FvH4_3g11740

VWA / Hh protein intein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000360
Physical Location & Seq
Forward (+)
6934034 .. 6937457
3424 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11740.t1

Sequence Viewer

Length: 1896 bp
ATGGGGAATGTGTTCAAGAAGCTGAAGAAGGCTCTCACTCCCAAGCTCGGCTGCGACTCCTCCTCCACCGCAAAGTCTGTGCTACAGCCACGCCCCGCCGCGGAATCGTACTCCGGAACGGCGTCGTCTGACTTCTCCTCAACCTCGTCCAACTCCTCTCTCGAGAAATGTTGCGCCATTTGCCTGAGTAACGTGAAAAGAGGGCAAGGTCATGCAATCTTCACCGCTGTGTGTTCCCACTCTTTCCACTTCGACTGCATTGCCAAGAACGTCGAGCATGGAAATCTTTGTTGCCCCATCTGCCGGGCCACATGGGATATAAATAATGTACCGTTCCATGCTCCCAATAATAGTGTGAATCCTCAGCGAAACTACTTGGGCAGGGTCCATCCTCATCCTGAGCCACTTACATTCTCTGATGATGAGGCTTTACTTACCAGCTCTCCTACTCAGTCACTGATCTCCCAGGGTATGACAATTAAGATTCACACAGAGTCACCTGCAATCTCTTCTTCAGAATCACGCCAAAATTTTCCTGTGCTTGTCAGCATTTGTGCACCACCTCTTGAGGGCCCTAATGGAAACGGCCGTACACCCATTGACCTTGTGACGGTTCTGGATGTCAGTAGAAGCATGGAAGGTACAAAGTTTTCCCTTCTCAAGCAAGCTATCAAATTTGTCATACAAAACTTGGGGCCTTCAGACCGGCTGTCTATAGTATCATTCTCAAAAACTGCTAGAAGAGTCTTTCCTCTGAGAAGAATGTCTGATGCTGGTCGAGAAAGTGCCATCCTCGCTGTTGAATCTCTTAGATCAAATGCTGAAACTAACATTGCGGAAGGTATCAAGAAAGGAGCTCGAGTCCTCAAAGAACGAAGGGAAAGGAACCCATTTGCTAGCATCATGCTGTTATCTGATGGCATGGATACATATGCAAGCCAACTGATGAATCAATTGCCTGCCTCCATTTGTTCTAGCGAAACAGAACATGGAATTCCGGTCCACACATTCGGGTTTGGCAAGGACCATTGTCCAACCACATTGCATGCTATATCTAATGCATCAGGCGGCACCTTTTCCTTCATCGAATCAGTTGAGATGATACAAGATTCCTTTGCTCTGTGCATTGGGGGTCTTCTTAGTGTTGTGGCTCAGGAGGTTCGCCTAACTGTAAGGTCAGCTTCAAGTGGGGTGAAGATTGTGTCGATACCATCTGGGAGACATGTGAATGAGATTTCTGATGAGGGTCAGCAAGGAGTTGTTCATCTTGGAAATATGTATGCTGAAGAGGACAAACAATTTCTGGTGTACCTCTTAGTCCCAGAATCCTCAGCTCCACATACTAAGACCTCAGTGTTGGAAGCGTTATGCACTTACAAAGATCCAGCTTCAAATGAGTTGATGCAAGTGCGATGTGAGAAAGTAGAGATACTGAGACCCGAGGTTTGTTCTCCAGCTGAAAAGGCAGTGTGCTTGGAGGTTGATCGACAGCGCAACAGAGTTTCAGTCGTTGAAGCTATTGCAGAGGCACAACGGATGGCTGAGATGGGTAATCTGGAGGGTGCAAAGGCGACTTTGGCTCAGGAAAGATCAACTCTCTTGACATCACCAGCCGCCCAAGCTGGGGATAGCCTCACTACTTTGCTTGAAGCTCAGCTCACTGAAGTCATTTACAGAATGACAACAATAGAGTTGTATACACAGATCGGCCGTGCATACACTCTCTCAGAAATGAGCTCTCACTCATTGCAAAGGGCCGCAGCTAGTGGTGACTTGACAACCTGGAGTCTCATCATGAGAGCAGGTGGACACTCTGCCACCAATTCTGGTGTGTTTGAAACACCTAATATGAGCAGAATGCTGAGGCTATCGCACAATCTTGGGACTAATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA VWA_3 Vwaint zf-RING_11

Protein Analysis

632

Amino Acids

68.26

Weight (kDa)

6.81

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_11 PF17123 58 - 87 1.5e-08 RING-like zinc finger
VWA PF00092 201 - 366 1.8e-21 von Willebrand factor type A domain
VWA_3 PF13768 201 - 361 2.9e-18 von Willebrand factor type A domain
VWA_2 PF13519 202 - 307 2.7e-16 von Willebrand factor type A domain
WAV3_C PF25243 494 - 560 5.6e-06 E3 ubiquitin-protein ligase WAV3-like, C-terminal domain
Vwaint PF14624 548 - 620 1.3e-07 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 508, 1793
Acc36I ACCTGC 2 cut(s) 508, 1793
AccB1I GGYRCC 1 cut(s) 1070
AccI GTMKAC 1 cut(s) 1697
AccII CGCG 1 cut(s) 101
AccIII TCCGGA 1 cut(s) 113
AciI CCGC 9 cut(s) 69, 96, 99, 101, 225, 836, 1068, 1614, 1758
AclWI GGATC 1 cut(s) 1376
AcoI YGGCCR 2 cut(s) 586, 1708
AcsI RAATTY 3 cut(s) 529, 674, 993
AcuI CTGAAG 5 cut(s) 44, 498, 684, 1305, 1683
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 5 cut(s) 110, 330, 592, 643, 1310
AfiI CCNNNNNNNGG 7 cut(s) 47, 100, 303, 569, 610, 1623, 1624
AflIII ACRYGT 1 cut(s) 1222
AgsI TTSAA 7 cut(s) 16, 803, 1185, 1392, 1514, 1649, 1838
AhdI GACNNNNNGTC 1 cut(s) 709
AjnI CCWGG 2 cut(s) 465, 1781
AleI CACNNNNGTG 1 cut(s) 227
Alw21I GWGCWC 3 cut(s) 559, 859, 1739
Alw26I GTCTC 3 cut(s) 1213, 1429, 1793
Alw44I GTGCAC 1 cut(s) 555
AlwI GGATC 1 cut(s) 1376
AlwNI CAGNNNCTG 1 cut(s) 457
Ama87I CYCGRG 3 cut(s) 161, 858, 1439
Aor13HI TCCGGA 1 cut(s) 113
AoxI GGCC 6 cut(s) 306, 571, 586, 695, 1708, 1755
ApaI GGGCCC 1 cut(s) 575
ApaLI GTGCAC 1 cut(s) 555
ApeKI GCWGC 2 cut(s) 51, 1760
ApoI RAATTY 3 cut(s) 529, 674, 993
ArsI GACNNNNNNTTYG 2 cut(s) 1428, 1460
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 2 cut(s) 176, 1494
AspS9I GGNCC 8 cut(s) 306, 385, 571, 572, 695, 1000, 1024, 1755
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 5 cut(s) 214, 489, 1204, 1599, 1781
AsuNHI GCTAGC 1 cut(s) 896
AvaI CYCGRG 3 cut(s) 161, 858, 1439
AvaII GGWCC 3 cut(s) 385, 1000, 1024
BaeGI GKGCMC 2 cut(s) 559, 575
BanI GGYRCC 1 cut(s) 1070
BanII GRGCYC 3 cut(s) 575, 859, 1739
BbsI GAAGAC 1 cut(s) 1127
Bbv12I GWGCWC 3 cut(s) 559, 859, 1739
BbvCI CCTCAGC 3 cut(s) 363, 1330, 1862
BbvI GCAGC 2 cut(s) 38, 1772
BccI CCATC 7 cut(s) 305, 396, 797, 911, 1219, 1531, 1540
BceAI ACGGC 4 cut(s) 135, 573, 601, 1695
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciT130I CCWGG 2 cut(s) 467, 1783
BciVI GTATCC 1 cut(s) 919
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 3 cut(s) 1213, 1429, 1793
BfaI CTAG 4 cut(s) 738, 897, 975, 1764
BfmI CTRYAG 2 cut(s) 83, 714
BfuAI ACCTGC 2 cut(s) 508, 1793
BfuI GTATCC 1 cut(s) 919
BisI GCNGC 6 cut(s) 52, 99, 1069, 1614, 1758, 1761
BlpI GCTNAGC 1 cut(s) 1653
BlsI GCNGC 6 cut(s) 53, 100, 1070, 1615, 1759, 1762
Bme1390I CCNGG 3 cut(s) 305, 467, 1783
Bme18I GGWCC 3 cut(s) 385, 1000, 1024
BmeRI GACNNNNNGTC 1 cut(s) 709
BmeT110I CYCGRG 3 cut(s) 161, 858, 1439
BmgT120I GGNCC 8 cut(s) 306, 385, 571, 572, 695, 1000, 1024, 1755
BmiI GGNNCC 5 cut(s) 386, 573, 696, 887, 1072
BmrFI CCNGG 3 cut(s) 305, 467, 1783
BmsI GCATC 4 cut(s) 760, 909, 1070, 1392
BmtI GCTAGC 1 cut(s) 900
BoxI GACNNNNGTC 1 cut(s) 1029
BpiI GAAGAC 1 cut(s) 1127
BpmI CTGGAG 3 cut(s) 1437, 1577, 1804
Bpu10I CCTNAGC 6 cut(s) 363, 399, 1152, 1330, 1581, 1862
Bpu1102I GCTNAGC 1 cut(s) 1653
BpuEI CTTGAG 2 cut(s) 587, 644
BpuMI CCSGG 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 1429
BsaJI CCNNGG 4 cut(s) 99, 465, 466, 1440
BsaWI WCCGGW 2 cut(s) 113, 997
BsaXI ACNNNNNCTCC 6 cut(s) 47, 77, 427, 457, 846, 876
Bsc4I CCNNNNNNNGG 7 cut(s) 47, 100, 303, 569, 610, 1623, 1624
Bse118I RCCGGY 1 cut(s) 705
Bse3DI GCAATG 4 cut(s) 258, 831, 1040, 1745
BseAI TCCGGA 1 cut(s) 113
BseBI CCWGG 2 cut(s) 467, 1783
BseDI CCNNGG 4 cut(s) 99, 465, 466, 1440
BseGI GGATG 5 cut(s) 388, 394, 625, 789, 1542
BseLI CCNNNNNNNGG 7 cut(s) 47, 100, 303, 569, 610, 1623, 1624
BseMI GCAATG 4 cut(s) 258, 831, 1040, 1745
BseRI GAGGAG 4 cut(s) 49, 52, 127, 145
BseSI GKGCMC 2 cut(s) 559, 575
BseX3I CGGCCG 2 cut(s) 586, 1708
BseXI GCAGC 2 cut(s) 38, 1772
BseYI CCCAGC 1 cut(s) 1622
Bsh1236I CGCG 1 cut(s) 101
Bsh1285I CGRYCG 2 cut(s) 589, 1711
BshFI GGCC 6 cut(s) 308, 573, 588, 697, 1710, 1757
BshNI GGYRCC 1 cut(s) 1070
BsiEI CGRYCG 2 cut(s) 589, 1711
BsiHKAI GWGCWC 3 cut(s) 559, 859, 1739
BsiHKCI CYCGRG 3 cut(s) 161, 858, 1439
BsiSI CCGG 4 cut(s) 114, 304, 706, 998
BslFI GGGAC 1 cut(s) 1304
BslI CCNNNNNNNGG 7 cut(s) 47, 100, 303, 569, 610, 1623, 1624
BsmAI GTCTC 3 cut(s) 1213, 1429, 1793
BsmFI GGGAC 1 cut(s) 1304
BsmI GAATGC 1 cut(s) 1863
BsnI GGCC 6 cut(s) 308, 573, 588, 697, 1710, 1757
Bso31I GGTCTC 1 cut(s) 1429
BsoBI CYCGRG 3 cut(s) 161, 858, 1439
Bsp120I GGGCCC 1 cut(s) 571
Bsp1286I GDGCHC 4 cut(s) 559, 575, 859, 1739
Bsp13I TCCGGA 1 cut(s) 113
Bsp143I GATC 6 cut(s) 459, 812, 1381, 1483, 1589, 1704
Bsp1720I GCTNAGC 1 cut(s) 1653
BspACI CCGC 9 cut(s) 69, 96, 99, 101, 225, 836, 1068, 1614, 1758
BspANI GGCC 6 cut(s) 308, 573, 588, 697, 1710, 1757
BspEI TCCGGA 1 cut(s) 113
BspFNI CGCG 1 cut(s) 101
BspHI TCATGA 1 cut(s) 1794
BspLI GGNNCC 5 cut(s) 386, 573, 696, 887, 1072
BspMI ACCTGC 2 cut(s) 508, 1793
BspOI GCTAGC 1 cut(s) 900
BspPI GGATC 1 cut(s) 1376
BspT107I GGYRCC 1 cut(s) 1070
BspTNI GGTCTC 1 cut(s) 1429
BsrDI GCAATG 4 cut(s) 258, 831, 1040, 1745
BsrFI RCCGGY 1 cut(s) 705
BssAI RCCGGY 1 cut(s) 705
BssECI CCNNGG 4 cut(s) 99, 465, 466, 1440
BssMI GATC 6 cut(s) 459, 812, 1381, 1483, 1589, 1704
BssNAI GTATAC 1 cut(s) 1698
BssNI GRCGYC 1 cut(s) 122
Bst1107I GTATAC 1 cut(s) 1698
Bst2UI CCWGG 2 cut(s) 467, 1783
Bst4CI ACNGT 3 cut(s) 333, 613, 1171
Bst6I CTCTTC 3 cut(s) 514, 736, 1281
BstACI GRCGYC 1 cut(s) 122
BstC8I GCNNGC 5 cut(s) 666, 898, 937, 960, 1047
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 5 cut(s) 388, 394, 625, 789, 1542
BstFNI CGCG 1 cut(s) 101
BstHHI GCGC 2 cut(s) 176, 1494
BstKTI GATC 6 cut(s) 462, 815, 1384, 1486, 1592, 1707
BstMAI GTCTC 3 cut(s) 1213, 1429, 1793
BstMBI GATC 6 cut(s) 459, 812, 1381, 1483, 1589, 1704
BstMCI CGRYCG 2 cut(s) 589, 1711
BstMWI GCNNNNNNNGC 6 cut(s) 180, 300, 794, 1463, 1577, 1619
BstNI CCWGG 2 cut(s) 467, 1783
BstNSI RCATGY 2 cut(s) 1049, 1226
BstPAI GACNNNNGTC 1 cut(s) 1029
BstSCI CCNGG 3 cut(s) 303, 465, 1781
BstSFI CTRYAG 2 cut(s) 83, 714
BstSLI GKGCMC 2 cut(s) 559, 575
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 38, 1772
BstV2I GAAGAC 1 cut(s) 1127
BstX2I RGATCY 1 cut(s) 1381
BstYI RGATCY 1 cut(s) 1381
BstZ17I GTATAC 1 cut(s) 1698
BstZI CGGCCG 2 cut(s) 586, 1708
BsuI GTATCC 1 cut(s) 919
BsuRI GGCC 6 cut(s) 308, 573, 588, 697, 1710, 1757
BtgI CCRYGG 1 cut(s) 99
BtgZI GCGATG 1 cut(s) 1426
BtsCI GGATG 5 cut(s) 388, 394, 625, 789, 1542
BtsI GCAGTG 1 cut(s) 1473
BtsIMutI CAGTG 4 cut(s) 455, 1359, 1473, 1659
BveI ACCTGC 2 cut(s) 508, 1793
Cac8I GCNNGC 5 cut(s) 666, 898, 937, 960, 1047
CaiI CAGNNNCTG 1 cut(s) 457
CciI TCATGA 1 cut(s) 1794
CfoI GCGC 2 cut(s) 176, 1494
Cfr10I RCCGGY 1 cut(s) 705
Cfr13I GGNCC 8 cut(s) 306, 385, 571, 572, 695, 1000, 1024, 1755
Cfr42I CCGCGG 1 cut(s) 102
CseI GACGC 1 cut(s) 111
Csp6I GTAC 5 cut(s) 109, 329, 591, 642, 1309
CviQI GTAC 5 cut(s) 109, 329, 591, 642, 1309
DpnI GATC 6 cut(s) 461, 814, 1383, 1485, 1591, 1706
DpnII GATC 6 cut(s) 459, 812, 1381, 1483, 1589, 1704
DriI GACNNNNNGTC 1 cut(s) 709
EaeI YGGCCR 2 cut(s) 586, 1708
EagI CGGCCG 2 cut(s) 586, 1708
Eam1104I CTCTTC 3 cut(s) 514, 736, 1281
Eam1105I GACNNNNNGTC 1 cut(s) 709
EarI CTCTTC 3 cut(s) 514, 736, 1281
Ecl136II GAGCTC 2 cut(s) 857, 1737
EclXI CGGCCG 2 cut(s) 586, 1708
Eco24I GRGCYC 3 cut(s) 575, 859, 1739
Eco31I GGTCTC 1 cut(s) 1429
Eco47I GGWCC 3 cut(s) 385, 1000, 1024
Eco52I CGGCCG 2 cut(s) 586, 1708
Eco53kI GAGCTC 2 cut(s) 857, 1737
Eco57I CTGAAG 5 cut(s) 44, 498, 684, 1305, 1683
Eco88I CYCGRG 3 cut(s) 161, 858, 1439
EcoICRI GAGCTC 2 cut(s) 857, 1737
EcoO109I RGGNCCY 3 cut(s) 571, 572, 695
EcoRI GAATTC 1 cut(s) 993
EcoRII CCWGG 2 cut(s) 465, 1781
EcoT22I ATGCAT 1 cut(s) 1063
EcoT38I GRGCYC 3 cut(s) 575, 859, 1739
FalI AAGNNNNNCTT 2 cut(s) 1165, 1197
FaqI GGGAC 1 cut(s) 1304
FauI CCCGC 1 cut(s) 103
FauNDI CATATG 1 cut(s) 931
FblI GTMKAC 1 cut(s) 1697
Fnu4HI GCNGC 6 cut(s) 52, 99, 1069, 1614, 1758, 1761
FokI GGATG 5 cut(s) 375, 381, 632, 776, 1549
FriOI GRGCYC 3 cut(s) 575, 859, 1739
Fsp4HI GCNGC 6 cut(s) 52, 99, 1069, 1614, 1758, 1761
FspBI CTAG 4 cut(s) 738, 897, 975, 1764
GlaI GCGC 2 cut(s) 175, 1493
GluI GCNGC 6 cut(s) 52, 99, 1069, 1614, 1758, 1761
GsaI CCCAGC 1 cut(s) 1626
GsuI CTGGAG 3 cut(s) 1437, 1577, 1804
HaeIII GGCC 6 cut(s) 308, 573, 588, 697, 1710, 1757
HapII CCGG 4 cut(s) 114, 304, 706, 998
HgaI GACGC 1 cut(s) 111
HhaI GCGC 2 cut(s) 176, 1494
Hin1I GRCGYC 1 cut(s) 122
Hin6I GCGC 2 cut(s) 174, 1492
HinP1I GCGC 2 cut(s) 174, 1492
HpaII CCGG 4 cut(s) 114, 304, 706, 998
HphI GGTGA 5 cut(s) 214, 489, 1204, 1599, 1781
Hpy166II GTNNAC 6 cut(s) 557, 593, 1003, 1309, 1698, 1808
Hpy188I TCNGA 9 cut(s) 130, 418, 517, 703, 756, 769, 916, 1240, 1729
Hpy8I GTNNAC 6 cut(s) 557, 593, 1003, 1309, 1698, 1808
Hpy99I CGWCG 2 cut(s) 127, 275
HpyAV CCTTC 7 cut(s) 22, 632, 665, 708, 833, 870, 1090
HpyCH4III ACNGT 3 cut(s) 333, 613, 1171
HpyCH4IV ACGT 2 cut(s) 192, 270
HpyF10VI GCNNNNNNNGC 6 cut(s) 180, 300, 794, 1463, 1577, 1619
HpySE526I ACGT 2 cut(s) 192, 270
Hsp92I GRCGYC 1 cut(s) 122
HspAI GCGC 2 cut(s) 174, 1492
Kpn2I TCCGGA 1 cut(s) 113
KspI CCGCGG 1 cut(s) 102
Kzo9I GATC 6 cut(s) 459, 812, 1381, 1483, 1589, 1704
LmnI GCTCC 3 cut(s) 346, 854, 1339
Lsp1109I GCAGC 2 cut(s) 38, 1772
LweI GCATC 4 cut(s) 760, 909, 1070, 1392
MaeI CTAG 4 cut(s) 738, 897, 975, 1764
MaeII ACGT 2 cut(s) 192, 270
MaeIII GTNAC 5 cut(s) 188, 453, 495, 607, 1769
MalI GATC 6 cut(s) 461, 814, 1383, 1485, 1591, 1706
MboI GATC 6 cut(s) 459, 812, 1381, 1483, 1589, 1704
MboII GAAGA 9 cut(s) 37, 211, 501, 504, 753, 771, 1127, 1207, 1298
MfeI CAATTG 1 cut(s) 953
MflI RGATCY 1 cut(s) 1381
MhlI GDGCHC 4 cut(s) 559, 575, 859, 1739
MluCI AATT 7 cut(s) 477, 529, 674, 953, 993, 1298, 1822
MlyI GAGTC 5 cut(s) 50, 503, 753, 870, 1795
MmeI TCCRAC 3 cut(s) 174, 1058, 1338
Mph1103I ATGCAT 1 cut(s) 1063
MroI TCCGGA 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 2 cut(s) 227, 1227
MspA1I CMGCKG 3 cut(s) 101, 227, 1457
MspI CCGG 4 cut(s) 114, 304, 706, 998
MspR9I CCNGG 3 cut(s) 305, 467, 1783
MunI CAATTG 1 cut(s) 953
Mva1269I GAATGC 1 cut(s) 1863
MvaI CCWGG 2 cut(s) 467, 1783
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 6 cut(s) 180, 300, 794, 1463, 1577, 1619
NciI CCSGG 1 cut(s) 305
NdeI CATATG 1 cut(s) 931
NdeII GATC 6 cut(s) 459, 812, 1381, 1483, 1589, 1704
NheI GCTAGC 1 cut(s) 896
NlaIV GGNNCC 5 cut(s) 386, 573, 696, 887, 1072
NmeAIII GCCGAG 1 cut(s) 27
NmuCI GTSAC 4 cut(s) 453, 495, 607, 1769
NsiI ATGCAT 1 cut(s) 1063
NspI RCATGY 2 cut(s) 1049, 1226
OliI CACNNNNGTG 1 cut(s) 227
PaeI GCATGC 1 cut(s) 1049
PaeR7I CTCGAG 2 cut(s) 161, 858
PagI TCATGA 1 cut(s) 1794
PaqCI CACCTGC 2 cut(s) 508, 1793
PasI CCCWGGG 1 cut(s) 466
PciI ACATGT 1 cut(s) 1222
PctI GAATGC 1 cut(s) 1863
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 9 cut(s) 104, 358, 484, 518, 803, 949, 1088, 1109, 1325
PkrI GCNGC 6 cut(s) 53, 100, 1070, 1615, 1759, 1762
PleI GAGTC 5 cut(s) 50, 502, 752, 869, 1794
PpsI GAGTC 5 cut(s) 50, 502, 752, 869, 1794
PscI ACATGT 1 cut(s) 1222
PshAI GACNNNNGTC 1 cut(s) 1029
Psp124BI GAGCTC 2 cut(s) 859, 1739
Psp6I CCWGG 2 cut(s) 465, 1781
PspFI CCCAGC 1 cut(s) 1622
PspGI CCWGG 2 cut(s) 465, 1781
PspN4I GGNNCC 5 cut(s) 386, 573, 696, 887, 1072
PspOMI GGGCCC 1 cut(s) 571
PspPI GGNCC 8 cut(s) 306, 385, 571, 572, 695, 1000, 1024, 1755
PspXI VCTCGAGB 1 cut(s) 858
PstNI CAGNNNCTG 1 cut(s) 457
PsuI RGATCY 1 cut(s) 1381
PvuII CAGCTG 1 cut(s) 1457
RsaI GTAC 5 cut(s) 110, 330, 592, 643, 1310
RsaNI GTAC 5 cut(s) 109, 329, 591, 642, 1309
RseI CAYNNNNRTG 2 cut(s) 227, 1227
SacI GAGCTC 2 cut(s) 859, 1739
SacII CCGCGG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 6 cut(s) 52, 99, 1069, 1614, 1758, 1761
Sau3AI GATC 6 cut(s) 459, 812, 1381, 1483, 1589, 1704
Sau96I GGNCC 8 cut(s) 306, 385, 571, 572, 695, 1000, 1024, 1755
SchI GAGTC 5 cut(s) 50, 503, 753, 870, 1795
ScrFI CCNGG 3 cut(s) 305, 467, 1783
SduI GDGCHC 4 cut(s) 559, 575, 859, 1739
SfaNI GCATC 4 cut(s) 760, 909, 1070, 1392
SfcI CTRYAG 2 cut(s) 83, 714
Sfr274I CTCGAG 2 cut(s) 161, 858
Sfr303I CCGCGG 1 cut(s) 102
SgrBI CCGCGG 1 cut(s) 102
SinI GGWCC 3 cut(s) 385, 1000, 1024
SlaI CTCGAG 2 cut(s) 161, 858
SmiMI CAYNNNNRTG 2 cut(s) 227, 1227
SmlI CTYRAG 4 cut(s) 161, 566, 659, 858
SmoI CTYRAG 4 cut(s) 161, 566, 659, 858
SphI GCATGC 1 cut(s) 1049
Sse9I AATT 7 cut(s) 477, 529, 674, 953, 993, 1298, 1822
SsiI CCGC 9 cut(s) 69, 96, 99, 101, 225, 836, 1068, 1614, 1758
SspMI CTAG 4 cut(s) 738, 897, 975, 1764
SstI GAGCTC 2 cut(s) 859, 1739
StyD4I CCNGG 3 cut(s) 303, 465, 1781
TaaI ACNGT 3 cut(s) 333, 613, 1171
TaiI ACGT 2 cut(s) 195, 273
TaqI TCGA 8 cut(s) 162, 252, 273, 778, 859, 1086, 1205, 1486
TasI AATT 7 cut(s) 477, 529, 674, 953, 993, 1298, 1822
TauI GCSGC 4 cut(s) 101, 1071, 1616, 1760
TfiI GAWTC 9 cut(s) 104, 358, 484, 518, 803, 949, 1088, 1109, 1325
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 4 cut(s) 462, 1359, 1473, 1666
TseFI GTSAC 4 cut(s) 453, 495, 607, 1769
TseI GCWGC 2 cut(s) 51, 1760
Tsp45I GTSAC 4 cut(s) 453, 495, 607, 1769
TspDTI ATGAA 3 cut(s) 962, 1072, 1253
TspGWI ACGGA 1 cut(s) 1549
TspRI CASTG 4 cut(s) 462, 1359, 1473, 1666
VneI GTGCAC 1 cut(s) 555
VpaK11BI GGWCC 3 cut(s) 385, 1000, 1024
XapI RAATTY 3 cut(s) 529, 674, 993
XceI RCATGY 2 cut(s) 1049, 1226
XhoI CTCGAG 2 cut(s) 161, 858
XmiI GTMKAC 1 cut(s) 1697
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 4 cut(s) 738, 897, 975, 1764
Zsp2I ATGCAT 1 cut(s) 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.