Rorug05G0047300

VWA domain containing CoxE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000360
Physical Location & Seq
Forward (+)
4121291 .. 4124160
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0047300.1

Sequence Viewer

Length: 894 bp
ATGGGTTTGTTTGGGCTGTGGTGGAATGGAAGTGCGGTAGGGCTTCTTCTATTGGTGCCAGGAATTCTGGGTTGGGGCAAAGAAGGCCATTATGCAGTTTGCAAGATAGCAGAGGGATTTCTGAGTGAAGATGCTTTAGCTGCAGTGAAAGAATTGCTACCGGAATCTGCTGGAGGTGAACTTGCTGCAGTTTGCTCCTGGCCTGATGAGATTCGCTTTCATTATCATTGGAGTAGTGCTTTACACTATGTTGACACACCCGATTTTCTGTGTAACTACAATTACAGCAGAGACTGCCATGACTCTGCTGGACATAAAGGGAGATGTGTAACTGCAGCAATATACAACTATACGATGCAACTTTCGACTTATCAGGATTCCATCTCAAAATCAAAATACAACTTAACAGAGGCACTTCTTTTCTTGTCTCACTTTATTGGGGATGTCCATCAGCCCCTTCATGTTGGTTTCACTGGAGATCTAGGGGGGAACACAATAATAGTCCGTTGGTATCGCAGGAAGACAAATCTTCACCATGTGTGGGATAATATGATCATTGAATCTGCTGTAAAGACAATGTACAGTGAGGATCTTGAACTCATGATAGAAGCCATTCAGAGGAATATTACGGATGCTTGGTTCAATGATATGTCATCATTGCAGATTTGTGCAAATAATCGGACAATTGTATGCCCAAATGAGTATGCTTCTGAAAGCATTCGTTTAGCATGCAAATTTGCTTACAGGAATGCCACTCCAGGAAGCACTCTGAATGATGATTACTTTCTTTCTCGGCTACCTGTCGTGGAGAAGCGGCTAGCTCAAAGTGGGGTTCGCTTGGCTGCTACCCTCAACCATATCTTCTCTTCTGAACCAAAAATTGCTGAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA Vwaint zf-RING_11 zf-RING_2

Protein Analysis

297

Amino Acids

33.31

Weight (kDa)

5.82

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1-P1_nuclease PF02265 25 - 288 5.4e-83 S1/P1 Nuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000360)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11691 FvH4_3g11693 FvH4_3g11740 FvH4_3g11750 FvH4_3g11770 FvH4_3g11771 FvH4_3g11772 FvH4_3g11780
malus_domestica MD10G1239000.v1.1
prunus_persica Prupe.4G105400_v2.0.a1
pyrus_communis pycom10g20000
rosa_chinensis RchiOBHm_Chr5g0018981 RchiOBHm_Chr5g0018991 RchiOBHm_Chr5g0019101 RchiOBHm_Chr5g0019111 RchiOBHm_Chr5g0019121 RchiOBHm_Chr5g0019151 RchiOBHm_Chr5g0019161 RchiOBHm_Chr5g0019171 RchiOBHm_Chr5g0019181 RchiOBHm_Chr5g0019201
rosa_laevigata RLG00000032411 RLG00000032418 RLG00000032419 RLG00000032420 RLG00000032421 RLG00000032423 RLG00000032424 RLG00000032426
rosa_multiflora Rmu_co8475613.1_g000001 Rmu_co8503587.1_g000001 Rmu_sc0000563.1_g000023 Rmu_sc0000563.1_g000027 Rmu_sc0002142.1_g000001 Rmu_sc0002142.1_g000003 Rmu_sc0002142.1_g000004 Rmu_sc0002142.1_g000011 Rmu_sc0002142.1_g000022 Rmu_sc0002561.1_g000002 Rmu_sc0042836.1_g000001
rosa_roxburghii Rroxscaffold_1G00058790 Rroxscaffold_1G00058810 Rroxscaffold_1G00058820 Rroxscaffold_1G00058840 Rroxscaffold_1G00058850 Rroxscaffold_1G00058860 Rroxscaffold_1G00058880 Rroxscaffold_1G00058910 Rroxscaffold_1G00074090 Rroxscaffold_1G00074110 Rroxscaffold_1G00074120 Rroxscaffold_1G00074130 Rroxscaffold_1G00074150
rosa_rugosa Rorug05G0046800 Rorug05G0047200 Rorug05G0047300 Rorug05G0047400 Rorug05G0047600 Rorug05G0047600 Rorug05G0047800 Rorug05G0047900 Rorug05G0048000 Rorug05G0048100 Rorug05G0048100 Rorug05G0048200 Rorug05G0048300
rosa_samantha Rh4DG102800 Rh5AG138700 Rh5AG138900 Rh5AG139000 Rh5AG139100 Rh5AG139200 Rh5AG139400 Rh5AG139500 Rh5AG139600 Rh5BG137400 Rh5BG137600 Rh5BG137800 Rh5BG138100 Rh5BG138200 Rh5BG138300 Rh5BG138500 Rh5CG148800 Rh5CG148900 Rh5CG149200 Rh5CG149300 Rh5CG149400 Rh5CG149600 Rh5CG149700 Rh5CG150000 Rh5DG138200 Rh5DG138300 Rh5DG138500 Rh5DG138600 Rh5DG138700 Rh5DG138900 Rh5DG139000 Rh5DG139200
rosa_wichuraiana Rw5G012290 Rw5G012330 Rw5G012340 Rw5G012350 Rw5G012370 Rw5G012380 Rw5G012390 Rw5G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 2 cut(s) 35, 814
AclWI GGATC 1 cut(s) 597
AcsI RAATTY 2 cut(s) 63, 734
AdeI CACNNNGTG 1 cut(s) 538
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 2 cut(s) 541, 618
AgsI TTSAA 3 cut(s) 560, 596, 643
AjnI CCWGG 3 cut(s) 58, 197, 757
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AloI GAACNNNNNNTCC 2 cut(s) 623, 655
AluBI AGCT 2 cut(s) 140, 821
AluI AGCT 2 cut(s) 140, 821
Alw26I GTCTC 2 cut(s) 285, 432
AlwI GGATC 1 cut(s) 597
AlwNI CAGNNNCTG 1 cut(s) 294
AoxI GGCC 2 cut(s) 85, 200
ApeKI GCWGC 4 cut(s) 140, 185, 335, 842
ApoI RAATTY 2 cut(s) 63, 734
Asp700I GAANNNNTTC 2 cut(s) 612, 717
AsuHPI GGTGA 2 cut(s) 188, 524
AsuNHI GCTAGC 1 cut(s) 817
BanI GGYRCC 1 cut(s) 55
BarI GAAGNNNNNNTAC 2 cut(s) 30, 62
BbsI GAAGAC 1 cut(s) 527
BbvI GCAGC 4 cut(s) 127, 172, 347, 829
BccI CCATC 2 cut(s) 389, 456
BciT130I CCWGG 3 cut(s) 60, 199, 759
BclI TGATCA 1 cut(s) 552
BcoDI GTCTC 2 cut(s) 285, 432
BfaI CTAG 2 cut(s) 482, 818
BfmI CTRYAG 3 cut(s) 141, 186, 333
BglII AGATCT 1 cut(s) 478
BisI GCNGC 5 cut(s) 141, 186, 336, 815, 843
BlsI GCNGC 5 cut(s) 142, 187, 337, 816, 844
Bme1390I CCNGG 3 cut(s) 60, 199, 759
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 3 cut(s) 60, 199, 759
BmsI GCATC 3 cut(s) 121, 345, 622
BmtI GCTAGC 1 cut(s) 821
BpiI GAAGAC 1 cut(s) 527
BpmI CTGGAG 3 cut(s) 192, 495, 741
BsaBI GATNNNNATC 1 cut(s) 447
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 541, 618
Bse1I ACTGG 1 cut(s) 478
Bse3DI GCAATG 1 cut(s) 656
Bse8I GATNNNNATC 1 cut(s) 447
BseBI CCWGG 3 cut(s) 60, 199, 759
BseGI GGATG 2 cut(s) 448, 637
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 2 cut(s) 541, 618
BseMI GCAATG 1 cut(s) 656
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 478
BseXI GCAGC 4 cut(s) 127, 172, 347, 829
BshFI GGCC 2 cut(s) 87, 202
BshNI GGYRCC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 541, 618
BsmAI GTCTC 2 cut(s) 285, 432
BsmI GAATGC 2 cut(s) 717, 754
BsnI GGCC 2 cut(s) 87, 202
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 3 cut(s) 478, 552, 589
BspACI CCGC 2 cut(s) 35, 814
BspANI GGCC 2 cut(s) 87, 202
BspCNI CTCAG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 3 cut(s) 145, 190, 337
BspOI GCTAGC 1 cut(s) 821
BspPI GGATC 1 cut(s) 597
BspT107I GGYRCC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 656
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 1 cut(s) 478
BssMI GATC 3 cut(s) 478, 552, 589
Bst2UI CCWGG 3 cut(s) 60, 199, 759
Bst4CI ACNGT 1 cut(s) 584
Bst6I CTCTTC 1 cut(s) 871
BstAPI GCANNNNNTGC 1 cut(s) 294
BstAUI TGTACA 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 730, 819
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 2 cut(s) 448, 637
BstKTI GATC 3 cut(s) 481, 555, 592
BstMAI GTCTC 2 cut(s) 285, 432
BstMBI GATC 3 cut(s) 478, 552, 589
BstMWI GCNNNNNNNGC 3 cut(s) 84, 140, 294
BstNI CCWGG 3 cut(s) 60, 199, 759
BstNSI RCATGY 1 cut(s) 732
BstSCI CCNGG 3 cut(s) 58, 197, 757
BstSFI CTRYAG 3 cut(s) 141, 186, 333
BstV1I GCAGC 4 cut(s) 127, 172, 347, 829
BstV2I GAAGAC 1 cut(s) 527
BstX2I RGATCY 2 cut(s) 478, 589
BstYI RGATCY 2 cut(s) 478, 589
BsuRI GGCC 2 cut(s) 87, 202
BtsCI GGATG 2 cut(s) 448, 637
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 3 cut(s) 150, 471, 589
Cac8I GCNNGC 2 cut(s) 730, 819
CaiI CAGNNNCTG 1 cut(s) 294
CciI TCATGA 1 cut(s) 600
Csp6I GTAC 1 cut(s) 580
CviAII CATG 6 cut(s) 299, 461, 536, 601, 729, 891
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 1 cut(s) 122
DpnI GATC 3 cut(s) 480, 554, 591
DpnII GATC 3 cut(s) 478, 552, 589
DraIII CACNNNGTG 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 871
EarI CTCTTC 1 cut(s) 871
EcoRI GAATTC 1 cut(s) 63
EcoRII CCWGG 3 cut(s) 58, 197, 757
FaeI CATG 6 cut(s) 302, 464, 539, 604, 732, 894
FatI CATG 6 cut(s) 298, 460, 535, 600, 728, 890
FbaI TGATCA 1 cut(s) 552
Fnu4HI GCNGC 5 cut(s) 141, 186, 336, 815, 843
FokI GGATG 2 cut(s) 455, 644
Fsp4HI GCNGC 5 cut(s) 141, 186, 336, 815, 843
FspBI CTAG 2 cut(s) 482, 818
GluI GCNGC 5 cut(s) 141, 186, 336, 815, 843
GsuI CTGGAG 3 cut(s) 192, 495, 741
HaeIII GGCC 2 cut(s) 87, 202
HapII CCGG 1 cut(s) 161
Hin1II CATG 6 cut(s) 302, 464, 539, 604, 732, 894
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 5 cut(s) 164, 211, 302, 377, 560
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 188, 524
Hpy166II GTNNAC 2 cut(s) 179, 253
Hpy188I TCNGA 6 cut(s) 123, 618, 681, 712, 771, 871
Hpy188III TCNNGA 3 cut(s) 374, 593, 601
Hpy8I GTNNAC 2 cut(s) 179, 253
HpyAV CCTTC 2 cut(s) 77, 467
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4V TGCA 9 cut(s) 95, 102, 143, 188, 335, 358, 661, 671, 732
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 140, 294
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 6 cut(s) 302, 464, 539, 604, 732, 894
Ksp22I TGATCA 1 cut(s) 552
Kzo9I GATC 3 cut(s) 478, 552, 589
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 4 cut(s) 127, 172, 347, 829
LweI GCATC 3 cut(s) 121, 345, 622
MaeI CTAG 2 cut(s) 482, 818
MaeIII GTNAC 2 cut(s) 272, 328
MalI GATC 3 cut(s) 480, 554, 591
MboI GATC 3 cut(s) 478, 552, 589
MboII GAAGA 6 cut(s) 38, 140, 521, 532, 853, 858
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 2 cut(s) 478, 589
MluCI AATT 6 cut(s) 63, 152, 280, 684, 734, 879
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 6 cut(s) 106, 167, 403, 580, 612, 860
MroXI GAANNNNTTC 2 cut(s) 612, 717
MseI TTAA 1 cut(s) 404
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 3 cut(s) 60, 199, 759
MunI CAATTG 1 cut(s) 684
Mva1269I GAATGC 2 cut(s) 717, 754
MvaI CCWGG 3 cut(s) 60, 199, 759
MwoI GCNNNNNNNGC 3 cut(s) 84, 140, 294
NdeII GATC 3 cut(s) 478, 552, 589
NheI GCTAGC 1 cut(s) 817
NlaIII CATG 6 cut(s) 302, 464, 539, 604, 732, 894
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 772
NspI RCATGY 1 cut(s) 732
PaeI GCATGC 1 cut(s) 732
PagI TCATGA 1 cut(s) 600
PctI GAATGC 2 cut(s) 717, 754
PdmI GAANNNNTTC 2 cut(s) 612, 717
PfeI GAWTC 4 cut(s) 164, 211, 377, 560
PfoI TCCNGGA 1 cut(s) 757
PkrI GCNGC 5 cut(s) 142, 187, 337, 816, 844
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 3 cut(s) 58, 197, 757
PspGI CCWGG 3 cut(s) 58, 197, 757
PspN4I GGNNCC 1 cut(s) 57
PstI CTGCAG 3 cut(s) 145, 190, 337
PstNI CAGNNNCTG 1 cut(s) 294
PsuI RGATCY 2 cut(s) 478, 589
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 5 cut(s) 141, 186, 336, 815, 843
Sau3AI GATC 3 cut(s) 478, 552, 589
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 3 cut(s) 60, 199, 759
SetI ASST 4 cut(s) 142, 178, 802, 823
SfaNI GCATC 3 cut(s) 121, 345, 622
SfcI CTRYAG 3 cut(s) 141, 186, 333
SphI GCATGC 1 cut(s) 732
Sse9I AATT 6 cut(s) 63, 152, 280, 684, 734, 879
SsiI CCGC 2 cut(s) 35, 814
SspI AATATT 1 cut(s) 625
SspMI CTAG 2 cut(s) 482, 818
StyD4I CCNGG 3 cut(s) 58, 197, 757
TaaI ACNGT 1 cut(s) 584
TaqI TCGA 1 cut(s) 365
TasI AATT 6 cut(s) 63, 152, 280, 684, 734, 879
TatI WGTACW 1 cut(s) 579
TauI GCSGC 1 cut(s) 817
TfiI GAWTC 4 cut(s) 164, 211, 377, 560
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TscAI CASTG 3 cut(s) 150, 478, 589
TseI GCWGC 4 cut(s) 140, 185, 335, 842
TspDTI ATGAA 2 cut(s) 209, 449
TspGWI ACGGA 2 cut(s) 494, 644
TspRI CASTG 3 cut(s) 150, 478, 589
XapI RAATTY 2 cut(s) 63, 734
XceI RCATGY 1 cut(s) 732
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XmnI GAANNNNTTC 2 cut(s) 612, 717
XspI CTAG 2 cut(s) 482, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.