 891
MflI RGATCY 1 cut(s) 673
MlsI TGGCCA 1 cut(s) 234
MluCI AATT 3 cut(s) 275, 288, 982
MluI ACGCGT 1 cut(s) 661
MluNI TGGCCA 1 cut(s) 234
MlyI GAGTC 4 cut(s) 48, 150, 865, 937
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 9 cut(s) 72, 175, 230, 465, 574, 614, 763, 811, 844
Mox20I TGGCCA 1 cut(s) 234
Mph1103I ATGCAT 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 397
MscI TGGCCA 1 cut(s) 234
MseI TTAA 2 cut(s) 81, 951
Msp20I TGGCCA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 784
MspI CCGG 1 cut(s) 698
MspR9I CCNGG 2 cut(s) 486, 698
MvaI CCWGG 1 cut(s) 486
MvnI CGCG 1 cut(s) 663
MwoI GCNNNNNNNGC 5 cut(s) 104, 240, 377, 755, 911
NciI CCSGG 1 cut(s) 698
NdeI CATATG 1 cut(s) 933
NdeII GATC 4 cut(s) 495, 673, 775, 922
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 6 cut(s) 307, 314, 353, 371, 524, 964
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 248
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 3 cut(s) 307, 371, 524
NspV TTCGAA 1 cut(s) 401
PaeI GCATGC 1 cut(s) 371
PciI ACATGT 1 cut(s) 520
PcsI WCGNNNNNNNCGW 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 397
PfeI GAWTC 2 cut(s) 113, 410
PkrI GCNGC 6 cut(s) 127, 382, 625, 783, 856, 907
PleI GAGTC 4 cut(s) 48, 150, 865, 936
PpsI GAGTC 4 cut(s) 48, 150, 865, 936
PscI ACATGT 1 cut(s) 520
Psp1406I AACGTT 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 484
PspFI CCCAGC 1 cut(s) 914
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 2 cut(s) 85, 700
PstI CTGCAG 1 cut(s) 751
PstNI CAGNNNCTG 1 cut(s) 595
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 2 cut(s) 602, 668
RsaNI GTAC 2 cut(s) 601, 667
SaqAI TTAA 2 cut(s) 81, 951
SatI GCNGC 6 cut(s) 126, 381, 624, 782, 855, 906
Sau3AI GATC 4 cut(s) 495, 673, 775, 922
Sau96I GGNCC 2 cut(s) 85, 700
SchI GAGTC 4 cut(s) 48, 150, 865, 937
ScrFI CCNGG 2 cut(s) 486, 698
SfaNI GCATC 5 cut(s) 222, 343, 392, 488, 796
SfcI CTRYAG 2 cut(s) 24, 747
SfuI TTCGAA 1 cut(s) 401
SinI GGWCC 1 cut(s) 700
SmlI CTYRAG 2 cut(s) 158, 179
SmoI CTYRAG 2 cut(s) 158, 179
SphI GCATGC 1 cut(s) 371
Sse9I AATT 3 cut(s) 275, 288, 982
SsiI CCGC 3 cut(s) 126, 621, 784
SspMI CTAG 2 cut(s) 210, 297
StyD4I CCNGG 2 cut(s) 484, 696
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 6 cut(s) 21, 79, 248, 469, 591, 861
TaiI ACGT 3 cut(s) 398, 644, 657
TaqI TCGA 2 cut(s) 111, 401
TasI AATT 3 cut(s) 275, 288, 982
TatI WGTACW 1 cut(s) 666
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 2 cut(s) 113, 410
Tru1I TTAA 2 cut(s) 81, 951
Tru9I TTAA 2 cut(s) 81, 951
TscAI CASTG 1 cut(s) 765
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 5 cut(s) 380, 623, 781, 854, 905
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 327
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 765
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 1 cut(s) 982
XceI RCATGY 3 cut(s) 307, 371, 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
XmiI GTMKAC 1 cut(s) 651
XmnI GAANNNNTTC 1 cut(s) 397
XspI CTAG 2 cut(s) 210, 297
ZraI GACGTC 1 cut(s) 642
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.