RLG00000032411

VWA domain containing CoxE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000360
Physical Location & Seq
Forward (+)
14656446 .. 14659044
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032411

Sequence Viewer

Length: 1809 bp
ATGTCTTCTCGGACTGCATCTGATCAAAACAATTGTGGCATTTGTCTGAGTAGCATGGCAACCCCGAAAGGACAAGCCATCTTCACTGCCCAATGCTCACACTCCTTCCACTACCCTTGCATTGTCCAGAATGTTCAGCATGGAAATCTTAGTTGCCCCATTTGCCGAGCAATATGGGATAAGCATAATGTTCCTTTCCAACCAAACAACTGGACTACTTCCCCCTCTCAACAAAACAACTCAGGTGATCCCCCTCACCCATGGGGTATTTTCCCTCAGCAAAACAACTTGGGTGGGAACTCTCCCAACATCTCCTTCTCATTCCAGCCACAACAGCCACCCCATCAGACTTATCATCAGTACTCGTATCAGCAACCCAGTTGGAATTATCCTTCCTTCCCATTCGTGCAGCAACCCCAGGCCCCTCCCCAGCCACCTAGCTTCTCTGATGATGAACCTCTTTTGTCCACCTCACCCATGCAATCCAATGACCCCCAGGGTATAACAATTAAGACTCAGACCGAGTCCTTGGCTATCTCTGCTGCAGAATCTCATCCACGATATCCTGTTCTTGTCAGCATTTGCGCACCATCTCTTCAAGATACCGATGGCCATGGGAGTACCCCGGTCGACCTTGTGACAGTTCTGGATGTAAGTGGCAGCATGTGTGGCCTAAAGCTTGACCTTGTGAAGCGCGCTGTCAAATTTGTCATACATAACTTGGGGCCTTCAGACCGCCTTTCAATAGTTACATTCTCAACAACTGCTAGAAGAGTCTTTCCTCTCAGAAGAATGTCTGTTGAAGGCCGTGAAAGTGCTGTGCGAGCTGTCAATTCTCTTAGACCAGATAACATGACCAACATTGTGGCAGGACTCGAGATAGGAATTCGGGTCCTTGAAGAACGAAGGGAAAGGAACCCAGTTGCTAGCATCATGCTTTTATCCGATGGTGTGGATTCTTACTGTCATAGTCCAAGCCAACTGTTGAGCCAACTGCCTGCTTCGATTCGCTCTAATTGTATGCAACATGAAATTCCAGTCCACACATTTGGGTTTGGCAGCGACCATGATCCAAATACTATGCATGCTATATCTAATGCGTCAGGTGGCACCTTTTCATTCATTGAATCAGTTGGCATGATACAAGATTCCTTTGCTCTGTGCATTGGTGGTCTTCTCAGTGTTGTGGCTCAGGAAGTTCGCCTCACAGTAAGGTCAGCATCTCGTGGTGTGAAGATTGTAGCAATACCATCAGGGAGATATGTCAGAAATATATCTGATGAGGGCTTGCAAGGTGTGGTTGATGTTGGGAGTCTCTACGCAGAAGAGGAGAAACAATTTCTCGTCTACCTCTTAGTTCCACAATCCTCAGCTTCCGATACAAGGACATCATTGTTAGACGTGTCATGCGTGTACAGAGATCTAGCTTCAAATGAGTTAATCCAGATGCAAGGTGAGCTAGTTGAGATACCAAGACCTGTGGTTTGTTCCACTGCAGATCAGGTAGTCTCTTTAGAGGTTGATCGCCAGCGCAACAGAATTTTGGTCTCTGAAACTATAGCAGAGGCACAAGGGTTGGCTGAGATTGGAAATCTGGAGGCTGCACGGGCCATTTTGACTCAACGAACAGAAACTCTCTTAACAACACCAGCAGCCCGAGCAGGGGATGGTCTCAGCAATTTGCTCGAAACTGAGCTTCAAGAAATCATGGATAGAATGGCAACTATATATGGATTTGTATACTCACACTGGGCGTGCTTATGCCCTCTCGGGAATGAGCTCTCATTCACTGCAGAGAGCCACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

603

Amino Acids

65.79

Weight (kDa)

5.44

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 10 - 56 1.7e-07 Ring finger domain
zf-RING_11 PF17123 11 - 41 1.3e-09 RING-like zinc finger
zf-C3HC4 PF00097 12 - 55 3.4e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 12 - 55 5.8e-07 Zinc finger, C3HC4 type (RING finger)
VWA PF00092 211 - 377 3.3e-21 von Willebrand factor type A domain
VWA_3 PF13768 211 - 374 5.7e-17 von Willebrand factor type A domain
VWA_2 PF13519 212 - 317 2.3e-16 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 586
AccB1I GGYRCC 1 cut(s) 1109
AccI GTMKAC 3 cut(s) 630, 1347, 1740
AccII CGCG 1 cut(s) 696
AciI CCGC 1 cut(s) 736
AclWI GGATC 2 cut(s) 242, 1064
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 4 cut(s) 704, 885, 1032, 1539
AcuI CTGAAG 1 cut(s) 714
AfaI GTAC 3 cut(s) 362, 622, 1415
AfiI CCNNNNNNNGG 3 cut(s) 1383, 1662, 1663
AflIII ACRYGT 1 cut(s) 1401
AgsI TTSAA 7 cut(s) 599, 744, 803, 899, 1127, 1431, 1700
AjiI CACGTC 1 cut(s) 1402
AjnI CCWGG 2 cut(s) 417, 495
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 8 cut(s) 441, 679, 827, 1373, 1427, 1459, 1696, 1780
AluI AGCT 8 cut(s) 441, 679, 827, 1373, 1427, 1459, 1696, 1780
Alw21I GWGCWC 1 cut(s) 1782
Alw26I GTCTC 4 cut(s) 1319, 1513, 1552, 1676
AlwI GGATC 2 cut(s) 242, 1064
Ama87I CYCGRG 3 cut(s) 875, 1656, 1769
AoxI GGCC 6 cut(s) 420, 610, 670, 725, 805, 1608
ApeKI GCWGC 6 cut(s) 409, 542, 660, 1059, 1601, 1652
ApoI RAATTY 4 cut(s) 704, 885, 1032, 1539
ArsI GACNNNNNNTTYG 2 cut(s) 1467, 1499
AspLEI GCGC 4 cut(s) 587, 696, 698, 1533
AspS9I GGNCC 4 cut(s) 421, 725, 892, 1608
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 4 cut(s) 248, 257, 465, 1466
AsuNHI GCTAGC 1 cut(s) 926
AvaI CYCGRG 3 cut(s) 875, 1656, 1769
AvaII GGWCC 1 cut(s) 892
BalI TGGCCA 1 cut(s) 612
BanI GGYRCC 1 cut(s) 1109
BanII GRGCYC 1 cut(s) 1782
BauI CACGAG 1 cut(s) 1224
BbsI GAAGAC 1 cut(s) 1166
Bbv12I GWGCWC 1 cut(s) 1782
BbvCI CCTCAGC 2 cut(s) 276, 1369
BbvI GCAGC 6 cut(s) 421, 529, 672, 1071, 1588, 1664
BccI CCATC 7 cut(s) 86, 351, 598, 602, 941, 1258, 1661
BceAI ACGGC 1 cut(s) 792
BcgI CGANNNNNNTGC 2 cut(s) 1666, 1700
BciT130I CCWGG 2 cut(s) 419, 497
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 4 cut(s) 1319, 1513, 1552, 1676
BfaI CTAG 6 cut(s) 438, 768, 927, 1424, 1460, 1807
BfmI CTRYAG 4 cut(s) 543, 1494, 1557, 1791
BglII AGATCT 1 cut(s) 1420
BisI GCNGC 6 cut(s) 410, 543, 661, 1060, 1602, 1653
BlsI GCNGC 6 cut(s) 411, 544, 662, 1061, 1603, 1654
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 3 cut(s) 419, 497, 626
Bme18I GGWCC 1 cut(s) 892
BmeT110I CYCGRG 3 cut(s) 875, 1656, 1769
BmgBI CACGTC 1 cut(s) 1402
BmgT120I GGNCC 4 cut(s) 421, 725, 892, 1608
BmiI GGNNCC 5 cut(s) 423, 726, 893, 917, 1111
BmrFI CCNGG 3 cut(s) 419, 497, 626
BmrI ACTGGG 3 cut(s) 372, 914, 1759
BmsI GCATC 4 cut(s) 26, 939, 1229, 1437
BmtI GCTAGC 1 cut(s) 930
BmuI ACTGGG 3 cut(s) 372, 914, 1759
BpiI GAAGAC 1 cut(s) 1166
BpmI CTGGAG 1 cut(s) 1616
Bpu10I CCTNAGC 3 cut(s) 276, 1191, 1369
BpuMI CCSGG 1 cut(s) 626
BsaI GGTCTC 2 cut(s) 1552, 1676
BsaJI CCNNGG 7 cut(s) 260, 417, 495, 496, 528, 613, 624
Bsc4I CCNNNNNNNGG 3 cut(s) 1383, 1662, 1663
Bse1I ACTGG 5 cut(s) 215, 378, 920, 1037, 1754
BseBI CCWGG 2 cut(s) 419, 497
BseDI CCNNGG 7 cut(s) 260, 417, 495, 496, 528, 613, 624
BseGI GGATG 3 cut(s) 553, 655, 1672
BseLI CCNNNNNNNGG 3 cut(s) 1383, 1662, 1663
BseNI ACTGG 5 cut(s) 215, 378, 920, 1037, 1754
BsePI GCGCGC 1 cut(s) 694
BseRI GAGGAG 1 cut(s) 1343
BseXI GCAGC 6 cut(s) 421, 529, 672, 1071, 1588, 1664
BseYI CCCAGC 1 cut(s) 429
BsgI GTGCAG 2 cut(s) 428, 1587
Bsh1236I CGCG 1 cut(s) 696
Bsh1285I CGRYCG 1 cut(s) 630
BshFI GGCC 6 cut(s) 422, 612, 672, 727, 807, 1610
BshNI GGYRCC 1 cut(s) 1109
BsiEI CGRYCG 1 cut(s) 630
BsiHKAI GWGCWC 1 cut(s) 1782
BsiHKCI CYCGRG 3 cut(s) 875, 1656, 1769
BsiSI CCGG 1 cut(s) 626
BslI CCNNNNNNNGG 3 cut(s) 1383, 1662, 1663
BsmAI GTCTC 4 cut(s) 1319, 1513, 1552, 1676
BsnI GGCC 6 cut(s) 422, 612, 672, 727, 807, 1610
Bso31I GGTCTC 2 cut(s) 1552, 1676
BsoBI CYCGRG 3 cut(s) 875, 1656, 1769
Bsp1286I GDGCHC 1 cut(s) 1782
Bsp1407I TGTACA 1 cut(s) 1413
Bsp143I GATC 6 cut(s) 22, 247, 1069, 1420, 1498, 1522
Bsp19I CCATGG 2 cut(s) 260, 613
BspACI CCGC 1 cut(s) 736
BspANI GGCC 6 cut(s) 422, 612, 672, 727, 807, 1610
BspFNI CGCG 1 cut(s) 696
BspLI GGNNCC 5 cut(s) 423, 726, 893, 917, 1111
BspMAI CTGCAG 3 cut(s) 547, 1498, 1795
BspOI GCTAGC 1 cut(s) 930
BspPI GGATC 2 cut(s) 242, 1064
BspT107I GGYRCC 1 cut(s) 1109
BspTNI GGTCTC 2 cut(s) 1552, 1676
BsrGI TGTACA 1 cut(s) 1413
BsrI ACTGG 5 cut(s) 215, 378, 920, 1037, 1754
BssECI CCNNGG 7 cut(s) 260, 417, 495, 496, 528, 613, 624
BssHII GCGCGC 1 cut(s) 694
BssMI GATC 6 cut(s) 22, 247, 1069, 1420, 1498, 1522
BssNAI GTATAC 1 cut(s) 1741
BssSI CACGAG 1 cut(s) 1224
BssT1I CCWWGG 3 cut(s) 260, 528, 613
Bst1107I GTATAC 1 cut(s) 1741
Bst2BI CACGAG 1 cut(s) 1224
Bst2UI CCWGG 2 cut(s) 419, 497
Bst4CI ACNGT 4 cut(s) 643, 965, 984, 1210
Bst6I CTCTTC 3 cut(s) 600, 766, 1320
BstAUI TGTACA 1 cut(s) 1413
BstC8I GCNNGC 8 cut(s) 696, 825, 928, 999, 1086, 1289, 1529, 1756
BstDSI CCRYGG 2 cut(s) 260, 613
BstF5I GGATG 3 cut(s) 553, 655, 1672
BstFNI CGCG 1 cut(s) 696
BstHHI GCGC 4 cut(s) 587, 696, 698, 1533
BstKTI GATC 6 cut(s) 25, 250, 1072, 1423, 1501, 1525
BstMAI GTCTC 4 cut(s) 1319, 1513, 1552, 1676
BstMBI GATC 6 cut(s) 22, 247, 1069, 1420, 1498, 1522
BstMCI CGRYCG 1 cut(s) 630
BstMWI GCNNNNNNNGC 8 cut(s) 162, 334, 539, 669, 824, 1456, 1607, 1658
BstNI CCWGG 2 cut(s) 419, 497
BstNSI RCATGY 2 cut(s) 667, 1088
BstSCI CCNGG 3 cut(s) 417, 495, 624
BstSFI CTRYAG 4 cut(s) 543, 1494, 1557, 1791
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 6 cut(s) 421, 529, 672, 1071, 1588, 1664
BstV2I GAAGAC 1 cut(s) 1166
BstX2I RGATCY 1 cut(s) 1420
BstXI CCANNNNNNTGG 3 cut(s) 210, 865, 1049
BstYI RGATCY 1 cut(s) 1420
BstZ17I GTATAC 1 cut(s) 1741
BsuRI GGCC 6 cut(s) 422, 612, 672, 727, 807, 1610
BtgI CCRYGG 2 cut(s) 260, 613
BtrI CACGTC 1 cut(s) 1402
BtsCI GGATG 3 cut(s) 553, 655, 1672
BtsI GCAGTG 3 cut(s) 84, 1491, 1788
BtsIMutI CAGTG 5 cut(s) 84, 1186, 1491, 1747, 1788
Cac8I GCNNGC 8 cut(s) 696, 825, 928, 999, 1086, 1289, 1529, 1756
CfoI GCGC 4 cut(s) 587, 696, 698, 1533
Cfr13I GGNCC 4 cut(s) 421, 725, 892, 1608
CseI GACGC 1 cut(s) 1089
Csp6I GTAC 3 cut(s) 361, 621, 1414
CspCI CAANNNNNGTGG 6 cut(s) 98, 133, 274, 309, 1461, 1496
CviQI GTAC 3 cut(s) 361, 621, 1414
DpnI GATC 6 cut(s) 24, 249, 1071, 1422, 1500, 1524
DpnII GATC 6 cut(s) 22, 247, 1069, 1420, 1498, 1522
EaeI YGGCCR 1 cut(s) 610
Eam1104I CTCTTC 3 cut(s) 600, 766, 1320
EarI CTCTTC 3 cut(s) 600, 766, 1320
Ecl136II GAGCTC 1 cut(s) 1780
Eco130I CCWWGG 3 cut(s) 260, 528, 613
Eco24I GRGCYC 1 cut(s) 1782
Eco31I GGTCTC 2 cut(s) 1552, 1676
Eco32I GATATC 1 cut(s) 563
Eco47I GGWCC 1 cut(s) 892
Eco53kI GAGCTC 1 cut(s) 1780
Eco57I CTGAAG 1 cut(s) 714
Eco88I CYCGRG 3 cut(s) 875, 1656, 1769
EcoICRI GAGCTC 1 cut(s) 1780
EcoO109I RGGNCCY 3 cut(s) 421, 725, 892
EcoRI GAATTC 1 cut(s) 885
EcoRII CCWGG 2 cut(s) 417, 495
EcoRV GATATC 1 cut(s) 563
EcoT14I CCWWGG 3 cut(s) 260, 528, 613
EcoT22I ATGCAT 1 cut(s) 1086
EcoT38I GRGCYC 1 cut(s) 1782
ErhI CCWWGG 3 cut(s) 260, 528, 613
FbaI TGATCA 1 cut(s) 22
FblI GTMKAC 3 cut(s) 630, 1347, 1740
Fnu4HI GCNGC 6 cut(s) 410, 543, 661, 1060, 1602, 1653
FokI GGATG 3 cut(s) 540, 662, 1679
FriOI GRGCYC 1 cut(s) 1782
Fsp4HI GCNGC 6 cut(s) 410, 543, 661, 1060, 1602, 1653
FspBI CTAG 6 cut(s) 438, 768, 927, 1424, 1460, 1807
FspI TGCGCA 1 cut(s) 586
GlaI GCGC 4 cut(s) 586, 695, 697, 1532
GluI GCNGC 6 cut(s) 410, 543, 661, 1060, 1602, 1653
GsaI CCCAGC 1 cut(s) 433
GsuI CTGGAG 1 cut(s) 1616
HaeIII GGCC 6 cut(s) 422, 612, 672, 727, 807, 1610
HapII CCGG 1 cut(s) 626
HgaI GACGC 1 cut(s) 1089
HhaI GCGC 4 cut(s) 587, 696, 698, 1533
Hin6I GCGC 4 cut(s) 585, 694, 696, 1531
HinP1I GCGC 4 cut(s) 585, 694, 696, 1531
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 1 cut(s) 677
HpaII CCGG 1 cut(s) 626
HphI GGTGA 4 cut(s) 248, 257, 465, 1466
Hpy166II GTNNAC 6 cut(s) 468, 631, 1042, 1348, 1414, 1741
Hpy188III TCNNGA 9 cut(s) 127, 599, 647, 877, 1193, 1444, 1595, 1700, 1771
Hpy8I GTNNAC 6 cut(s) 468, 631, 1042, 1348, 1414, 1741
HpyAV CCTTC 7 cut(s) 115, 325, 402, 406, 738, 797, 900
HpyCH4III ACNGT 4 cut(s) 643, 965, 984, 1210
HpyCH4IV ACGT 1 cut(s) 1401
HpyF10VI GCNNNNNNNGC 8 cut(s) 162, 334, 539, 669, 824, 1456, 1607, 1658
HpySE526I ACGT 1 cut(s) 1401
HspAI GCGC 4 cut(s) 585, 694, 696, 1531
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 6 cut(s) 22, 247, 1069, 1420, 1498, 1522
Lsp1109I GCAGC 6 cut(s) 421, 529, 672, 1071, 1588, 1664
LweI GCATC 4 cut(s) 26, 939, 1229, 1437
MaeI CTAG 6 cut(s) 438, 768, 927, 1424, 1460, 1807
MaeII ACGT 1 cut(s) 1401
MaeIII GTNAC 2 cut(s) 637, 748
MalI GATC 6 cut(s) 24, 249, 1071, 1422, 1500, 1524
MboI GATC 6 cut(s) 22, 247, 1069, 1420, 1498, 1522
MboII GAAGA 8 cut(s) 73, 587, 783, 801, 911, 1166, 1246, 1337
MfeI CAATTG 1 cut(s) 31
MflI RGATCY 1 cut(s) 1420
MhlI GDGCHC 1 cut(s) 1782
MlsI TGGCCA 1 cut(s) 612
MluNI TGGCCA 1 cut(s) 612
MlyI GAGTC 6 cut(s) 508, 533, 783, 867, 1321, 1612
MmeI TCCRAC 2 cut(s) 223, 362
Mox20I TGGCCA 1 cut(s) 612
Mph1103I ATGCAT 1 cut(s) 1086
MscI TGGCCA 1 cut(s) 612
MseI TTAA 3 cut(s) 510, 1439, 1640
Msp20I TGGCCA 1 cut(s) 612
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 3 cut(s) 419, 497, 626
MunI CAATTG 1 cut(s) 31
MvaI CCWGG 2 cut(s) 419, 497
MvnI CGCG 1 cut(s) 696
MwoI GCNNNNNNNGC 8 cut(s) 162, 334, 539, 669, 824, 1456, 1607, 1658
NciI CCSGG 1 cut(s) 626
NcoI CCATGG 2 cut(s) 260, 613
NdeII GATC 6 cut(s) 22, 247, 1069, 1420, 1498, 1522
NheI GCTAGC 1 cut(s) 926
NlaIV GGNNCC 5 cut(s) 423, 726, 893, 917, 1111
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 637
NsbI TGCGCA 1 cut(s) 586
NsiI ATGCAT 1 cut(s) 1086
NspI RCATGY 2 cut(s) 667, 1088
PaeI GCATGC 1 cut(s) 1088
PaeR7I CTCGAG 1 cut(s) 875
PasI CCCWGGG 1 cut(s) 496
PauI GCGCGC 1 cut(s) 694
PcsI WCGNNNNNNNCGW 1 cut(s) 1407
PfeI GAWTC 5 cut(s) 548, 956, 1006, 1127, 1148
PflFI GACNNNGTC 1 cut(s) 523
PkrI GCNGC 6 cut(s) 411, 544, 662, 1061, 1603, 1654
PleI GAGTC 6 cut(s) 508, 532, 782, 867, 1320, 1612
PpsI GAGTC 6 cut(s) 508, 532, 782, 867, 1320, 1612
PpuMI RGGWCCY 1 cut(s) 892
Psp124BI GAGCTC 1 cut(s) 1782
Psp5II RGGWCCY 1 cut(s) 892
Psp6I CCWGG 2 cut(s) 417, 495
PspFI CCCAGC 1 cut(s) 429
PspGI CCWGG 2 cut(s) 417, 495
PspN4I GGNNCC 5 cut(s) 423, 726, 893, 917, 1111
PspPI GGNCC 4 cut(s) 421, 725, 892, 1608
PspPPI RGGWCCY 1 cut(s) 892
PstI CTGCAG 3 cut(s) 547, 1498, 1795
PsuI RGATCY 1 cut(s) 1420
PsyI GACNNNGTC 1 cut(s) 523
PteI GCGCGC 1 cut(s) 694
RsaI GTAC 3 cut(s) 362, 622, 1415
RsaNI GTAC 3 cut(s) 361, 621, 1414
SacI GAGCTC 1 cut(s) 1782
SalI GTCGAC 1 cut(s) 629
SaqAI TTAA 3 cut(s) 510, 1439, 1640
SatI GCNGC 6 cut(s) 410, 543, 661, 1060, 1602, 1653
Sau3AI GATC 6 cut(s) 22, 247, 1069, 1420, 1498, 1522
Sau96I GGNCC 4 cut(s) 421, 725, 892, 1608
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 6 cut(s) 508, 533, 783, 867, 1321, 1612
ScrFI CCNGG 3 cut(s) 419, 497, 626
SduI GDGCHC 1 cut(s) 1782
SfaNI GCATC 4 cut(s) 26, 939, 1229, 1437
SfcI CTRYAG 4 cut(s) 543, 1494, 1557, 1791
Sfr274I CTCGAG 1 cut(s) 875
SinI GGWCC 1 cut(s) 892
SlaI CTCGAG 1 cut(s) 875
SmlI CTYRAG 1 cut(s) 875
SmoI CTYRAG 1 cut(s) 875
SphI GCATGC 1 cut(s) 1088
SsiI CCGC 1 cut(s) 736
SspMI CTAG 6 cut(s) 438, 768, 927, 1424, 1460, 1807
SstI GAGCTC 1 cut(s) 1782
StyD4I CCNGG 3 cut(s) 417, 495, 624
StyI CCWWGG 3 cut(s) 260, 528, 613
TaaI ACNGT 4 cut(s) 643, 965, 984, 1210
TaiI ACGT 1 cut(s) 1404
TaqI TCGA 4 cut(s) 630, 876, 1004, 1686
TaqII GACCGA 1 cut(s) 536
TatI WGTACW 2 cut(s) 360, 1413
TfiI GAWTC 5 cut(s) 548, 956, 1006, 1127, 1148
Tru1I TTAA 3 cut(s) 510, 1439, 1640
Tru9I TTAA 3 cut(s) 510, 1439, 1640
TscAI CASTG 5 cut(s) 91, 1186, 1498, 1754, 1795
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 6 cut(s) 409, 542, 660, 1059, 1601, 1652
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 4 cut(s) 468, 1044, 1107, 1111
TspRI CASTG 5 cut(s) 91, 1186, 1498, 1754, 1795
Tth111I GACNNNGTC 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 892
XapI RAATTY 4 cut(s) 704, 885, 1032, 1539
XceI RCATGY 2 cut(s) 667, 1088
XhoI CTCGAG 1 cut(s) 875
XmiI GTMKAC 3 cut(s) 630, 1347, 1740
XspI CTAG 6 cut(s) 438, 768, 927, 1424, 1460, 1807
ZrmI AGTACT 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.